RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 PRM2P04554 102 aa13.82□□□□□ -0.2
CLN3-258ENST00000637184 CACNG7P62955 275 aa13.82□□□□□ -0.2
CLN3-258ENST00000637184 SPANXN1Q5VSR9 72 aa13.82□□□□□ -0.2
CLN3-258ENST00000637184 GNB1LQ9BYB4 327 aa13.82□□□□□ -0.2
CLN3-258ENST00000637184 SNURFLB1AK76 121 aa13.81□□□□□ -0.2
CLN3-258ENST00000637184 S100A8P05109 93 aa13.81□□□□□ -0.2
CLN3-258ENST00000637184 ZNF705AQ6ZN79 300 aaPredicted RBP13.81□□□□□ -0.2
CLN3-258ENST00000637184 MGAM2Q2M2H8 2515 aa13.81□□□□□ -0.2
CLN3-258ENST00000637184 A8MZ25 164 aa13.81□□□□□ -0.2
CLN3-258ENST00000637184 TMEM136Q6ZRR5 245 aa13.81□□□□□ -0.2
CLN3-258ENST00000637184 C9orf85Q96MD7 179 aa13.81□□□□□ -0.2
CLN3-258ENST00000637184 TRAPPC1Q9Y5R8 145 aa13.81□□□□□ -0.2
CLN3-258ENST00000637184 NOTCH1P46531 2555 aa13.8□□□□□ -0.2
CLN3-258ENST00000637184 MT-ND6P03923 174 aa13.8□□□□□ -0.2
CLN3-258ENST00000637184 ZNF415Q09FC8 603 aa13.8□□□□□ -0.2
CLN3-258ENST00000637184 DNAH3Q8TD57 4116 aa13.8□□□□□ -0.2
CLN3-258ENST00000637184 IGHV4-4A0A075B6R2 117 aa13.79□□□□□ -0.2
CLN3-258ENST00000637184 M0R381 172 aa13.79□□□□□ -0.2
CLN3-258ENST00000637184 UBE2CO00762 179 aa13.79□□□□□ -0.2
CLN3-258ENST00000637184 SPRY2O43597 315 aa13.79□□□□□ -0.2
CLN3-258ENST00000637184 KPRPQ5T749 579 aaPredicted RBP13.79□□□□□ -0.2
CLN3-258ENST00000637184 FRZBQ92765 325 aa13.79□□□□□ -0.2
CLN3-258ENST00000637184 MSRB1Q9NZV6 116 aa13.79□□□□□ -0.2
CLN3-258ENST00000637184 MUC4Q99102 2169 aa13.79□□□□□ -0.2
CLN3-258ENST00000637184 HLA-DQA1P01909 254 aa13.78□□□□□ -0.2
CLN3-258ENST00000637184 TRGC2P03986 189 aa13.78□□□□□ -0.2
CLN3-258ENST00000637184 AZU1P20160 251 aa13.78□□□□□ -0.2
CLN3-258ENST00000637184 FABP9Q0Z7S8 132 aa13.78□□□□□ -0.2
CLN3-258ENST00000637184 ZFP82Q8N141 532 aa13.78□□□□□ -0.2
CLN3-258ENST00000637184 MRPL18Q9H0U6 180 aaKnown RBP13.78□□□□□ -0.2
CLN3-258ENST00000637184 NBEAL1Q6ZS30 2694 aa13.78□□□□□ -0.2
CLN3-258ENST00000637184 RRN3P1Q2M238 152 aa13.77□□□□□ -0.21
CLN3-258ENST00000637184 DMRTA1Q5VZB9 504 aa13.77□□□□□ -0.21
CLN3-258ENST00000637184 C11orf72Q8NBR9 251 aa13.77□□□□□ -0.21
CLN3-258ENST00000637184 TMEM263Q8WUH6 116 aaKnown RBP13.77□□□□□ -0.21
CLN3-258ENST00000637184 GSN-AS1Q9NRJ2 163 aa13.77□□□□□ -0.21
CLN3-258ENST00000637184 DEFB135Q30KP9 77 aa13.76□□□□□ -0.21
CLN3-258ENST00000637184 GATD1Q8NB37 220 aa13.76□□□□□ -0.21
CLN3-258ENST00000637184 SYT8Q8NBV8 401 aa13.76□□□□□ -0.21
CLN3-258ENST00000637184 RCHY1Q96PM5 261 aa13.76□□□□□ -0.21
CLN3-258ENST00000637184 C1orf196B1AJZ1 125 aa13.76□□□□□ -0.21
CLN3-258ENST00000637184 ZNF493Q6ZR52 646 aa13.76□□□□□ -0.21
CLN3-258ENST00000637184 SMIM15Q7Z3B0 74 aa13.76□□□□□ -0.21
CLN3-258ENST00000637184 RNASE8Q8TDE3 154 aaKnown RBP13.76□□□□□ -0.21
CLN3-258ENST00000637184 NXPH4O95158 308 aa13.75□□□□□ -0.21
CLN3-258ENST00000637184 C16orf74Q96GX8 76 aa13.75□□□□□ -0.21
CLN3-258ENST00000637184 SPXQ9BT56 116 aa13.75□□□□□ -0.21
CLN3-258ENST00000637184 APCSP02743 223 aa13.74□□□□□ -0.21
CLN3-258ENST00000637184 PRB2P02812 416 aaPredicted RBP13.74□□□□□ -0.21
CLN3-258ENST00000637184 TRGC1P0CF51 173 aa13.74□□□□□ -0.21
CLN3-258ENST00000637184 Q6ZWC4 215 aa13.74□□□□□ -0.21
CLN3-258ENST00000637184 TMEM191AQ9H0A3 160 aa13.74□□□□□ -0.21
CLN3-258ENST00000637184 M0R2P5 195 aa13.73□□□□□ -0.21
CLN3-258ENST00000637184 SLAQ13239 276 aa13.73□□□□□ -0.21
CLN3-258ENST00000637184 ZNF876PQ49A33 203 aa13.73□□□□□ -0.21
CLN3-258ENST00000637184 TMA7Q9Y2S6 64 aaKnown RBP13.73□□□□□ -0.21
CLN3-258ENST00000637184 SMIM9A6NGZ8 99 aa13.73□□□□□ -0.21
CLN3-258ENST00000637184 EVI2AP22794 236 aa13.73□□□□□ -0.21
CLN3-258ENST00000637184 PHOX2AO14813 284 aa13.72□□□□□ -0.21
CLN3-258ENST00000637184 AP1S3Q96PC3 154 aa13.72□□□□□ -0.21
CLN3-258ENST00000637184 X6R8D5 127 aa13.72□□□□□ -0.21
CLN3-258ENST00000637184 NBEAL2Q6ZNJ1 2754 aa13.72□□□□□ -0.21
CLN3-258ENST00000637184 RAB5BP61020 215 aa13.71□□□□□ -0.21
CLN3-258ENST00000637184 AMN1Q8IY45 258 aa13.71□□□□□ -0.21
CLN3-258ENST00000637184 IL17DQ8TAD2 202 aa13.71□□□□□ -0.21
CLN3-258ENST00000637184 RNF183Q96D59 192 aa13.71□□□□□ -0.21
CLN3-258ENST00000637184 K7EIL1 84 aa13.71□□□□□ -0.22
CLN3-258ENST00000637184 KIAA1644Q3SXP7 199 aa13.71□□□□□ -0.22
CLN3-258ENST00000637184 FAM104BQ5XKR9 115 aa13.71□□□□□ -0.22
CLN3-258ENST00000637184 OR11H2Q8NH07 326 aa13.71□□□□□ -0.22
CLN3-258ENST00000637184 PTH2Q96A98 100 aa13.71□□□□□ -0.22
CLN3-258ENST00000637184 PIK3CD-AS1Q5SR53 167 aa13.7□□□□□ -0.22
CLN3-258ENST00000637184 C14orf178Q8N769 122 aaPredicted RBP13.7□□□□□ -0.22
CLN3-258ENST00000637184 DAZ2Q13117 558 aaKnown RBP13.69□□□□□ -0.22
CLN3-258ENST00000637184 DPH3P1Q9H4G8 78 aa13.69□□□□□ -0.22
CLN3-258ENST00000637184 DNHD1Q96M86 4753 aa13.69□□□□□ -0.22
CLN3-258ENST00000637184 PLAC8L1A1L4L8 177 aa13.68□□□□□ -0.22
CLN3-258ENST00000637184 SMIM17P0DL12 118 aa13.68□□□□□ -0.22
CLN3-258ENST00000637184 JPT2Q9H910 190 aa13.68□□□□□ -0.22
CLN3-258ENST00000637184 NOP10Q9NPE3 64 aaKnown RBP13.68□□□□□ -0.22
CLN3-258ENST00000637184 MRPL16Q9NX20 251 aaKnown RBP13.68□□□□□ -0.22
CLN3-258ENST00000637184 RAB4AP20338 218 aa13.68□□□□□ -0.22
CLN3-258ENST00000637184 DEFB121Q5J5C9 76 aa13.68□□□□□ -0.22
CLN3-258ENST00000637184 TRGV1A0A0A0MS02 117 aa13.67□□□□□ -0.22
CLN3-258ENST00000637184 HIST1H2BKO60814 126 aa13.67□□□□□ -0.22
CLN3-258ENST00000637184 HIST1H2BJP06899 126 aa13.67□□□□□ -0.22
CLN3-258ENST00000637184 HIST1H2BOP23527 126 aa13.67□□□□□ -0.22
CLN3-258ENST00000637184 HIST1H2BBP33778 126 aa13.67□□□□□ -0.22
CLN3-258ENST00000637184 HIST1H2BDP58876 126 aa13.67□□□□□ -0.22
CLN3-258ENST00000637184 HIST1H2BCP62807 126 aa13.67□□□□□ -0.22
CLN3-258ENST00000637184 HIST2H2BEQ16778 126 aa13.67□□□□□ -0.22
CLN3-258ENST00000637184 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.67□□□□□ -0.22
CLN3-258ENST00000637184 RASL10AQ92737 203 aa13.67□□□□□ -0.22
CLN3-258ENST00000637184 HIST1H2BHQ93079 126 aa13.67□□□□□ -0.22
CLN3-258ENST00000637184 RNF185Q96GF1 192 aa13.67□□□□□ -0.22
CLN3-258ENST00000637184 HIST1H2BNQ99877 126 aa13.67□□□□□ -0.22
CLN3-258ENST00000637184 HIST1H2BMQ99879 126 aa13.67□□□□□ -0.22
CLN3-258ENST00000637184 EMP1P54849 157 aa13.66□□□□□ -0.22
CLN3-258ENST00000637184 LGALS9BQ3B8N2 356 aa13.66□□□□□ -0.22
CLN3-258ENST00000637184 MRPL51Q4U2R6 128 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms