RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 HIST1H2BKO60814 126 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 GGCTO75223 188 aaKnown RBP2.26□□□□□ -2.05
LINC00560-201ENST00000564593 LYZL6O75951 148 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 S1PR2O95136 353 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 GYPAP02724 150 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 HIST1H2BJP06899 126 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 HIST1H1BP16401 226 aaKnown RBP2.26□□□□□ -2.05
LINC00560-201ENST00000564593 HIST1H2BOP23527 126 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 HIST1H2BBP33778 126 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 G6PCP35575 357 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 GLRXP35754 106 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 EDDM3BP56851 147 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 HIST1H2BDP58876 126 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 HIST1H2BCP62807 126 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 ERHP84090 104 aaKnown RBP2.26□□□□□ -2.05
LINC00560-201ENST00000564593 EDDM3AQ14507 147 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 HIST2H2BEQ16778 126 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.26□□□□□ -2.05
LINC00560-201ENST00000564593 RASL11AQ6T310 242 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 HIST1H2BHQ93079 126 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 SMIM12Q96EX1 92 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 HIST1H2BNQ99877 126 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 HIST1H2BMQ99879 126 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 COMMD5Q9GZQ3 224 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 TRIOO75962 3097 aa2.26□□□□□ -2.05
LINC00560-201ENST00000564593 MAP1BP46821 2468 aaKnown RBP2.25□□□□□ -2.05
LINC00560-201ENST00000564593 CDH23Q9H251 3354 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 TGIF2-C20orf24A0A0A6YYL0 155 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 M0QZK8 103 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 TRGC2P03986 189 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 G0S2P27469 103 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 GNG4P50150 75 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 TPPP2P59282 170 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 HSPE1P61604 102 aaKnown RBP2.25□□□□□ -2.05
LINC00560-201ENST00000564593 TNFAIP6P98066 277 aaPredicted RBP2.25□□□□□ -2.05
LINC00560-201ENST00000564593 PRCDQ00LT1 54 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 VMA21Q3ZAQ7 101 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 MORN2Q502X0 79 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 TOMM20LQ6UXN7 152 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 SPNS3Q6ZMD2 512 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 HIST3H2BBQ8N257 126 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 RPP25LQ8N5L8 163 aaKnown RBP2.25□□□□□ -2.05
LINC00560-201ENST00000564593 OR10D4PQ8NGN7 298 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 OR1L8Q8NGR8 309 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 OR10X1Q8NGY0 326 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 SFRP2Q96HF1 295 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 TMEM14BQ9NUH8 114 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 AMMECR1Q9Y4X0 333 aaPredicted RBP2.25□□□□□ -2.05
LINC00560-201ENST00000564593 SOX21Q9Y651 276 aaPredicted RBP2.25□□□□□ -2.05
LINC00560-201ENST00000564593 LINC00312Q9Y6C7 94 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 PXMP4Q9Y6I8 212 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 DSCAMO60469 2012 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 ZFHX4Q86UP3 3567 aa2.25□□□□□ -2.05
LINC00560-201ENST00000564593 CEP250Q9BV73 2442 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 CNOT1A5YKK6 2376 aaKnown RBP2.24□□□□□ -2.05
LINC00560-201ENST00000564593 IGLV3-9A0A075B6K5 115 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 IGHV1-18A0A0C4DH31 117 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 A0A1W2PRE2 83 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 C17orf98A8MV24 154 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 RBP4P02753 201 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 OR4A8P0C604 315 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 OR10J4P0C629 311 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 TRGC1P0CF51 173 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 ARL14EPLP0DKL9 152 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 FABP4P15090 132 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 DDTP30046 118 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 GCHFRP30047 84 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 CCL20P78556 96 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 ZNF90Q03938 601 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 JOSD1Q15040 202 aaPredicted RBP2.24□□□□□ -2.05
LINC00560-201ENST00000564593 NCMAPQ5T1S8 102 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 MUC15Q8N387 334 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 FER1L6-AS1Q8NA97 138 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 LY6G5BQ8NDX9 201 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 MUC7Q8TAX7 377 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 ZNF714Q96N38 554 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 HIST1H2BLQ99880 126 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 BET1LQ9NYM9 111 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 IDI2-AS1Q9NZ38 188 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 FUT9Q9Y231 359 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 U3KQK5 164 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 OTOGLQ3ZCN5 2332 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 LAMA3Q16787 3333 aa2.24□□□□□ -2.05
LINC00560-201ENST00000564593 CHD6Q8TD26 2715 aa2.23□□□□□ -2.05
LINC00560-201ENST00000564593 C20orf202A1L168 122 aa2.23□□□□□ -2.05
LINC00560-201ENST00000564593 C8orf87E5RJ46 101 aa2.23□□□□□ -2.05
LINC00560-201ENST00000564593 PLXNB1O43157 2135 aa2.23□□□□□ -2.05
LINC00560-201ENST00000564593 NDUFB3O43676 98 aa2.23□□□□□ -2.05
LINC00560-201ENST00000564593 CXCL1P09341 107 aa2.23□□□□□ -2.05
LINC00560-201ENST00000564593 OR5G3P0C626 314 aa2.23□□□□□ -2.05
LINC00560-201ENST00000564593 SAA2P0DJI9 122 aaPredicted RBP2.23□□□□□ -2.05
LINC00560-201ENST00000564593 OR10J1P30954 320 aa2.23□□□□□ -2.05
LINC00560-201ENST00000564593 BRS3P32247 399 aa2.23□□□□□ -2.05
LINC00560-201ENST00000564593 CA7P43166 264 aa2.23□□□□□ -2.05
LINC00560-201ENST00000564593 UBE2L3P68036 154 aaKnown RBP2.23□□□□□ -2.05
LINC00560-201ENST00000564593 TFF3Q07654 80 aa2.23□□□□□ -2.05
LINC00560-201ENST00000564593 MMDQ15546 238 aa2.23□□□□□ -2.05
LINC00560-201ENST00000564593 FAM78BQ5VT40 261 aa2.23□□□□□ -2.05
LINC00560-201ENST00000564593 TEX36Q5VZQ5 186 aa2.23□□□□□ -2.05
LINC00560-201ENST00000564593 HCP5Q6MZN7 132 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms