RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CBY3A6NI87 242 aa8.75□□□□□ -1.01
PTPRF-208ENST00000437607 ZNF324O75467 553 aaPredicted RBP8.75□□□□□ -1.01
PTPRF-208ENST00000437607 TCL1AP56279 114 aa8.75□□□□□ -1.01
PTPRF-208ENST00000437607 Q6ZQT7 251 aa8.75□□□□□ -1.01
PTPRF-208ENST00000437607 TPPP3Q9BW30 176 aa8.75□□□□□ -1.01
PTPRF-208ENST00000437607 TMEM242Q9NWH2 141 aa8.75□□□□□ -1.01
PTPRF-208ENST00000437607 IL36BQ9NZH7 164 aa8.75□□□□□ -1.01
PTPRF-208ENST00000437607 C11orf21Q9P2W6 132 aa8.75□□□□□ -1.01
PTPRF-208ENST00000437607 GRIFINA4D1Z8 144 aa8.74□□□□□ -1.01
PTPRF-208ENST00000437607 TYMSP04818 313 aa8.74□□□□□ -1.01
PTPRF-208ENST00000437607 GIG44P09565 113 aaPredicted RBP8.74□□□□□ -1.01
PTPRF-208ENST00000437607 HTN1P15515 57 aa8.74□□□□□ -1.01
PTPRF-208ENST00000437607 TDRG1Q3Y452 100 aa8.74□□□□□ -1.01
PTPRF-208ENST00000437607 CBLN2Q8IUK8 224 aa8.74□□□□□ -1.01
PTPRF-208ENST00000437607 FER1L6-AS1Q8NA97 138 aa8.74□□□□□ -1.01
PTPRF-208ENST00000437607 BORCS7Q96B45 105 aa8.74□□□□□ -1.01
PTPRF-208ENST00000437607 NEU1Q99519 415 aa8.74□□□□□ -1.01
PTPRF-208ENST00000437607 GFRA4Q9GZZ7 299 aa8.74□□□□□ -1.01
PTPRF-208ENST00000437607 SMCO4Q9NRQ5 59 aa8.74□□□□□ -1.01
PTPRF-208ENST00000437607 A0A1W2PPQ1 181 aa8.73□□□□□ -1.01
PTPRF-208ENST00000437607 HIGD1CA8MV81 97 aa8.73□□□□□ -1.01
PTPRF-208ENST00000437607 H3BVH4 76 aa8.73□□□□□ -1.01
PTPRF-208ENST00000437607 SCO1O75880 301 aa8.73□□□□□ -1.01
PTPRF-208ENST00000437607 GZMBP10144 247 aa8.73□□□□□ -1.01
PTPRF-208ENST00000437607 NANOS2P60321 138 aaKnown RBP8.73□□□□□ -1.01
PTPRF-208ENST00000437607 ZNF415Q09FC8 603 aa8.73□□□□□ -1.01
PTPRF-208ENST00000437607 TMEM88Q6PEY1 159 aa8.73□□□□□ -1.01
PTPRF-208ENST00000437607 C1orf158Q8N1D5 194 aa8.73□□□□□ -1.01
PTPRF-208ENST00000437607 IMMP2LQ96T52 175 aa8.73□□□□□ -1.01
PTPRF-208ENST00000437607 LINC00467Q9BRT7 94 aa8.73□□□□□ -1.01
PTPRF-208ENST00000437607 NAT8BQ9UHF3 227 aa8.73□□□□□ -1.01
PTPRF-208ENST00000437607 TIMM8BQ9Y5J9 83 aaPredicted RBP8.73□□□□□ -1.01
PTPRF-208ENST00000437607 URGCP-MRPS24S4R325 110 aa8.73□□□□□ -1.01
PTPRF-208ENST00000437607 MUC4Q99102 2169 aa8.73□□□□□ -1.01
PTPRF-208ENST00000437607 SMIM27A0A1W2PRY6 76 aa8.72□□□□□ -1.01
PTPRF-208ENST00000437607 FAM231BA6NCW3 169 aa8.72□□□□□ -1.01
PTPRF-208ENST00000437607 MED14OSP0DP75 135 aa8.72□□□□□ -1.01
PTPRF-208ENST00000437607 TRAV9-1A0A075B6T8 112 aa8.71□□□□□ -1.02
PTPRF-208ENST00000437607 CTRLP40313 264 aa8.71□□□□□ -1.02
PTPRF-208ENST00000437607 RRN3P1Q2M238 152 aa8.71□□□□□ -1.02
PTPRF-208ENST00000437607 ZNF705AQ6ZN79 300 aaPredicted RBP8.71□□□□□ -1.02
PTPRF-208ENST00000437607 CSNK1G2-AS1Q8NCQ2 148 aa8.71□□□□□ -1.02
PTPRF-208ENST00000437607 TMEM263Q8WUH6 116 aaKnown RBP8.71□□□□□ -1.02
PTPRF-208ENST00000437607 C16orf74Q96GX8 76 aa8.71□□□□□ -1.02
PTPRF-208ENST00000437607 BTF3L4Q96K17 158 aa8.71□□□□□ -1.02
PTPRF-208ENST00000437607 PGLYRP4Q96LB8 373 aa8.71□□□□□ -1.02
PTPRF-208ENST00000437607 IGHV3-16A0A0C4DH30 117 aa8.7□□□□□ -1.02
PTPRF-208ENST00000437607 IGLC6P0CF74 106 aa8.7□□□□□ -1.02
PTPRF-208ENST00000437607 OR11H2Q8NH07 326 aa8.7□□□□□ -1.02
PTPRF-208ENST00000437607 C11orf45Q8TAV5 145 aa8.7□□□□□ -1.02
PTPRF-208ENST00000437607 GTSF1Q8WW33 167 aa8.7□□□□□ -1.02
PTPRF-208ENST00000437607 C11orf68Q9H3H3 251 aaKnown RBP8.7□□□□□ -1.02
PTPRF-208ENST00000437607 TP53TG3Q9ULZ0 132 aa8.7□□□□□ -1.02
PTPRF-208ENST00000437607 SNURFLB1AK76 121 aa8.69□□□□□ -1.02
PTPRF-208ENST00000437607 F2Z2F3 143 aa8.69□□□□□ -1.02
PTPRF-208ENST00000437607 DEFB4AO15263 64 aa8.69□□□□□ -1.02
PTPRF-208ENST00000437607 GNRH2O43555 120 aa8.69□□□□□ -1.02
PTPRF-208ENST00000437607 SNAI2O43623 268 aa8.69□□□□□ -1.02
PTPRF-208ENST00000437607 OR5AL1P0C617 328 aa8.69□□□□□ -1.02
PTPRF-208ENST00000437607 ARMS2P0C7Q2 107 aa8.69□□□□□ -1.02
PTPRF-208ENST00000437607 FAM3BP58499 235 aaPredicted RBP8.69□□□□□ -1.02
PTPRF-208ENST00000437607 DNLZQ5SXM8 178 aa8.69□□□□□ -1.02
PTPRF-208ENST00000437607 SPANXN1Q5VSR9 72 aa8.69□□□□□ -1.02
PTPRF-208ENST00000437607 LYZL1Q6UWQ5 148 aa8.69□□□□□ -1.02
PTPRF-208ENST00000437607 ZFP82Q8N141 532 aa8.69□□□□□ -1.02
PTPRF-208ENST00000437607 NUP35Q8NFH5 326 aa8.69□□□□□ -1.02
PTPRF-208ENST00000437607 PHLDA3Q9Y5J5 127 aa8.69□□□□□ -1.02
PTPRF-208ENST00000437607 A0A1B0GUT8 65 aa8.68□□□□□ -1.02
PTPRF-208ENST00000437607 SMIM9A6NGZ8 99 aa8.68□□□□□ -1.02
PTPRF-208ENST00000437607 RNASE3P12724 160 aaKnown RBP8.68□□□□□ -1.02
PTPRF-208ENST00000437607 CACNG7P62955 275 aa8.68□□□□□ -1.02
PTPRF-208ENST00000437607 RIGQ13278 110 aa8.68□□□□□ -1.02
PTPRF-208ENST00000437607 MRPL54Q6P161 138 aaKnown RBP8.68□□□□□ -1.02
PTPRF-208ENST00000437607 ZNF493Q6ZR52 646 aa8.68□□□□□ -1.02
PTPRF-208ENST00000437607 ATP5L2Q7Z4Y8 100 aa8.68□□□□□ -1.02
PTPRF-208ENST00000437607 SYT8Q8NBV8 401 aa8.68□□□□□ -1.02
PTPRF-208ENST00000437607 RNASE8Q8TDE3 154 aaKnown RBP8.68□□□□□ -1.02
PTPRF-208ENST00000437607 C9orf85Q96MD7 179 aa8.68□□□□□ -1.02
PTPRF-208ENST00000437607 APLNQ9ULZ1 77 aa8.68□□□□□ -1.02
PTPRF-208ENST00000437607 ABCA13Q86UQ4 5058 aa8.67□□□□□ -1.02
PTPRF-208ENST00000437607 M0R381 172 aa8.67□□□□□ -1.02
PTPRF-208ENST00000437607 SPINK4O60575 86 aa8.67□□□□□ -1.02
PTPRF-208ENST00000437607 S100A8P05109 93 aa8.67□□□□□ -1.02
PTPRF-208ENST00000437607 MIFP14174 115 aa8.67□□□□□ -1.02
PTPRF-208ENST00000437607 FOXA3P55318 350 aaPredicted RBP8.67□□□□□ -1.02
PTPRF-208ENST00000437607 HBBP68871 147 aa8.67□□□□□ -1.02
PTPRF-208ENST00000437607 ELOBQ15370 118 aa8.67□□□□□ -1.02
PTPRF-208ENST00000437607 C11orf72Q8NBR9 251 aa8.67□□□□□ -1.02
PTPRF-208ENST00000437607 OR10AG1Q8NH19 301 aa8.67□□□□□ -1.02
PTPRF-208ENST00000437607 SPXQ9BT56 116 aa8.67□□□□□ -1.02
PTPRF-208ENST00000437607 GSN-AS1Q9NRJ2 163 aa8.67□□□□□ -1.02
PTPRF-208ENST00000437607 MDFICQ9P1T7 246 aa8.67□□□□□ -1.02
PTPRF-208ENST00000437607 X6R8D5 127 aa8.67□□□□□ -1.02
PTPRF-208ENST00000437607 HSPG2P98160 4391 aa8.66□□□□□ -1.02
PTPRF-208ENST00000437607 TGIF2-C20orf24A0A0A6YYL0 155 aa8.66□□□□□ -1.02
PTPRF-208ENST00000437607 MUC21A0A0G2JKD1 596 aa8.66□□□□□ -1.02
PTPRF-208ENST00000437607 MUC21A0A140T8X8 626 aa8.66□□□□□ -1.02
PTPRF-208ENST00000437607 A0A1B0GW15 77 aa8.66□□□□□ -1.02
PTPRF-208ENST00000437607 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.66□□□□□ -1.02
PTPRF-208ENST00000437607 Q8NAQ8 132 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms