RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 IGHV3-30-3P0DP02 117 aa6.82□□□□□ -1.32
YBX3-208ENST00000540447 Q8N976 141 aa6.82□□□□□ -1.32
YBX3-208ENST00000540447 C9orf106Q8NAJ2 232 aa6.82□□□□□ -1.32
YBX3-208ENST00000540447 DOCK10Q96BY6 2186 aa6.82□□□□□ -1.32
YBX3-208ENST00000540447 USMG5Q96IX5 58 aa6.82□□□□□ -1.32
YBX3-208ENST00000540447 DYSFO75923 2080 aa6.82□□□□□ -1.32
YBX3-208ENST00000540447 IGLV3-12A0A075B6K2 115 aa6.81□□□□□ -1.32
YBX3-208ENST00000540447 BPY2O14599 106 aa6.81□□□□□ -1.32
YBX3-208ENST00000540447 TRPM7Q96QT4 1865 aa6.81□□□□□ -1.32
YBX3-208ENST00000540447 IGLV2-8P01709 118 aa6.81□□□□□ -1.32
YBX3-208ENST00000540447 PATE2Q6UY27 113 aa6.81□□□□□ -1.32
YBX3-208ENST00000540447 ARID2Q68CP9 1835 aa6.81□□□□□ -1.32
YBX3-208ENST00000540447 GNLYP22749 145 aa6.81□□□□□ -1.32
YBX3-208ENST00000540447 ZNF831Q5JPB2 1677 aa6.81□□□□□ -1.32
YBX3-208ENST00000540447 IGHV1-69P01742 117 aa6.81□□□□□ -1.32
YBX3-208ENST00000540447 C15orf65H3BRN8 121 aa6.81□□□□□ -1.32
YBX3-208ENST00000540447 DEFB124Q8NES8 71 aa6.81□□□□□ -1.32
YBX3-208ENST00000540447 TMEM178BH3BS89 294 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 NCR3O14931 201 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 Q6JHZ5 121 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 VMO1Q7Z5L0 202 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 LYNX1G3V0Z9 82 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 LYNX1P0DP58 116 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 MINOS1Q5TGZ0 78 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 SCXQ7RTU7 201 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 MINOS1-NBL1R4GNA1 71 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 ARHGAP21Q5T5U3 1957 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 C4orf26Q17RF5 130 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 LINC01560Q8TB33 94 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 TPSG1Q9NRR2 321 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 LENEPQ9Y5L5 61 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 TEX22C9J3V5 150 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 C17orf58Q2M2W7 97 aa6.8□□□□□ -1.32
YBX3-208ENST00000540447 MRPL53Q96EL3 112 aaKnown RBP6.8□□□□□ -1.32
YBX3-208ENST00000540447 OVOL3O00110 214 aa6.79□□□□□ -1.32
YBX3-208ENST00000540447 MIFP14174 115 aa6.79□□□□□ -1.32
YBX3-208ENST00000540447 SIRPDQ9H106 197 aa6.79□□□□□ -1.32
YBX3-208ENST00000540447 PROK2Q9HC23 129 aa6.79□□□□□ -1.32
YBX3-208ENST00000540447 IGLV3-1P01715 115 aa6.79□□□□□ -1.32
YBX3-208ENST00000540447 FAM110DQ8TAY7 271 aaPredicted RBP6.79□□□□□ -1.32
YBX3-208ENST00000540447 PRSS22Q9GZN4 317 aa6.79□□□□□ -1.32
YBX3-208ENST00000540447 TNRC6BQ9UPQ9 1833 aaKnown RBP6.79□□□□□ -1.32
YBX3-208ENST00000540447 A0A1W2PRX2 142 aa6.79□□□□□ -1.32
YBX3-208ENST00000540447 TIRAPP58753 221 aa6.79□□□□□ -1.32
YBX3-208ENST00000540447 GTF3C1Q12789 2109 aa6.79□□□□□ -1.32
YBX3-208ENST00000540447 H7C423 109 aa6.79□□□□□ -1.32
YBX3-208ENST00000540447 CMC4P56277 68 aaPredicted RBP6.79□□□□□ -1.32
YBX3-208ENST00000540447 DEFB131AP59861 70 aa6.79□□□□□ -1.32
YBX3-208ENST00000540447 FAM19A3Q7Z5A8 133 aa6.79□□□□□ -1.32
YBX3-208ENST00000540447 MIR7-3HGQ8N6C7 128 aa6.79□□□□□ -1.32
YBX3-208ENST00000540447 TRBV6-1A0A0K0K1D8 114 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 LINC01619G3V211 115 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 NDUFB1O75438 58 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 XCL1P47992 114 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 C5orf38Q86SI9 138 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 NEXN-AS1Q8NBZ9 246 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 PINLYPA6NC86 204 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 PATE3B3GLJ2 98 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 LST1O00453 97 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 IGHV3-30P01768 117 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 IGHV3-30-5P0DP03 117 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 MYO7BQ6PIF6 2116 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 MYOFQ9NZM1 2061 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 TRAV7A0A075B6U4 112 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 CFHR3Q02985 330 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 CDIP1Q9H305 208 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 RALGAPA2Q2PPJ7 1873 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 ATP1A1-AS1Q5TC04 95 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 ABCA1O95477 2261 aa6.78□□□□□ -1.32
YBX3-208ENST00000540447 TRBV7-3A0A075B6L6 115 aa6.77□□□□□ -1.33
YBX3-208ENST00000540447 MBD6Q96DN6 1003 aa6.77□□□□□ -1.33
YBX3-208ENST00000540447 C7orf69Q9H7B7 122 aa6.77□□□□□ -1.33
YBX3-208ENST00000540447 GREB1Q4ZG55 1949 aa6.77□□□□□ -1.33
YBX3-208ENST00000540447 MBD3L4A6NDZ8 208 aaPredicted RBP6.77□□□□□ -1.33
YBX3-208ENST00000540447 MBD3L3A6NE82 208 aaPredicted RBP6.77□□□□□ -1.33
YBX3-208ENST00000540447 MBD3L5A6NJ08 208 aaPredicted RBP6.77□□□□□ -1.33
YBX3-208ENST00000540447 RNASE6Q93091 150 aaKnown RBP6.77□□□□□ -1.33
YBX3-208ENST00000540447 LRCOL1A6NCL2 159 aa6.77□□□□□ -1.33
YBX3-208ENST00000540447 RPS28P62857 69 aaKnown RBP6.77□□□□□ -1.33
YBX3-208ENST00000540447 DEFB130BP0DP73 79 aa6.77□□□□□ -1.33
YBX3-208ENST00000540447 DEFB130AP0DP74 79 aa6.77□□□□□ -1.33
YBX3-208ENST00000540447 LINC00310P59036 64 aa6.77□□□□□ -1.33
YBX3-208ENST00000540447 AKAP6Q13023 2319 aa6.77□□□□□ -1.33
YBX3-208ENST00000540447 RSPO1Q2MKA7 263 aaPredicted RBP6.77□□□□□ -1.33
YBX3-208ENST00000540447 SERTAD4-AS1Q5TG53 156 aa6.76□□□□□ -1.33
YBX3-208ENST00000540447 CLPSL2Q6UWE3 100 aa6.76□□□□□ -1.33
YBX3-208ENST00000540447 LINC00322Q6ZN03 302 aaPredicted RBP6.76□□□□□ -1.33
YBX3-208ENST00000540447 PLA2G5P39877 138 aa6.76□□□□□ -1.33
YBX3-208ENST00000540447 DIAPH2-AS1Q14236 149 aa6.76□□□□□ -1.33
YBX3-208ENST00000540447 ODF3L1Q8IXM7 274 aa6.76□□□□□ -1.33
YBX3-208ENST00000540447 PRR15LQ9BU68 103 aa6.76□□□□□ -1.33
YBX3-208ENST00000540447 BTAF1O14981 1849 aa6.76□□□□□ -1.33
YBX3-208ENST00000540447 ADAMTSL1Q8N6G6 1762 aa6.76□□□□□ -1.33
YBX3-208ENST00000540447 SLPIP03973 132 aa6.76□□□□□ -1.33
YBX3-208ENST00000540447 PRR4Q16378 134 aa6.76□□□□□ -1.33
YBX3-208ENST00000540447 LYPD2Q6UXB3 125 aa6.76□□□□□ -1.33
YBX3-208ENST00000540447 XCL2Q9UBD3 114 aa6.76□□□□□ -1.33
YBX3-208ENST00000540447 SAP25Q8TEE9 199 aa6.76□□□□□ -1.33
YBX3-208ENST00000540447 AJUBAQ96IF1 538 aa6.76□□□□□ -1.33
YBX3-208ENST00000540447 SPRR3Q9UBC9 169 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms