RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 KRBOX1C9JBD0 128 aa11.21□□□□□ -0.61
LSM4-206ENST00000600289 PAX4O43316 350 aa11.21□□□□□ -0.61
LSM4-206ENST00000600289 IFNA1P01562 189 aa11.21□□□□□ -0.61
LSM4-206ENST00000600289 LINC01559Q495D7 138 aa11.21□□□□□ -0.61
LSM4-206ENST00000600289 ZNF876PQ49A33 203 aa11.21□□□□□ -0.61
LSM4-206ENST00000600289 Q6ZR54 194 aa11.21□□□□□ -0.61
LSM4-206ENST00000600289 ZNRF2Q8NHG8 242 aa11.21□□□□□ -0.61
LSM4-206ENST00000600289 UPK3BQ9BT76 320 aa11.21□□□□□ -0.61
LSM4-206ENST00000600289 IL36BQ9NZH7 164 aa11.21□□□□□ -0.61
LSM4-206ENST00000600289 TRGV4A0A0C4DH28 118 aa11.2□□□□□ -0.62
LSM4-206ENST00000600289 B4DEV8 164 aa11.2□□□□□ -0.62
LSM4-206ENST00000600289 TAGLN2P37802 199 aaKnown RBP11.2□□□□□ -0.62
LSM4-206ENST00000600289 ASIPP42127 132 aa11.2□□□□□ -0.62
LSM4-206ENST00000600289 MEF2BQ02080 365 aaPredicted RBP11.2□□□□□ -0.62
LSM4-206ENST00000600289 OR4C5Q8NGB2 326 aa11.2□□□□□ -0.62
LSM4-206ENST00000600289 ICOSQ9Y6W8 199 aa11.2□□□□□ -0.62
LSM4-206ENST00000600289 A0A1B0GVY2 172 aa11.19□□□□□ -0.62
LSM4-206ENST00000600289 RS1O15537 224 aa11.19□□□□□ -0.62
LSM4-206ENST00000600289 PDE6DO43924 150 aa11.19□□□□□ -0.62
LSM4-206ENST00000600289 ORM1P02763 201 aa11.19□□□□□ -0.62
LSM4-206ENST00000600289 SFTA3P0C7M3 94 aa11.19□□□□□ -0.62
LSM4-206ENST00000600289 BCL2P10415 239 aa11.19□□□□□ -0.62
LSM4-206ENST00000600289 MRPS16Q9Y3D3 137 aaKnown RBP11.19□□□□□ -0.62
LSM4-206ENST00000600289 PGPEP1LA6NFU8 196 aa11.18□□□□□ -0.62
LSM4-206ENST00000600289 CXCL1P09341 107 aa11.18□□□□□ -0.62
LSM4-206ENST00000600289 S100A4P26447 101 aaKnown RBP11.18□□□□□ -0.62
LSM4-206ENST00000600289 RPL35P42766 123 aaKnown RBP11.18□□□□□ -0.62
LSM4-206ENST00000600289 ESRGQ1W209 222 aa11.18□□□□□ -0.62
LSM4-206ENST00000600289 ZNF506Q5JVG8 444 aa11.18□□□□□ -0.62
LSM4-206ENST00000600289 CFAP126Q5VTH2 177 aa11.18□□□□□ -0.62
LSM4-206ENST00000600289 ZNF575Q86XF7 245 aa11.18□□□□□ -0.62
LSM4-206ENST00000600289 BAGE2Q86Y30 109 aa11.18□□□□□ -0.62
LSM4-206ENST00000600289 SMIM12Q96EX1 92 aa11.18□□□□□ -0.62
LSM4-206ENST00000600289 C9JCJ5 164 aa11.17□□□□□ -0.62
LSM4-206ENST00000600289 GATA1P15976 413 aaPredicted RBP11.17□□□□□ -0.62
LSM4-206ENST00000600289 BLOC1S1P78537 153 aa11.17□□□□□ -0.62
LSM4-206ENST00000600289 MRPL23Q16540 153 aaKnown RBP11.17□□□□□ -0.62
LSM4-206ENST00000600289 ALKAL2Q6UX46 152 aa11.17□□□□□ -0.62
LSM4-206ENST00000600289 NHLRC2Q8NBF2 726 aa11.17□□□□□ -0.62
LSM4-206ENST00000600289 LYPD6BQ8NI32 183 aa11.17□□□□□ -0.62
LSM4-206ENST00000600289 SCRT2Q9NQ03 307 aa11.17□□□□□ -0.62
LSM4-206ENST00000600289 VAX2Q9UIW0 290 aa11.17□□□□□ -0.62
LSM4-206ENST00000600289 IGLV2-18A0A075B6J9 118 aa11.16□□□□□ -0.62
LSM4-206ENST00000600289 M0R036 132 aa11.16□□□□□ -0.62
LSM4-206ENST00000600289 NKX2-5P52952 324 aaPredicted RBP11.16□□□□□ -0.62
LSM4-206ENST00000600289 DERL1Q9BUN8 251 aa11.16□□□□□ -0.62
LSM4-206ENST00000600289 NBDYA0A0U1RRE5 68 aa11.15□□□□□ -0.62
LSM4-206ENST00000600289 A8MWV9 139 aa11.15□□□□□ -0.62
LSM4-206ENST00000600289 H3BVH4 76 aa11.15□□□□□ -0.62
LSM4-206ENST00000600289 K7EQD1 137 aa11.15□□□□□ -0.62
LSM4-206ENST00000600289 ZFP2Q6ZN57 461 aa11.15□□□□□ -0.62
LSM4-206ENST00000600289 LINC00336Q6ZUF6 198 aa11.15□□□□□ -0.62
LSM4-206ENST00000600289 TRBV6-4A0A1B0GX49 114 aa11.14□□□□□ -0.63
LSM4-206ENST00000600289 M0R2N4 97 aa11.14□□□□□ -0.63
LSM4-206ENST00000600289 ARMS2P0C7Q2 107 aa11.14□□□□□ -0.63
LSM4-206ENST00000600289 CENPWQ5EE01 88 aa11.14□□□□□ -0.63
LSM4-206ENST00000600289 PCNPQ8WW12 178 aaKnown RBP11.14□□□□□ -0.63
LSM4-206ENST00000600289 PARLQ9H300 379 aa11.14□□□□□ -0.63
LSM4-206ENST00000600289 IGLV2-8P01709 118 aa11.13□□□□□ -0.63
LSM4-206ENST00000600289 MGST1P10620 155 aaKnown RBP11.13□□□□□ -0.63
LSM4-206ENST00000600289 GYPEP15421 78 aa11.13□□□□□ -0.63
LSM4-206ENST00000600289 SRIP30626 198 aa11.13□□□□□ -0.63
LSM4-206ENST00000600289 NEGR1Q7Z3B1 354 aa11.13□□□□□ -0.63
LSM4-206ENST00000600289 SH2D6Q7Z4S9 175 aa11.13□□□□□ -0.63
LSM4-206ENST00000600289 SYT8Q8NBV8 401 aa11.13□□□□□ -0.63
LSM4-206ENST00000600289 Q9H8V8 135 aa11.13□□□□□ -0.63
LSM4-206ENST00000600289 BOLA1Q9Y3E2 137 aa11.13□□□□□ -0.63
LSM4-206ENST00000600289 A0A1W2PPQ1 181 aa11.12□□□□□ -0.63
LSM4-206ENST00000600289 GRIFINA4D1Z8 144 aa11.12□□□□□ -0.63
LSM4-206ENST00000600289 RTL8CO15255 209 aa11.12□□□□□ -0.63
LSM4-206ENST00000600289 RHOHQ15669 191 aa11.12□□□□□ -0.63
LSM4-206ENST00000600289 UFSP1Q6NVU6 142 aa11.12□□□□□ -0.63
LSM4-206ENST00000600289 LYPD5Q6UWN5 251 aa11.12□□□□□ -0.63
LSM4-206ENST00000600289 SLC25A29Q8N8R3 303 aa11.12□□□□□ -0.63
LSM4-206ENST00000600289 MED9Q9NWA0 146 aa11.12□□□□□ -0.63
LSM4-206ENST00000600289 PHLDA3Q9Y5J5 127 aa11.12□□□□□ -0.63
LSM4-206ENST00000600289 TRBV20OR9-2A0A075B6H5 130 aa11.11□□□□□ -0.63
LSM4-206ENST00000600289 TMSB15BA0A087X1C1 80 aa11.11□□□□□ -0.63
LSM4-206ENST00000600289 RHODO00212 210 aa11.11□□□□□ -0.63
LSM4-206ENST00000600289 NDUFS6O75380 124 aaKnown RBP11.11□□□□□ -0.63
LSM4-206ENST00000600289 NXPH4O95158 308 aa11.11□□□□□ -0.63
LSM4-206ENST00000600289 GNG4P50150 75 aa11.11□□□□□ -0.63
LSM4-206ENST00000600289 TIRAPP58753 221 aa11.11□□□□□ -0.63
LSM4-206ENST00000600289 TTC32Q5I0X7 151 aa11.11□□□□□ -0.63
LSM4-206ENST00000600289 SOHLH1Q5JUK2 328 aa11.11□□□□□ -0.63
LSM4-206ENST00000600289 DMRTA1Q5VZB9 504 aa11.11□□□□□ -0.63
LSM4-206ENST00000600289 ZFP82Q8N141 532 aa11.11□□□□□ -0.63
LSM4-206ENST00000600289 SSBP4Q9BWG4 385 aaPredicted RBP11.11□□□□□ -0.63
LSM4-206ENST00000600289 RAB19A4D1S5 217 aa11.1□□□□□ -0.63
LSM4-206ENST00000600289 TMEM250H0YL14 139 aa11.1□□□□□ -0.63
LSM4-206ENST00000600289 SNAI2O43623 268 aa11.1□□□□□ -0.63
LSM4-206ENST00000600289 OR5AL1P0C617 328 aa11.1□□□□□ -0.63
LSM4-206ENST00000600289 BTF3P20290 206 aaKnown RBP11.1□□□□□ -0.63
LSM4-206ENST00000600289 PRR27Q6MZM9 219 aa11.1□□□□□ -0.63
LSM4-206ENST00000600289 SFRP2Q96HF1 295 aa11.1□□□□□ -0.63
LSM4-206ENST00000600289 PRADC1Q9BSG0 188 aa11.1□□□□□ -0.63
LSM4-206ENST00000600289 BIN3Q9NQY0 253 aa11.1□□□□□ -0.63
LSM4-206ENST00000600289 UBR4Q5T4S7 5183 aa11.1□□□□□ -0.63
LSM4-206ENST00000600289 C19orf71A6NCJ1 209 aa11.09□□□□□ -0.63
LSM4-206ENST00000600289 RBFOX3A6NFN3 312 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 274.2 ms