RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 PGPA6NDG6 321 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 CDC34P49427 236 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 TTC32Q5I0X7 151 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 MUC21Q5SSG8 566 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 Q6AWC8 147 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 Q6ZQT7 251 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 C6orf223Q8N319 242 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 HSD17B11Q8NBQ5 300 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 OR2G3Q8NGZ4 309 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 ASB13Q8WXK3 278 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 ST6GAL2Q96JF0 529 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 AQP10Q96PS8 301 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 UPK3BQ9BT76 320 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 Q9H8V8 135 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 MRPL16Q9NX20 251 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 RPH3ALQ9UNE2 315 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 MRPS16Q9Y3D3 137 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 DNAH2Q9P225 4427 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 KIAA1109Q2LD37 5005 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 HERC2O95714 4834 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 PCLOQ9Y6V0 5065 aa4.7□□□□□ -1.66
CCDC88A-213ENST00000476903 A0A096LPF7 62 aa4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 HMGB3O15347 200 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 EIF3GO75821 320 aaKnown RBP eCLIP4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 IGHV3-53P01767 116 aa4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 GIPP09681 153 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 ARL14EPLP0DKL9 152 aa4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 SERF2P84101 59 aa4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 ESRGQ1W209 222 aa4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 LBHQ53QV2 105 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 FAM159AQ6UWV7 190 aa4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 GOLT1AQ6ZVE7 132 aa4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 SMIM15Q7Z3B0 74 aa4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 INO80EQ8NBZ0 244 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 OR4C5Q8NGB2 326 aa4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 VSIG2Q96IQ7 327 aa4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 PSMG3Q9BT73 122 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 PRO0255Q9UI72 69 aa4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 NAGKQ9UJ70 344 aa4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 ICOSQ9Y6W8 199 aa4.69□□□□□ -1.66
CCDC88A-213ENST00000476903 BORCS7-ASMTA0A0B4J1R7 106 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 TRAV21A0A0B4J279 112 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 TRGV4A0A0C4DH28 118 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 A0A1W2PPQ1 181 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 CXorf1O96002 111 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 ATP6V0CP27449 155 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 GCHFRP30047 84 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 GNG5P63218 68 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 TMEM183BQ1AE95 376 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 TDRG1Q3Y452 100 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 TMEM183AQ8IXX5 376 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 LINC00518Q8N0U6 118 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 RASL10AQ92737 203 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 NDFIP1Q9BT67 221 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 MDFICQ9P1T7 246 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 HHLA3Q9XRX5 114 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 DNAH17Q9UFH2 4485 aa4.68□□□□□ -1.66
CCDC88A-213ENST00000476903 FXYD6-FXYD2A0A087WZ82 144 aa4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 TRAV8-1A0A0A6YYK1 113 aa4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 F6UZH7 168 aa4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 M0R2P5 195 aa4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 CRYBA4P53673 196 aa4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 MRPL23Q16540 153 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 Q5BKY6 102 aa4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 C5orf17Q8NAS9 161 aa4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 KCNS1Q96KK3 526 aa4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 ALKBH7Q9BT30 221 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 ACTR3CQ9C0K3 210 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 SH3BGRL3Q9H299 93 aa4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 SDF2L1Q9HCN8 221 aa4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 TMEM167BQ9NRX6 74 aa4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 TNFSF18Q9UNG2 199 aa4.67□□□□□ -1.66
CCDC88A-213ENST00000476903 PKD1P98161 4303 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 TRAV4A0A0B4J268 109 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 IGHV3-16A0A0C4DH30 117 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 RNF222A6NCQ9 220 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 C16orf90A8MZG2 172 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 F5H697 171 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 SIVA1O15304 175 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 GNRH2O43555 120 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 ORM1P02763 201 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 TCRAP04437 139 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 TYMSP04818 313 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 SFTA3P0C7M3 94 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 ZFP69Q49AA0 526 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 RPL7L1Q6DKI1 246 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 NEGR1Q7Z3B1 354 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 OR2T35Q8NGX2 323 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 PCNPQ8WW12 178 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 TVP23CQ96ET8 276 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 SGK494Q96LW2 274 aa4.66□□□□□ -1.66
CCDC88A-213ENST00000476903 A0A1W2PRE2 83 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 FBLL1A6NHQ2 334 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 GGTLC3B5MD39 225 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 C9JCJ5 164 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 K7EQD1 137 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 TAAR5O14804 337 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 NXPH4O95158 308 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 PFN1P07737 140 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 SRIP30626 198 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms