RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 HIF1ANQ9NWT6 349 aa8.92□□□□□ -0.98
HDAC4-210ENST00000493582 IGLV4-69A0A075B6H9 119 aa8.91□□□□□ -0.98
HDAC4-210ENST00000493582 ARL3P36405 182 aa8.91□□□□□ -0.98
HDAC4-210ENST00000493582 NDPQ00604 133 aa8.91□□□□□ -0.98
HDAC4-210ENST00000493582 BSPH1Q075Z2 132 aa8.91□□□□□ -0.98
HDAC4-210ENST00000493582 KAAG1Q9UBP8 84 aa8.91□□□□□ -0.98
HDAC4-210ENST00000493582 IGHV4-39P01824 125 aa8.91□□□□□ -0.98
HDAC4-210ENST00000493582 MGPP08493 103 aa8.91□□□□□ -0.98
HDAC4-210ENST00000493582 TMEM170BQ5T4T1 132 aa8.91□□□□□ -0.98
HDAC4-210ENST00000493582 BEX4Q9NWD9 120 aaPredicted RBP8.91□□□□□ -0.98
HDAC4-210ENST00000493582 SCGB2A1O75556 95 aa8.91□□□□□ -0.98
HDAC4-210ENST00000493582 TSHBP01222 138 aa8.91□□□□□ -0.98
HDAC4-210ENST00000493582 IGF1P05019 195 aa8.91□□□□□ -0.98
HDAC4-210ENST00000493582 MEIG1Q5JSS6 88 aa8.91□□□□□ -0.98
HDAC4-210ENST00000493582 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.91□□□□□ -0.98
HDAC4-210ENST00000493582 PIP4P1Q86T03 277 aa8.91□□□□□ -0.98
HDAC4-210ENST00000493582 IGHV4-4A0A075B6R2 117 aa8.9□□□□□ -0.98
HDAC4-210ENST00000493582 RNF223E7ERA6 249 aa8.9□□□□□ -0.98
HDAC4-210ENST00000493582 TIMD4Q96H15 378 aa8.9□□□□□ -0.98
HDAC4-210ENST00000493582 RNF5Q99942 180 aa8.9□□□□□ -0.98
HDAC4-210ENST00000493582 CENPVL3A0A0U1RRI6 287 aa8.89□□□□□ -0.99
HDAC4-210ENST00000493582 LY6LH3BQJ8 138 aa8.89□□□□□ -0.99
HDAC4-210ENST00000493582 BUB3O43684 328 aa8.89□□□□□ -0.99
HDAC4-210ENST00000493582 IGHV3-33P01772 117 aa8.89□□□□□ -0.99
HDAC4-210ENST00000493582 PRR9Q5T870 116 aa8.89□□□□□ -0.99
HDAC4-210ENST00000493582 TRAV8-4A0A0B4J246 113 aa8.89□□□□□ -0.99
HDAC4-210ENST00000493582 HERVK_113P61574 105 aa8.89□□□□□ -0.99
HDAC4-210ENST00000493582 RNASE6Q93091 150 aaKnown RBP8.89□□□□□ -0.99
HDAC4-210ENST00000493582 LRBAP50851 2863 aa8.89□□□□□ -0.99
HDAC4-210ENST00000493582 RBAKDNA6NC62 111 aa8.89□□□□□ -0.99
HDAC4-210ENST00000493582 TCF15Q12870 199 aa8.89□□□□□ -0.99
HDAC4-210ENST00000493582 DYNLRB1Q9NP97 96 aa8.89□□□□□ -0.99
HDAC4-210ENST00000493582 MED13LQ71F56 2210 aa8.88□□□□□ -0.99
HDAC4-210ENST00000493582 RPL39P62891 51 aaKnown RBP8.88□□□□□ -0.99
HDAC4-210ENST00000493582 Q1RN00 199 aa8.88□□□□□ -0.99
HDAC4-210ENST00000493582 DCHS2Q6V1P9 2916 aa8.88□□□□□ -0.99
HDAC4-210ENST00000493582 TRAV2A0A0B4J234 112 aa8.88□□□□□ -0.99
HDAC4-210ENST00000493582 ZNRF2Q8NHG8 242 aa8.88□□□□□ -0.99
HDAC4-210ENST00000493582 FAM57AQ8TBR7 257 aa8.88□□□□□ -0.99
HDAC4-210ENST00000493582 CHCHD5Q9BSY4 110 aa8.88□□□□□ -0.99
HDAC4-210ENST00000493582 TP53TG1Q9Y2A0 90 aa8.88□□□□□ -0.99
HDAC4-210ENST00000493582 CLEC3BP05452 202 aa8.87□□□□□ -0.99
HDAC4-210ENST00000493582 LINC01620Q4KN68 170 aa8.87□□□□□ -0.99
HDAC4-210ENST00000493582 Q6Q795 121 aa8.87□□□□□ -0.99
HDAC4-210ENST00000493582 AMELXQ99217 191 aa8.87□□□□□ -0.99
HDAC4-210ENST00000493582 TNFRSF18Q9Y5U5 241 aa8.87□□□□□ -0.99
HDAC4-210ENST00000493582 SPTBN2O15020 2390 aa8.87□□□□□ -0.99
HDAC4-210ENST00000493582 S100A4P26447 101 aaKnown RBP8.87□□□□□ -0.99
HDAC4-210ENST00000493582 TMEM263Q8WUH6 116 aaKnown RBP8.87□□□□□ -0.99
HDAC4-210ENST00000493582 PRO3102Q9H379 93 aa8.87□□□□□ -0.99
HDAC4-210ENST00000493582 IGHV3-64A0A075B6Q5 118 aa8.87□□□□□ -0.99
HDAC4-210ENST00000493582 J3QQQ9 107 aa8.87□□□□□ -0.99
HDAC4-210ENST00000493582 IGFL2Q6UWQ7 119 aa8.87□□□□□ -0.99
HDAC4-210ENST00000493582 DPH3P1Q9H4G8 78 aa8.87□□□□□ -0.99
HDAC4-210ENST00000493582 GVINP1Q7Z2Y8 2422 aa8.86□□□□□ -0.99
HDAC4-210ENST00000493582 MUSTN1Q8IVN3 82 aa8.86□□□□□ -0.99
HDAC4-210ENST00000493582 OR10J6PQ8NGY7 276 aa8.86□□□□□ -0.99
HDAC4-210ENST00000493582 PMVKQ15126 192 aa8.86□□□□□ -0.99
HDAC4-210ENST00000493582 NPBQ8NG41 125 aa8.86□□□□□ -0.99
HDAC4-210ENST00000493582 PHLDA3Q9Y5J5 127 aa8.86□□□□□ -0.99
HDAC4-210ENST00000493582 IGIPA6NJ69 53 aa8.85□□□□□ -0.99
HDAC4-210ENST00000493582 LGALS3P17931 250 aaKnown RBP8.85□□□□□ -0.99
HDAC4-210ENST00000493582 GPHB5Q86YW7 130 aa8.85□□□□□ -0.99
HDAC4-210ENST00000493582 PPDPFQ9H3Y8 114 aa8.85□□□□□ -0.99
HDAC4-210ENST00000493582 DPM3Q9P2X0 92 aa8.85□□□□□ -0.99
HDAC4-210ENST00000493582 M0QXV9 152 aa8.85□□□□□ -0.99
HDAC4-210ENST00000493582 DEFB1P60022 68 aa8.85□□□□□ -0.99
HDAC4-210ENST00000493582 FOXC1Q12948 553 aa8.85□□□□□ -0.99
HDAC4-210ENST00000493582 ATXN8Q156A1 80 aa8.85□□□□□ -0.99
HDAC4-210ENST00000493582 DEFB109BQ30KR1 87 aa8.85□□□□□ -0.99
HDAC4-210ENST00000493582 APC2O95996 2303 aa8.85□□□□□ -0.99
HDAC4-210ENST00000493582 EP300Q09472 2414 aaPredicted RBP8.85□□□□□ -0.99
HDAC4-210ENST00000493582 C15orf32Q32M92 178 aa8.85□□□□□ -0.99
HDAC4-210ENST00000493582 ZFAND3Q9H8U3 227 aa8.85□□□□□ -0.99
HDAC4-210ENST00000493582 ZNF56Q15929 161 aa8.84□□□□□ -0.99
HDAC4-210ENST00000493582 PAPPA-AS1Q5QFB9 102 aa8.84□□□□□ -0.99
HDAC4-210ENST00000493582 ASH1LQ9NR48 2969 aaKnown RBP8.84□□□□□ -0.99
HDAC4-210ENST00000493582 CLPSL1A2RUU4 121 aa8.84□□□□□ -0.99
HDAC4-210ENST00000493582 H3BMM0 161 aa8.84□□□□□ -0.99
HDAC4-210ENST00000493582 LGALS9O00182 355 aa8.84□□□□□ -0.99
HDAC4-210ENST00000493582 ZNF883P0CG24 379 aa8.84□□□□□ -0.99
HDAC4-210ENST00000493582 UBE2WQ96B02 151 aa8.84□□□□□ -0.99
HDAC4-210ENST00000493582 DUX3Q96PT4 197 aa8.84□□□□□ -0.99
HDAC4-210ENST00000493582 OPRPNQ99935 248 aaPredicted RBP8.84□□□□□ -0.99
HDAC4-210ENST00000493582 GNRH2O43555 120 aa8.83□□□□□ -1
HDAC4-210ENST00000493582 P0DMU3 169 aa8.83□□□□□ -1
HDAC4-210ENST00000493582 FAM231AP0DMU4 169 aa8.83□□□□□ -1
HDAC4-210ENST00000493582 FAM231CP0DMU5 169 aa8.83□□□□□ -1
HDAC4-210ENST00000493582 C9orf47Q6ZRZ4 202 aa8.83□□□□□ -1
HDAC4-210ENST00000493582 TRBV10-2A0A0K0K1G8 114 aa8.83□□□□□ -1
HDAC4-210ENST00000493582 RPL13AP40429 203 aaKnown RBP8.83□□□□□ -1
HDAC4-210ENST00000493582 PRR30Q53SZ7 412 aaPredicted RBP8.83□□□□□ -1
HDAC4-210ENST00000493582 C2orf82Q6UX34 121 aa8.83□□□□□ -1
HDAC4-210ENST00000493582 MDFICQ9P1T7 246 aa8.83□□□□□ -1
HDAC4-210ENST00000493582 CDX4O14627 284 aaPredicted RBP8.83□□□□□ -1
HDAC4-210ENST00000493582 TRIAP1O43715 76 aa8.83□□□□□ -1
HDAC4-210ENST00000493582 VPREB3Q9UKI3 123 aa8.83□□□□□ -1
HDAC4-210ENST00000493582 ID1P41134 155 aa8.82□□□□□ -1
HDAC4-210ENST00000493582 CLEC19AQ6UXS0 136 aa8.82□□□□□ -1
HDAC4-210ENST00000493582 E7EQL1 145 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms