RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 ARL3P36405 182 aa9.55□□□□□ -0.88
SFSWAP-208ENST00000539506 RAB9AP51151 201 aa9.55□□□□□ -0.88
SFSWAP-208ENST00000539506 LINC01559Q495D7 138 aa9.55□□□□□ -0.88
SFSWAP-208ENST00000539506 C8orf86Q6ZUL3 223 aa9.55□□□□□ -0.88
SFSWAP-208ENST00000539506 MRPL16Q9NX20 251 aaKnown RBP9.55□□□□□ -0.88
SFSWAP-208ENST00000539506 U3KQE9 123 aa9.55□□□□□ -0.88
SFSWAP-208ENST00000539506 CSPG4Q6UVK1 2322 aa9.55□□□□□ -0.88
SFSWAP-208ENST00000539506 PRSS29PA6NIE9 313 aa9.54□□□□□ -0.88
SFSWAP-208ENST00000539506 SRD5A1P18405 259 aa9.54□□□□□ -0.88
SFSWAP-208ENST00000539506 SRSF9Q13242 221 aaKnown RBP eCLIP9.54□□□□□ -0.88
SFSWAP-208ENST00000539506 SHISA2Q6UWI4 295 aa9.54□□□□□ -0.88
SFSWAP-208ENST00000539506 NRACQ8N912 160 aa9.54□□□□□ -0.88
SFSWAP-208ENST00000539506 EEF1AKMT3Q96AZ1 226 aa9.54□□□□□ -0.88
SFSWAP-208ENST00000539506 IGHV4-61A0A0C4DH41 118 aa9.54□□□□□ -0.88
SFSWAP-208ENST00000539506 SRSF2Q01130 221 aaKnown RBP9.54□□□□□ -0.88
SFSWAP-208ENST00000539506 TM2D2Q9BX73 214 aa9.54□□□□□ -0.88
SFSWAP-208ENST00000539506 TRBV7-1A0A0A6YYK4 115 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 OR11H12B2RN74 326 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 TMEM78Q5T7P6 136 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 UNQ9165/PRO28630Q6UXU0 137 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 OR11H1Q8NG94 326 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 OR11H2Q8NH07 326 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 C20orf173Q96LM9 149 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 RBAKDNA6NC62 111 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 H7C2G1 150 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 ATP5LO75964 103 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 SLC25A16P16260 332 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 S100A4P26447 101 aaKnown RBP9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 SYT8Q8NBV8 401 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 A0A087WX48 190 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 TRAV41A0A0B4J266 112 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 IGHV4-38-2P0DP08 117 aa9.53□□□□□ -0.88
SFSWAP-208ENST00000539506 IGHV7-4-1A0A0J9YVY3 117 aa9.52□□□□□ -0.89
SFSWAP-208ENST00000539506 CKS1BP61024 79 aa9.52□□□□□ -0.89
SFSWAP-208ENST00000539506 Q6ZS46 218 aa9.52□□□□□ -0.89
SFSWAP-208ENST00000539506 GPHB5Q86YW7 130 aa9.52□□□□□ -0.89
SFSWAP-208ENST00000539506 METTL26Q96S19 204 aa9.52□□□□□ -0.89
SFSWAP-208ENST00000539506 SLC50A1Q9BRV3 221 aa9.52□□□□□ -0.89
SFSWAP-208ENST00000539506 HIGD1BQ9P298 99 aa9.52□□□□□ -0.89
SFSWAP-208ENST00000539506 HOXA3O43365 443 aaPredicted RBP9.52□□□□□ -0.89
SFSWAP-208ENST00000539506 GNRH2O43555 120 aa9.52□□□□□ -0.89
SFSWAP-208ENST00000539506 RRN3P1Q2M238 152 aa9.52□□□□□ -0.89
SFSWAP-208ENST00000539506 IGHV3-64A0A075B6Q5 118 aa9.51□□□□□ -0.89
SFSWAP-208ENST00000539506 IGHV1-69DA0A0B4J2H0 117 aa9.51□□□□□ -0.89
SFSWAP-208ENST00000539506 ZNF815PA8K554 130 aa9.51□□□□□ -0.89
SFSWAP-208ENST00000539506 F8W1H4 67 aa9.51□□□□□ -0.89
SFSWAP-208ENST00000539506 IGHV1-69P01742 117 aa9.51□□□□□ -0.89
SFSWAP-208ENST00000539506 SRSF1Q07955 248 aaKnown RBP eCLIP9.51□□□□□ -0.89
SFSWAP-208ENST00000539506 PRADC1Q9BSG0 188 aa9.51□□□□□ -0.89
SFSWAP-208ENST00000539506 JPT2Q9H910 190 aa9.51□□□□□ -0.89
SFSWAP-208ENST00000539506 MORN3Q6PF18 240 aaPredicted RBP9.51□□□□□ -0.89
SFSWAP-208ENST00000539506 NFE4Q86UQ8 179 aa9.51□□□□□ -0.89
SFSWAP-208ENST00000539506 C16orf92Q96LL3 132 aa9.51□□□□□ -0.89
SFSWAP-208ENST00000539506 MOB4Q9Y3A3 225 aa9.51□□□□□ -0.89
SFSWAP-208ENST00000539506 MYMXA0A1B0GTQ4 84 aa9.51□□□□□ -0.89
SFSWAP-208ENST00000539506 LGALS1P09382 135 aaKnown RBP9.51□□□□□ -0.89
SFSWAP-208ENST00000539506 TRAV26-1A0A087WT03 109 aa9.5□□□□□ -0.89
SFSWAP-208ENST00000539506 LY6EQ16553 131 aa9.5□□□□□ -0.89
SFSWAP-208ENST00000539506 ATP6V0BQ99437 205 aa9.5□□□□□ -0.89
SFSWAP-208ENST00000539506 USP9XQ93008 2570 aaPredicted RBP9.5□□□□□ -0.89
SFSWAP-208ENST00000539506 IGSF10Q6WRI0 2623 aa9.5□□□□□ -0.89
SFSWAP-208ENST00000539506 ZANQ9Y493 2812 aa9.5□□□□□ -0.89
SFSWAP-208ENST00000539506 PIEZO1Q92508 2521 aa9.5□□□□□ -0.89
SFSWAP-208ENST00000539506 LINC01546A6NGU7 62 aa9.5□□□□□ -0.89
SFSWAP-208ENST00000539506 MT-ATP8P03928 68 aa9.5□□□□□ -0.89
SFSWAP-208ENST00000539506 SMCPP49901 116 aaPredicted RBP9.5□□□□□ -0.89
SFSWAP-208ENST00000539506 C9orf47Q6ZRZ4 202 aa9.5□□□□□ -0.89
SFSWAP-208ENST00000539506 TRBV7-3A0A075B6L6 115 aa9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 J3QR89 54 aa9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 FHL3Q13643 280 aa9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 ANXA2RQ3ZCQ2 193 aa9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 KIR2DL4Q99706 377 aa9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 H7C1H1 209 aa9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 IGHV3-11P01762 117 aa9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 RNASE4P34096 147 aaKnown RBP9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 RPL39P62891 51 aaKnown RBP9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 FBN2P35556 2912 aa9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 F8VRH5 84 aa9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 DUSP14O95147 198 aaKnown RBP9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 CRIP2P52943 208 aaPredicted RBP9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 BLCAPP62952 87 aa9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 C2orf66Q6UXQ4 117 aa9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 PRO0461Q9UI25 63 aa9.49□□□□□ -0.89
SFSWAP-208ENST00000539506 RASL10AQ92737 203 aa9.48□□□□□ -0.89
SFSWAP-208ENST00000539506 SMIM2Q9BVW6 85 aa9.48□□□□□ -0.89
SFSWAP-208ENST00000539506 C2CD3Q4AC94 2353 aa9.48□□□□□ -0.89
SFSWAP-208ENST00000539506 A0A087WWL8 130 aa9.48□□□□□ -0.89
SFSWAP-208ENST00000539506 RAX2Q96IS3 184 aa9.48□□□□□ -0.89
SFSWAP-208ENST00000539506 IGHV4-30-2A0A087WSY4 118 aa9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 EDN2P20800 178 aa9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 OPRPNQ99935 248 aaPredicted RBP9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 PHLDA3Q9Y5J5 127 aa9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 FAM223BA6NKX1 122 aa9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 SOCS3O14543 225 aa9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 IGKV3-20P01619 116 aa9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 GATA3P23771 443 aa9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 FAM223AQ8IWN6 122 aa9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 C10orf105Q8TEF2 133 aa9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 MRPL53Q96EL3 112 aaKnown RBP9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 SMPXQ9UHP9 88 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms