RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 S100GP29377 79 aa0.58□□□□□ -2.32
CD44-238ENST00000534296 ETV6P41212 452 aa0.58□□□□□ -2.32
CD44-238ENST00000534296 SMIM15Q7Z3B0 74 aa0.58□□□□□ -2.32
CD44-238ENST00000534296 TMEM35BQ8NCS4 154 aa0.58□□□□□ -2.32
CD44-238ENST00000534296 OR9Q1Q8NGQ5 310 aa0.58□□□□□ -2.32
CD44-238ENST00000534296 SKA2Q8WVK7 121 aaPredicted RBP0.58□□□□□ -2.32
CD44-238ENST00000534296 CLEC2BQ92478 149 aa0.58□□□□□ -2.32
CD44-238ENST00000534296 SMIM7Q9BQ49 75 aa0.58□□□□□ -2.32
CD44-238ENST00000534296 TCOF1Q13428 1488 aaKnown RBP0.58□□□□□ -2.32
CD44-238ENST00000534296 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.58□□□□□ -2.32
CD44-238ENST00000534296 SRRM2Q9UQ35 2752 aaKnown RBP0.57□□□□□ -2.32
CD44-238ENST00000534296 KIAA1107Q9UPP5 1409 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 CTTNBP2Q8WZ74 1663 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 A0A0J9YY99 117 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 A0A1W2PPB8 328 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 A0A1W2PRE2 83 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 A0A1W2PRS3 328 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 KIR3DP1A8MWS1 328 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 GYPBP06028 91 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 ZNF137PP52743 207 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 RPL37AP61513 92 aaKnown RBP0.57□□□□□ -2.32
CD44-238ENST00000534296 C6orf52Q5T4I8 152 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 SAMD13Q5VXD3 122 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 ATOH7Q8N100 152 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 TEX29Q8N6K0 151 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 TCTEX1D1Q8N7M0 179 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 OR8J3Q8NGG0 315 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 DIRC1Q969H9 104 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 RMND5BQ96G75 393 aaPredicted RBP0.57□□□□□ -2.32
CD44-238ENST00000534296 LRTM1Q9HBL6 345 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 LAMA1P25391 3075 aa0.57□□□□□ -2.32
CD44-238ENST00000534296 ADGRG4Q8IZF6 3080 aa0.56□□□□□ -2.32
CD44-238ENST00000534296 SPENQ96T58 3664 aaKnown RBP0.56□□□□□ -2.32
CD44-238ENST00000534296 ZCCHC6Q5VYS8 1495 aaKnown RBP0.56□□□□□ -2.32
CD44-238ENST00000534296 TRBV27A0A0K0K1C4 114 aa0.56□□□□□ -2.32
CD44-238ENST00000534296 PGRMC1O00264 195 aaKnown RBP0.56□□□□□ -2.32
CD44-238ENST00000534296 EDF1O60869 148 aaKnown RBP0.56□□□□□ -2.32
CD44-238ENST00000534296 GTF2A1P52655 376 aaPredicted RBP0.56□□□□□ -2.32
CD44-238ENST00000534296 CAV3P56539 151 aa0.56□□□□□ -2.32
CD44-238ENST00000534296 CCSMST1Q4G0I0 132 aa0.56□□□□□ -2.32
CD44-238ENST00000534296 CCL4L1Q8NHW4 92 aa0.56□□□□□ -2.32
CD44-238ENST00000534296 CCL19Q99731 98 aa0.56□□□□□ -2.32
CD44-238ENST00000534296 DDA1Q9BW61 102 aa0.56□□□□□ -2.32
CD44-238ENST00000534296 TRAPPC2LQ9UL33 140 aa0.56□□□□□ -2.32
CD44-238ENST00000534296 USH2AO75445 5202 aa0.56□□□□□ -2.32
CD44-238ENST00000534296 CADP27708 2225 aa0.56□□□□□ -2.32
CD44-238ENST00000534296 ABCA4P78363 2273 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 ERBINQ96RT1 1412 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 SHANK2Q9UPX8 1470 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 TMEM189A5PLL7 270 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 IFITM5A6NNB3 132 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 TSTD3H0UI37 97 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 CCL4P13236 92 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 PDE6GP18545 87 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 CKS2P33552 79 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 FOXA3P55318 350 aaPredicted RBP0.55□□□□□ -2.32
CD44-238ENST00000534296 SPINK7P58062 85 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 TFAMQ00059 246 aaKnown RBP0.55□□□□□ -2.32
CD44-238ENST00000534296 LINC00269Q8N2A0 174 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 THEM6Q8WUY1 208 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 LIMD2Q9BT23 127 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 CALML5Q9NZT1 146 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 MED31Q9Y3C7 131 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 MPC1Q9Y5U8 109 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 RBBP6Q7Z6E9 1792 aaKnown RBP0.55□□□□□ -2.32
CD44-238ENST00000534296 CUBNO60494 3623 aa0.55□□□□□ -2.32
CD44-238ENST00000534296 PLXNA2O75051 1894 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 DOPEY2Q9Y3R5 2298 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 LRRC7Q96NW7 1537 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 ATG2AQ2TAZ0 1938 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 PTPRQQ9UMZ3 2332 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 KMT2AQ03164 3969 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 TACC2O95359 2948 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 VPS13CQ709C8 3753 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 PNMA8CA0A1B0GUJ8 204 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 IGHV3-30P01768 117 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 IGHV3-30-5P0DP03 117 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 CRYGSP22914 178 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 SDC4P31431 198 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 PSPHP78330 225 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 QRFPP83859 136 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 SPINK13Q1W4C9 94 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 TMEM128Q5BJH2 165 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 UNQ5815/PRO19632Q6UWF5 114 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 TOMM20LQ6UXN7 152 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 IZUMO2Q6UXV1 221 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 IDO2Q6ZQW0 420 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 ZCCHC23Q6ZST2 131 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 SPANXA1Q9NS26 97 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 C19orf12Q9NSK7 152 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 FKBP11Q9NYL4 201 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 HSPB11Q9Y547 144 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 KIDINS220Q9ULH0 1771 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 FAM135BQ49AJ0 1406 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 PTPRMP28827 1452 aa0.54□□□□□ -2.32
CD44-238ENST00000534296 TMEM30CPA0ZSE6 113 aa0.53□□□□□ -2.32
CD44-238ENST00000534296 APOC1P02654 83 aa0.53□□□□□ -2.32
CD44-238ENST00000534296 NBEAP1P0C6P0 100 aa0.53□□□□□ -2.32
CD44-238ENST00000534296 POLR2HP52434 150 aaKnown RBP0.53□□□□□ -2.32
CD44-238ENST00000534296 BLCAPP62952 87 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 159.3 ms