RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 PRR9Q5T870 116 aa12.25□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 IGHV4-4A0A075B6R2 117 aa12.25□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 IGHV3OR16-10A0A075B7F0 116 aa12.25□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 A0A0G2JLM5 398 aa12.25□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 CRIP2P52943 208 aaPredicted RBP12.25□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 MOB4Q9Y3A3 225 aa12.25□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 TSSC4Q9Y5U2 329 aaPredicted RBP12.25□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 IGKV2D-26A0A0A0MRZ7 120 aa12.24□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 H3BUT2 72 aa12.24□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 RPL24P83731 157 aaKnown RBP12.24□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 OR4X2Q8NGF9 303 aa12.24□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 TRAV26-2A0A0B4J265 109 aa12.23□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 IGF1P05019 195 aa12.23□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 GPHB5Q86YW7 130 aa12.23□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 C16orf92Q96LL3 132 aa12.23□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 SPCS1Q9Y6A9 102 aa12.23□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPM0 123 aa12.23□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 FAM223BA6NKX1 122 aa12.23□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 FAM223AQ8IWN6 122 aa12.23□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 TRBV12-3P01733 135 aa12.22□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 PRSS1P07477 247 aa12.22□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 SHISA2Q6UWI4 295 aa12.22□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 UNQ9165/PRO28630Q6UXU0 137 aa12.22□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 MRPL16Q9NX20 251 aaKnown RBP12.22□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 CYSRT1A8MQ03 144 aa12.22□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 FOXC2Q99958 501 aa12.22□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.21□□□□□ -0.457e-8■■■■□ 22.1
MSH5-SAPCD1-208ENST00000498473 IGHV4-30-2A0A087WSY4 118 aa12.21□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 ARL3P36405 182 aa12.21□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 KIR3DS1Q14943 382 aa12.21□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 C9orf139Q6ZV77 190 aa12.21□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 UFC1Q9Y3C8 167 aa12.21□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 IGHV1-69DA0A0B4J2H0 117 aa12.21□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 IGHV1-69P01742 117 aa12.21□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 IGKCP01834 107 aa12.21□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 BRD3OSQ6XYD6 125 aa12.21□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 TTTY13Q9BZ97 58 aa12.21□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 H3BVH4 76 aa12.2□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 SOCS3O14543 225 aa12.2□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 ATP5LO75964 103 aa12.2□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 SPANXN1Q5VSR9 72 aa12.2□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 LENEPQ9Y5L5 61 aa12.2□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 MXRA5Q9NR99 2828 aa12.2□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 FABP2P12104 132 aa12.19□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 LAGE3Q14657 143 aa12.19□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 PSMG4Q5JS54 123 aa12.19□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 ZFAND2AQ8N6M9 145 aa12.19□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 FAM110AQ9BQ89 295 aa12.19□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 MAST4O15021 2626 aa12.19□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.18□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 DPM2O94777 84 aa12.18□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 DEFB1P60022 68 aa12.18□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 GTSCR1Q86UQ5 136 aa12.18□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 TEP1Q99973 2627 aaKnown RBP12.18□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 TRAV40A0A0B4J280 105 aa12.18□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 NDUFA4O00483 81 aa12.18□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 DEFB113Q30KQ7 82 aa12.18□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 ZNF418Q8TF45 676 aaPredicted RBP12.18□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 LINC00477Q96M19 166 aa12.18□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 NAA38Q9BRA0 125 aaKnown RBP12.18□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 HIGD1BQ9P298 99 aa12.18□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 J3KRW8 73 aa12.17□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 SPRY2O43597 315 aa12.17□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 WFDC11Q8NEX6 87 aa12.17□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 HIVEP1P15822 2718 aa12.17□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 CR1P17927 2039 aa12.17□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 MTORP42345 2549 aa12.17□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 IGHV4-61A0A0C4DH41 118 aa12.17□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 ZC2HC1BQ5TFG8 222 aa12.17□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 MRPL35Q9NZE8 188 aaKnown RBP12.17□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 MYOZ3Q8TDC0 251 aa12.16□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 FAM19A4Q96LR4 140 aa12.16□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 OVOL1O14753 267 aa12.15□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 IGHV4-38-2P0DP08 117 aa12.15□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 TM4SF20Q53R12 229 aa12.15□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 RAB37Q96AX2 223 aa12.15□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 TMEM160Q9NX00 188 aa12.15□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 F8W1H4 67 aa12.15□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 BRI3O95415 125 aa12.15□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 LY6EQ16553 131 aa12.15□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 SMIM2Q9BVW6 85 aa12.15□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 KLK15Q9H2R5 256 aa12.15□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 SPANXB1Q9NS25 103 aaPredicted RBP12.15□□□□□ -0.46
MSH5-SAPCD1-208ENST00000498473 TRBV25-1A0A075B6N4 114 aa12.14□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 A0A087WX48 190 aa12.14□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 TRAV21A0A0B4J279 112 aa12.14□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 RNF223E7ERA6 249 aa12.14□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 IGHV3-11P01762 117 aa12.14□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 IGHG2P01859 326 aa12.14□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 FXYD2P54710 66 aa12.14□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 OR10J6PQ8NGY7 276 aa12.14□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 Q96MF0 132 aa12.14□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 CHAC1Q9BUX1 264 aa12.14□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 HLA-DRB4P13762 266 aa12.14□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 KRTAP1-3Q8IUG1 177 aa12.14□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 RASL10AQ92737 203 aa12.14□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 HLA-DRB4X5D2U9 266 aa12.14□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 A6NDX4 124 aa12.13□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 F6UB75 175 aa12.13□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 ANXA2RQ3ZCQ2 193 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms