RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 UFC1Q9Y3C8 167 aa7.21□□□□□ -1.25
CUX1-206ENST00000437600 C7orf71A4D174 169 aa7.21□□□□□ -1.26
CUX1-206ENST00000437600 G3V4G9 280 aa7.21□□□□□ -1.26
CUX1-206ENST00000437600 CD5LO43866 347 aa7.21□□□□□ -1.26
CUX1-206ENST00000437600 ORMDL3Q8N138 153 aa7.21□□□□□ -1.26
CUX1-206ENST00000437600 NAA38Q9BRA0 125 aaKnown RBP7.21□□□□□ -1.26
CUX1-206ENST00000437600 CYSRT1A8MQ03 144 aa7.2□□□□□ -1.26
CUX1-206ENST00000437600 SCGB2A1O75556 95 aa7.2□□□□□ -1.26
CUX1-206ENST00000437600 IGKV3-20P01619 116 aa7.2□□□□□ -1.26
CUX1-206ENST00000437600 TMEM78Q5T7P6 136 aa7.2□□□□□ -1.26
CUX1-206ENST00000437600 TRBV6-1A0A0K0K1D8 114 aa7.2□□□□□ -1.26
CUX1-206ENST00000437600 OR4X2Q8NGF9 303 aa7.2□□□□□ -1.26
CUX1-206ENST00000437600 TRBV7-1A0A0A6YYK4 115 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 TENM1Q9UKZ4 2725 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 H3BVH4 76 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 M0R381 172 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 TSPAN13O95857 204 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 CACNG7P62955 275 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 GPHB5Q86YW7 130 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 RNF185Q96GF1 192 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 AP1S3Q96PC3 154 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 TTTY13Q9BZ97 58 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 TMEM191AQ9H0A3 160 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 GTSF1LQ9H1H1 148 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 IGHG2P01859 326 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 IGLC6P0CF74 106 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 HIST1H1AQ02539 215 aaPredicted RBP7.19□□□□□ -1.26
CUX1-206ENST00000437600 ZNF493Q6ZR52 646 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 VCX2Q9H322 139 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 SCRT2Q9NQ03 307 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 DKK2Q9UBU2 259 aa7.19□□□□□ -1.26
CUX1-206ENST00000437600 ATRQ13535 2644 aa7.18□□□□□ -1.26
CUX1-206ENST00000437600 CRXO43186 299 aaPredicted RBP7.18□□□□□ -1.26
CUX1-206ENST00000437600 GNRH2O43555 120 aa7.18□□□□□ -1.26
CUX1-206ENST00000437600 NACAE9PAV3 2078 aa7.18□□□□□ -1.26
CUX1-206ENST00000437600 HOXA3O43365 443 aaPredicted RBP7.18□□□□□ -1.26
CUX1-206ENST00000437600 RNASE4P34096 147 aaKnown RBP7.18□□□□□ -1.26
CUX1-206ENST00000437600 HSPB8Q9UJY1 196 aa7.18□□□□□ -1.26
CUX1-206ENST00000437600 SPANXN1Q5VSR9 72 aa7.17□□□□□ -1.26
CUX1-206ENST00000437600 GTF2H5Q6ZYL4 71 aa7.17□□□□□ -1.26
CUX1-206ENST00000437600 RHPN1-AS1Q9BWJ2 59 aa7.17□□□□□ -1.26
CUX1-206ENST00000437600 GEMIN7Q9H840 131 aaKnown RBP7.17□□□□□ -1.26
CUX1-206ENST00000437600 H3BUT2 72 aa7.17□□□□□ -1.26
CUX1-206ENST00000437600 TNFRSF6BO95407 300 aa7.17□□□□□ -1.26
CUX1-206ENST00000437600 LEPP41159 167 aa7.17□□□□□ -1.26
CUX1-206ENST00000437600 C19orf54Q5BKX5 351 aa7.17□□□□□ -1.26
CUX1-206ENST00000437600 FOXC2Q99958 501 aa7.17□□□□□ -1.26
CUX1-206ENST00000437600 GATA3P23771 443 aa7.17□□□□□ -1.26
CUX1-206ENST00000437600 KRTAP1-1Q07627 177 aa7.17□□□□□ -1.26
CUX1-206ENST00000437600 Q6AWC8 147 aa7.17□□□□□ -1.26
CUX1-206ENST00000437600 JMJD8Q96S16 334 aa7.17□□□□□ -1.26
CUX1-206ENST00000437600 SIGMAR1Q99720 223 aa7.16□□□□□ -1.26
CUX1-206ENST00000437600 UFSP1Q6NVU6 142 aa7.16□□□□□ -1.26
CUX1-206ENST00000437600 SMIM20Q8N5G0 67 aa7.16□□□□□ -1.26
CUX1-206ENST00000437600 RAB37Q96AX2 223 aa7.16□□□□□ -1.26
CUX1-206ENST00000437600 SLC50A1Q9BRV3 221 aa7.16□□□□□ -1.26
CUX1-206ENST00000437600 NPFFR1Q9GZQ6 430 aa7.16□□□□□ -1.26
CUX1-206ENST00000437600 U3KQE9 123 aa7.16□□□□□ -1.26
CUX1-206ENST00000437600 IGHV7-4-1A0A0J9YVY3 117 aa7.15□□□□□ -1.26
CUX1-206ENST00000437600 K7EMI3 77 aa7.15□□□□□ -1.26
CUX1-206ENST00000437600 PRSS1P07477 247 aa7.15□□□□□ -1.26
CUX1-206ENST00000437600 NMUP48645 174 aa7.15□□□□□ -1.26
CUX1-206ENST00000437600 TMEM97Q5BJF2 176 aa7.15□□□□□ -1.26
CUX1-206ENST00000437600 PET117Q6UWS5 81 aa7.15□□□□□ -1.26
CUX1-206ENST00000437600 C2orf91Q6ZV80 131 aa7.15□□□□□ -1.26
CUX1-206ENST00000437600 C14orf178Q8N769 122 aaPredicted RBP7.15□□□□□ -1.26
CUX1-206ENST00000437600 JPT2Q9H910 190 aa7.15□□□□□ -1.26
CUX1-206ENST00000437600 S100A4P26447 101 aaKnown RBP7.15□□□□□ -1.27
CUX1-206ENST00000437600 SRSF2Q01130 221 aaKnown RBP7.15□□□□□ -1.27
CUX1-206ENST00000437600 LINC01545Q5VT33 79 aa7.15□□□□□ -1.27
CUX1-206ENST00000437600 PCP2Q8IVA1 136 aa7.15□□□□□ -1.27
CUX1-206ENST00000437600 VWFP04275 2813 aa7.15□□□□□ -1.27
CUX1-206ENST00000437600 TRAV12-2A0A075B6T6 113 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 OR11H12B2RN74 326 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 TCTEX1D4Q5JR98 221 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 NEGR1Q7Z3B1 354 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 OR11H1Q8NG94 326 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 OR11H2Q8NH07 326 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 IFI27L1Q96BM0 104 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 DUX3Q96PT4 197 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 CITED2Q99967 270 aaPredicted RBP7.14□□□□□ -1.27
CUX1-206ENST00000437600 U3KQK5 164 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 FAM223BA6NKX1 122 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 M0QXV9 152 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 HBDP02042 147 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 HTN1P15515 57 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 ANXA2RQ3ZCQ2 193 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 LINC01559Q495D7 138 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 FAM223AQ8IWN6 122 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 TMEM158Q8WZ71 300 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 MUC4Q99102 2169 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 C9orf118A6NHY6 69 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 K7EP34 96 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 PRM2P04554 102 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 RPL32P62910 135 aaKnown RBP7.14□□□□□ -1.27
CUX1-206ENST00000437600 SEC11AP67812 179 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 RPL24P83731 157 aaKnown RBP7.14□□□□□ -1.27
CUX1-206ENST00000437600 COX8CQ7Z4L0 72 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 C11orf44Q8N8P7 122 aa7.14□□□□□ -1.27
CUX1-206ENST00000437600 OR2K2Q8NGT1 345 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms