RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 NUPR1O60356 82 aa12.37□□□□□ -0.43
CLN3-252ENST00000636907 LINC00310P59036 64 aa12.37□□□□□ -0.43
CLN3-252ENST00000636907 IQCJQ1A5X6 159 aa12.37□□□□□ -0.43
CLN3-252ENST00000636907 Q8N1Y9 231 aa12.37□□□□□ -0.43
CLN3-252ENST00000636907 PHLDA3Q9Y5J5 127 aa12.37□□□□□ -0.43
CLN3-252ENST00000636907 IGHV3-16A0A0C4DH30 117 aa12.36□□□□□ -0.43
CLN3-252ENST00000636907 M0R381 172 aa12.35□□□□□ -0.43
CLN3-252ENST00000636907 SERF1AO75920 110 aa12.35□□□□□ -0.43
CLN3-252ENST00000636907 S100A2P29034 98 aa12.35□□□□□ -0.43
CLN3-252ENST00000636907 MRPL51Q4U2R6 128 aaKnown RBP12.35□□□□□ -0.43
CLN3-252ENST00000636907 DMRTA1Q5VZB9 504 aa12.35□□□□□ -0.43
CLN3-252ENST00000636907 MAST4O15021 2626 aa12.35□□□□□ -0.43
CLN3-252ENST00000636907 INSP01308 110 aa12.35□□□□□ -0.43
CLN3-252ENST00000636907 EVI2AP22794 236 aa12.35□□□□□ -0.43
CLN3-252ENST00000636907 WFDC9Q8NEX5 89 aa12.35□□□□□ -0.43
CLN3-252ENST00000636907 RNF185Q96GF1 192 aa12.35□□□□□ -0.43
CLN3-252ENST00000636907 RCHY1Q96PM5 261 aa12.35□□□□□ -0.43
CLN3-252ENST00000636907 MDFICQ9P1T7 246 aa12.35□□□□□ -0.43
CLN3-252ENST00000636907 FBN1P35555 2871 aaKnown RBP12.34□□□□□ -0.43
CLN3-252ENST00000636907 AMBPP02760 352 aa12.34□□□□□ -0.43
CLN3-252ENST00000636907 RAB4AP20338 218 aa12.34□□□□□ -0.43
CLN3-252ENST00000636907 C9orf85Q96MD7 179 aa12.34□□□□□ -0.43
CLN3-252ENST00000636907 XCL2Q9UBD3 114 aa12.34□□□□□ -0.43
CLN3-252ENST00000636907 CBY3A6NI87 242 aa12.33□□□□□ -0.44
CLN3-252ENST00000636907 D6R8Y8 96 aa12.33□□□□□ -0.44
CLN3-252ENST00000636907 NXPH4O95158 308 aa12.33□□□□□ -0.44
CLN3-252ENST00000636907 FABP4P15090 132 aa12.33□□□□□ -0.44
CLN3-252ENST00000636907 SMIM15Q7Z3B0 74 aa12.33□□□□□ -0.44
CLN3-252ENST00000636907 C3orf56Q8N813 242 aa12.33□□□□□ -0.44
CLN3-252ENST00000636907 HIST1H2BLQ99880 126 aa12.33□□□□□ -0.44
CLN3-252ENST00000636907 MCRIP2Q9BUT9 160 aaKnown RBP12.33□□□□□ -0.44
CLN3-252ENST00000636907 U3KQK5 164 aa12.33□□□□□ -0.44
CLN3-252ENST00000636907 TRGV11A0A075B6L2 103 aa12.32□□□□□ -0.44
CLN3-252ENST00000636907 ESDP10768 282 aa12.32□□□□□ -0.44
CLN3-252ENST00000636907 NUTF2P61970 127 aaKnown RBP12.32□□□□□ -0.44
CLN3-252ENST00000636907 C20orf144Q9BQM9 153 aa12.32□□□□□ -0.44
CLN3-252ENST00000636907 SMKR1H3BMG3 65 aa12.32□□□□□ -0.44
CLN3-252ENST00000636907 PRM2P04554 102 aa12.32□□□□□ -0.44
CLN3-252ENST00000636907 HTN1P15515 57 aa12.32□□□□□ -0.44
CLN3-252ENST00000636907 IGLL1P15814 213 aa12.32□□□□□ -0.44
CLN3-252ENST00000636907 RPL35AP18077 110 aaKnown RBP12.32□□□□□ -0.44
CLN3-252ENST00000636907 DEFB125Q8N687 156 aa12.32□□□□□ -0.44
CLN3-252ENST00000636907 LINC01587Q99440 93 aa12.32□□□□□ -0.44
CLN3-252ENST00000636907 MUC4Q99102 2169 aa12.31□□□□□ -0.44
CLN3-252ENST00000636907 C12orf54Q6X4T0 127 aa12.31□□□□□ -0.44
CLN3-252ENST00000636907 GTSCR1Q86UQ5 136 aa12.31□□□□□ -0.44
CLN3-252ENST00000636907 ORMDL3Q8N138 153 aa12.31□□□□□ -0.44
CLN3-252ENST00000636907 NCR2O95944 276 aa12.3□□□□□ -0.44
CLN3-252ENST00000636907 GIG44P09565 113 aaPredicted RBP12.3□□□□□ -0.44
CLN3-252ENST00000636907 CKS2P33552 79 aa12.3□□□□□ -0.44
CLN3-252ENST00000636907 SHISA2Q6UWI4 295 aa12.3□□□□□ -0.44
CLN3-252ENST00000636907 C1orf158Q8N1D5 194 aa12.3□□□□□ -0.44
CLN3-252ENST00000636907 PRELID3AQ96N28 172 aa12.3□□□□□ -0.44
CLN3-252ENST00000636907 LINC00467Q9BRT7 94 aa12.3□□□□□ -0.44
CLN3-252ENST00000636907 C14orf178Q8N769 122 aaPredicted RBP12.29□□□□□ -0.44
CLN3-252ENST00000636907 OR10D4PQ8NGN7 298 aa12.29□□□□□ -0.44
CLN3-252ENST00000636907 TMEM158Q8WZ71 300 aa12.29□□□□□ -0.44
CLN3-252ENST00000636907 URB1-AS1Q96HZ7 61 aa12.29□□□□□ -0.44
CLN3-252ENST00000636907 TRRAPQ9Y4A5 3859 aa12.29□□□□□ -0.44
CLN3-252ENST00000636907 GAS8-AS1O95177 125 aa12.29□□□□□ -0.44
CLN3-252ENST00000636907 NIT1Q86X76 327 aa12.29□□□□□ -0.44
CLN3-252ENST00000636907 TMEM18Q96B42 140 aa12.29□□□□□ -0.44
CLN3-252ENST00000636907 PACRGQ96M98 296 aaPredicted RBP12.29□□□□□ -0.44
CLN3-252ENST00000636907 AP1S3Q96PC3 154 aa12.29□□□□□ -0.44
CLN3-252ENST00000636907 RNASEKQ6P5S7 137 aaKnown RBP12.28□□□□□ -0.44
CLN3-252ENST00000636907 TMEM208Q9BTX3 173 aa12.28□□□□□ -0.44
CLN3-252ENST00000636907 DPH3P1Q9H4G8 78 aa12.28□□□□□ -0.44
CLN3-252ENST00000636907 WIPF1O43516 503 aa12.27□□□□□ -0.45
CLN3-252ENST00000636907 NPYP01303 97 aa12.27□□□□□ -0.45
CLN3-252ENST00000636907 PPBPP02775 128 aa12.27□□□□□ -0.45
CLN3-252ENST00000636907 MORN3Q6PF18 240 aaPredicted RBP12.27□□□□□ -0.45
CLN3-252ENST00000636907 JPT2Q9H910 190 aa12.27□□□□□ -0.45
CLN3-252ENST00000636907 IGHV3OR16-12A0A075B7B8 117 aa12.26□□□□□ -0.45
CLN3-252ENST00000636907 GATA1P15976 413 aaPredicted RBP12.26□□□□□ -0.45
CLN3-252ENST00000636907 SYT8Q8NBV8 401 aa12.26□□□□□ -0.45
CLN3-252ENST00000636907 NOTCH3Q9UM47 2321 aa12.26□□□□□ -0.45
CLN3-252ENST00000636907 TRAV26-2A0A0B4J265 109 aa12.26□□□□□ -0.45
CLN3-252ENST00000636907 ZNF415Q09FC8 603 aa12.26□□□□□ -0.45
CLN3-252ENST00000636907 SAMD10Q9BYL1 202 aa12.26□□□□□ -0.45
CLN3-252ENST00000636907 KIF25-AS1Q9Y6Z4 181 aa12.26□□□□□ -0.45
CLN3-252ENST00000636907 PMCHP20382 165 aa12.25□□□□□ -0.45
CLN3-252ENST00000636907 FAM19A2Q8N3H0 131 aa12.25□□□□□ -0.45
CLN3-252ENST00000636907 C11orf72Q8NBR9 251 aa12.25□□□□□ -0.45
CLN3-252ENST00000636907 C1QTNF4Q9BXJ3 329 aa12.25□□□□□ -0.45
CLN3-252ENST00000636907 GSN-AS1Q9NRJ2 163 aa12.25□□□□□ -0.45
CLN3-252ENST00000636907 LOC389332A0A1B0GUA5 103 aa12.24□□□□□ -0.45
CLN3-252ENST00000636907 HSBP1O75506 76 aa12.24□□□□□ -0.45
CLN3-252ENST00000636907 TNFRSF6BO95407 300 aa12.24□□□□□ -0.45
CLN3-252ENST00000636907 MGPP08493 103 aa12.24□□□□□ -0.45
CLN3-252ENST00000636907 LINC00614P0C842 121 aa12.24□□□□□ -0.45
CLN3-252ENST00000636907 AZU1P20160 251 aa12.24□□□□□ -0.45
CLN3-252ENST00000636907 AMTP48728 403 aa12.24□□□□□ -0.45
CLN3-252ENST00000636907 LINC00315P59091 139 aa12.24□□□□□ -0.45
CLN3-252ENST00000636907 ZNF876PQ49A33 203 aa12.24□□□□□ -0.45
CLN3-252ENST00000636907 CSNK1G2-AS1Q8NCQ2 148 aa12.24□□□□□ -0.45
CLN3-252ENST00000636907 CHCHD1Q96BP2 118 aaKnown RBP12.24□□□□□ -0.45
CLN3-252ENST00000636907 A0A087WWL8 130 aa12.23□□□□□ -0.45
CLN3-252ENST00000636907 SMIM17P0DL12 118 aa12.23□□□□□ -0.45
CLN3-252ENST00000636907 POM121L12Q8N7R1 296 aa12.23□□□□□ -0.45
CLN3-252ENST00000636907 MRAP2Q96G30 205 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms