RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 IGHV3-73A0A0B4J1V6 119 aa7.23□□□□□ -1.25
CD44-227ENST00000528086 A0A1B0GV50 99 aa7.23□□□□□ -1.25
CD44-227ENST00000528086 SCO2A0A1W2PP80 73 aa7.23□□□□□ -1.25
CD44-227ENST00000528086 FBLL1A6NHQ2 334 aaKnown RBP7.23□□□□□ -1.25
CD44-227ENST00000528086 K7EQM0 130 aa7.23□□□□□ -1.25
CD44-227ENST00000528086 SH2D1AO60880 128 aa7.23□□□□□ -1.25
CD44-227ENST00000528086 LTAP01374 205 aa7.23□□□□□ -1.25
CD44-227ENST00000528086 LINC00315P59091 139 aa7.23□□□□□ -1.25
CD44-227ENST00000528086 KRTAP10-2P60368 255 aa7.23□□□□□ -1.25
CD44-227ENST00000528086 ZNF674Q2M3X9 581 aa7.23□□□□□ -1.25
CD44-227ENST00000528086 DNLZQ5SXM8 178 aa7.23□□□□□ -1.25
CD44-227ENST00000528086 STOML3Q8TAV4 291 aa7.23□□□□□ -1.25
CD44-227ENST00000528086 FAM213BQ8TBF2 198 aa7.23□□□□□ -1.25
CD44-227ENST00000528086 SFT2D1Q8WV19 159 aa7.23□□□□□ -1.25
CD44-227ENST00000528086 KRTAP4-5Q9BYR2 181 aa7.23□□□□□ -1.25
CD44-227ENST00000528086 A0A1W2PPQ1 181 aa7.22□□□□□ -1.25
CD44-227ENST00000528086 FABP5P3A8MUU1 101 aa7.22□□□□□ -1.25
CD44-227ENST00000528086 SIVA1O15304 175 aa7.22□□□□□ -1.25
CD44-227ENST00000528086 LINC00694P0DN24 101 aa7.22□□□□□ -1.25
CD44-227ENST00000528086 DMRTA1Q5VZB9 504 aa7.22□□□□□ -1.25
CD44-227ENST00000528086 NEGR1Q7Z3B1 354 aa7.22□□□□□ -1.25
CD44-227ENST00000528086 TCTE3Q8IZS6 198 aa7.22□□□□□ -1.25
CD44-227ENST00000528086 NHLRC2Q8NBF2 726 aa7.22□□□□□ -1.25
CD44-227ENST00000528086 MLST8Q9BVC4 326 aa7.22□□□□□ -1.25
CD44-227ENST00000528086 NKX6-2Q9C056 277 aaPredicted RBP7.22□□□□□ -1.25
CD44-227ENST00000528086 SCRT2Q9NQ03 307 aa7.22□□□□□ -1.25
CD44-227ENST00000528086 DNAH8Q96JB1 4490 aa7.21□□□□□ -1.25
CD44-227ENST00000528086 GRIFINA4D1Z8 144 aa7.21□□□□□ -1.26
CD44-227ENST00000528086 UMAD1C9J7I0 102 aa7.21□□□□□ -1.26
CD44-227ENST00000528086 M0R036 132 aa7.21□□□□□ -1.26
CD44-227ENST00000528086 FUSP35637 526 aaKnown RBP eCLIP7.21□□□□□ -1.26
CD44-227ENST00000528086 SOHLH1Q5JUK2 328 aa7.21□□□□□ -1.26
CD44-227ENST00000528086 CST9LP1Q5W188 147 aa7.21□□□□□ -1.26
CD44-227ENST00000528086 PARLQ9H300 379 aa7.21□□□□□ -1.26
CD44-227ENST00000528086 ZFP30Q9Y2G7 519 aa7.21□□□□□ -1.26
CD44-227ENST00000528086 ABCA13Q86UQ4 5058 aa7.2□□□□□ -1.26
CD44-227ENST00000528086 KANTRA0A1W2PQU2 76 aa7.2□□□□□ -1.26
CD44-227ENST00000528086 B4DEV8 164 aa7.2□□□□□ -1.26
CD44-227ENST00000528086 H3BVH4 76 aa7.2□□□□□ -1.26
CD44-227ENST00000528086 DNAH10OSP0CZ25 163 aa7.2□□□□□ -1.26
CD44-227ENST00000528086 SRIP30626 198 aa7.2□□□□□ -1.26
CD44-227ENST00000528086 RPL19P84098 196 aaKnown RBP7.2□□□□□ -1.26
CD44-227ENST00000528086 LINC01559Q495D7 138 aa7.2□□□□□ -1.26
CD44-227ENST00000528086 TTC32Q5I0X7 151 aa7.2□□□□□ -1.26
CD44-227ENST00000528086 Q8N3U1 123 aa7.2□□□□□ -1.26
CD44-227ENST00000528086 FMC1Q96HJ9 113 aa7.2□□□□□ -1.26
CD44-227ENST00000528086 DERL1Q9BUN8 251 aa7.2□□□□□ -1.26
CD44-227ENST00000528086 IL36BQ9NZH7 164 aa7.2□□□□□ -1.26
CD44-227ENST00000528086 FAT1Q14517 4588 aa7.2□□□□□ -1.26
CD44-227ENST00000528086 TRAV1-1A0A0B4J248 108 aa7.19□□□□□ -1.26
CD44-227ENST00000528086 TRBV6-4A0A1B0GX49 114 aa7.19□□□□□ -1.26
CD44-227ENST00000528086 IGLV2-8P01709 118 aa7.19□□□□□ -1.26
CD44-227ENST00000528086 ORM1P02763 201 aa7.19□□□□□ -1.26
CD44-227ENST00000528086 H2AFB1P0C5Y9 115 aa7.19□□□□□ -1.26
CD44-227ENST00000528086 ARMS2P0C7Q2 107 aa7.19□□□□□ -1.26
CD44-227ENST00000528086 MED14OSP0DP75 135 aa7.19□□□□□ -1.26
CD44-227ENST00000528086 PPT1P50897 306 aa7.19□□□□□ -1.26
CD44-227ENST00000528086 TIRAPP58753 221 aa7.19□□□□□ -1.26
CD44-227ENST00000528086 ZFP69Q49AA0 526 aa7.19□□□□□ -1.26
CD44-227ENST00000528086 FAM162BQ5T6X4 162 aa7.19□□□□□ -1.26
CD44-227ENST00000528086 C14orf178Q8N769 122 aaPredicted RBP7.19□□□□□ -1.26
CD44-227ENST00000528086 TCEAL7Q9BRU2 100 aa7.19□□□□□ -1.26
CD44-227ENST00000528086 TMSB15BA0A087X1C1 80 aa7.18□□□□□ -1.26
CD44-227ENST00000528086 C1QBP02746 253 aa7.18□□□□□ -1.26
CD44-227ENST00000528086 CRYGDP07320 174 aa7.18□□□□□ -1.26
CD44-227ENST00000528086 TPT1P13693 172 aaKnown RBP7.18□□□□□ -1.26
CD44-227ENST00000528086 BTF3P20290 206 aaKnown RBP7.18□□□□□ -1.26
CD44-227ENST00000528086 ASIPP42127 132 aa7.18□□□□□ -1.26
CD44-227ENST00000528086 AKR1C3P42330 323 aa7.18□□□□□ -1.26
CD44-227ENST00000528086 SULT1A2P50226 295 aa7.18□□□□□ -1.26
CD44-227ENST00000528086 PIK3CD-AS1Q5SR53 167 aa7.18□□□□□ -1.26
CD44-227ENST00000528086 C9orf62Q8N4C0 152 aa7.18□□□□□ -1.26
CD44-227ENST00000528086 C11orf52Q96A22 123 aa7.18□□□□□ -1.26
CD44-227ENST00000528086 A0A1B0GVG6 124 aa7.17□□□□□ -1.26
CD44-227ENST00000528086 ZFP2Q6ZN57 461 aa7.17□□□□□ -1.26
CD44-227ENST00000528086 SPATA12Q7Z6I5 190 aa7.17□□□□□ -1.26
CD44-227ENST00000528086 TXNDC17Q9BRA2 123 aa7.17□□□□□ -1.26
CD44-227ENST00000528086 TRBV20OR9-2A0A075B6H5 130 aa7.16□□□□□ -1.26
CD44-227ENST00000528086 PFDN1O60925 122 aa7.16□□□□□ -1.26
CD44-227ENST00000528086 UBE2G1P62253 170 aa7.16□□□□□ -1.26
CD44-227ENST00000528086 RHOHQ15669 191 aa7.16□□□□□ -1.26
CD44-227ENST00000528086 BAGE2Q86Y30 109 aa7.16□□□□□ -1.26
CD44-227ENST00000528086 SSBP4Q9BWG4 385 aaPredicted RBP7.16□□□□□ -1.26
CD44-227ENST00000528086 GNG13Q9P2W3 67 aa7.16□□□□□ -1.26
CD44-227ENST00000528086 hCG_2014768A0A024R1R8 64 aa7.15□□□□□ -1.26
CD44-227ENST00000528086 A0A087WWL8 130 aa7.15□□□□□ -1.26
CD44-227ENST00000528086 RAB19A4D1S5 217 aa7.15□□□□□ -1.26
CD44-227ENST00000528086 A8MWV9 139 aa7.15□□□□□ -1.26
CD44-227ENST00000528086 C16orf90A8MZG2 172 aa7.15□□□□□ -1.26
CD44-227ENST00000528086 CIDEAO60543 219 aa7.15□□□□□ -1.26
CD44-227ENST00000528086 MGST1P10620 155 aaKnown RBP7.15□□□□□ -1.26
CD44-227ENST00000528086 S100A4P26447 101 aaKnown RBP7.15□□□□□ -1.26
CD44-227ENST00000528086 RPL35P42766 123 aaKnown RBP7.15□□□□□ -1.26
CD44-227ENST00000528086 OR10AG1Q8NH19 301 aa7.15□□□□□ -1.26
CD44-227ENST00000528086 PCNPQ8WW12 178 aaKnown RBP7.15□□□□□ -1.26
CD44-227ENST00000528086 SFRP2Q96HF1 295 aa7.15□□□□□ -1.26
CD44-227ENST00000528086 LY96Q9Y6Y9 160 aa7.15□□□□□ -1.26
CD44-227ENST00000528086 IGHV3-38A0A0C4DH36 116 aa7.14□□□□□ -1.27
CD44-227ENST00000528086 MUC21A0A0G2JKD1 596 aa7.14□□□□□ -1.27
CD44-227ENST00000528086 MUC21A0A140T8X8 626 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms