RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 DNAH2Q9P225 4427 aa4.94□□□□□ -1.62
LIMA1-202ENST00000394943 TRAV9-1A0A075B6T8 112 aa4.94□□□□□ -1.62
LIMA1-202ENST00000394943 A0A1W2PPQ1 181 aa4.94□□□□□ -1.62
LIMA1-202ENST00000394943 FAM3BP58499 235 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-202ENST00000394943 LINC01587Q99440 93 aa4.94□□□□□ -1.62
LIMA1-202ENST00000394943 RPP21Q9H633 154 aaKnown RBP4.94□□□□□ -1.62
LIMA1-202ENST00000394943 FAM159AQ6UWV7 190 aa4.93□□□□□ -1.62
LIMA1-202ENST00000394943 YPEL4Q96NS1 127 aa4.93□□□□□ -1.62
LIMA1-202ENST00000394943 MDFICQ9P1T7 246 aa4.93□□□□□ -1.62
LIMA1-202ENST00000394943 TRAV10A0A0B4J240 114 aa4.93□□□□□ -1.62
LIMA1-202ENST00000394943 NUPR2A6NF83 97 aa4.93□□□□□ -1.62
LIMA1-202ENST00000394943 SFTA3P0C7M3 94 aa4.93□□□□□ -1.62
LIMA1-202ENST00000394943 NDUFA5Q16718 116 aa4.93□□□□□ -1.62
LIMA1-202ENST00000394943 CEMP1Q6PRD7 247 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-202ENST00000394943 TSKUQ8WUA8 353 aa4.93□□□□□ -1.62
LIMA1-202ENST00000394943 GSN-AS1Q9NRJ2 163 aa4.93□□□□□ -1.62
LIMA1-202ENST00000394943 A0A1B0GXF2 115 aa4.93□□□□□ -1.62
LIMA1-202ENST00000394943 PPP1R2P9O14990 202 aa4.93□□□□□ -1.62
LIMA1-202ENST00000394943 BTF3P20290 206 aaKnown RBP4.93□□□□□ -1.62
LIMA1-202ENST00000394943 ANAPC16Q96DE5 110 aa4.93□□□□□ -1.62
LIMA1-202ENST00000394943 EIF5A2Q9GZV4 153 aaKnown RBP4.93□□□□□ -1.62
LIMA1-202ENST00000394943 APLNQ9ULZ1 77 aa4.93□□□□□ -1.62
LIMA1-202ENST00000394943 RYR2Q92736 4967 aa4.93□□□□□ -1.62
LIMA1-202ENST00000394943 MUC4Q99102 2169 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 IGKV3-20P01619 116 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 GATA1P15976 413 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-202ENST00000394943 ASIPP42127 132 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 FHL2Q14192 279 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 MUC7Q8TAX7 377 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 GTSF1Q8WW33 167 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 A0A1B0GW15 77 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 CXorf65A6NEN9 183 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 GNRH2O43555 120 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 SLAQ13239 276 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 FAM222AQ5U5X8 452 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 CFAP126Q5VTH2 177 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 RASL11AQ6T310 242 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 SMIM7Q9BQ49 75 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 UPK3BQ9BT76 320 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 CTDSP1Q9GZU7 261 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 TRBV6-4A0A1B0GX49 114 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 PRSS47A8MTI9 375 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 A8MWV9 139 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 CRYGDP07320 174 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 COMMD7Q86VX2 200 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 C11orf45Q8TAV5 145 aa4.92□□□□□ -1.62
LIMA1-202ENST00000394943 ZNF727A8MUV8 499 aa4.91□□□□□ -1.62
LIMA1-202ENST00000394943 ZFP82Q8N141 532 aa4.91□□□□□ -1.62
LIMA1-202ENST00000394943 TENM3Q9P273 2699 aa4.91□□□□□ -1.62
LIMA1-202ENST00000394943 SOHLH1Q5JUK2 328 aa4.91□□□□□ -1.62
LIMA1-202ENST00000394943 ATP5L2Q7Z4Y8 100 aa4.91□□□□□ -1.62
LIMA1-202ENST00000394943 C15orf53Q8NAA6 179 aa4.91□□□□□ -1.62
LIMA1-202ENST00000394943 XKRY2A2RUG3 117 aa4.91□□□□□ -1.62
LIMA1-202ENST00000394943 HOXA5P20719 270 aa4.91□□□□□ -1.62
LIMA1-202ENST00000394943 RAB4BP61018 213 aa4.91□□□□□ -1.62
LIMA1-202ENST00000394943 RPL32P62910 135 aaKnown RBP4.91□□□□□ -1.62
LIMA1-202ENST00000394943 CASC10Q5T4H9 136 aa4.91□□□□□ -1.62
LIMA1-202ENST00000394943 A0A1B0GV50 99 aa4.9□□□□□ -1.62
LIMA1-202ENST00000394943 RHODO00212 210 aa4.9□□□□□ -1.62
LIMA1-202ENST00000394943 RHEBQ15382 184 aa4.9□□□□□ -1.62
LIMA1-202ENST00000394943 RPH3ALQ9UNE2 315 aa4.9□□□□□ -1.62
LIMA1-202ENST00000394943 A8MWL6 223 aa4.9□□□□□ -1.63
LIMA1-202ENST00000394943 SNURFLB1AK76 121 aa4.9□□□□□ -1.63
LIMA1-202ENST00000394943 P01737 135 aa4.9□□□□□ -1.63
LIMA1-202ENST00000394943 AKR1D1P51857 326 aa4.9□□□□□ -1.63
LIMA1-202ENST00000394943 CRYBA4P53673 196 aa4.9□□□□□ -1.63
LIMA1-202ENST00000394943 OR5I1Q13606 314 aa4.9□□□□□ -1.63
LIMA1-202ENST00000394943 SGK494Q96LW2 274 aa4.9□□□□□ -1.63
LIMA1-202ENST00000394943 IGHV3-53P01767 116 aa4.9□□□□□ -1.63
LIMA1-202ENST00000394943 ARMS2P0C7Q2 107 aa4.9□□□□□ -1.63
LIMA1-202ENST00000394943 Q6ZTI0 123 aa4.9□□□□□ -1.63
LIMA1-202ENST00000394943 VSIG2Q96IQ7 327 aa4.9□□□□□ -1.63
LIMA1-202ENST00000394943 DNAH10Q8IVF4 4471 aa4.89□□□□□ -1.63
LIMA1-202ENST00000394943 TRBV10-1A0A0K0K1A3 114 aa4.89□□□□□ -1.63
LIMA1-202ENST00000394943 ATP5G1P05496 136 aa4.89□□□□□ -1.63
LIMA1-202ENST00000394943 CEBPGP53567 150 aa4.89□□□□□ -1.63
LIMA1-202ENST00000394943 NOP10Q9NPE3 64 aaKnown RBP4.89□□□□□ -1.63
LIMA1-202ENST00000394943 LINC01546A6NGU7 62 aa4.89□□□□□ -1.63
LIMA1-202ENST00000394943 M0R381 172 aa4.89□□□□□ -1.63
LIMA1-202ENST00000394943 PRM2P04554 102 aa4.89□□□□□ -1.63
LIMA1-202ENST00000394943 Q6ZTC4 211 aa4.89□□□□□ -1.63
LIMA1-202ENST00000394943 FER1L6-AS1Q8NA97 138 aa4.89□□□□□ -1.63
LIMA1-202ENST00000394943 SYT8Q8NBV8 401 aa4.89□□□□□ -1.63
LIMA1-202ENST00000394943 TRBV6-5A0A0K0K1A5 114 aa4.88□□□□□ -1.63
LIMA1-202ENST00000394943 SH2D6Q7Z4S9 175 aa4.88□□□□□ -1.63
LIMA1-202ENST00000394943 RNASE7Q9H1E1 156 aaKnown RBP4.88□□□□□ -1.63
LIMA1-202ENST00000394943 GATCO43716 136 aaKnown RBP4.88□□□□□ -1.63
LIMA1-202ENST00000394943 RNF212Q495C1 297 aa4.88□□□□□ -1.63
LIMA1-202ENST00000394943 PHLDA1Q8WV24 401 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-202ENST00000394943 DNAJC30Q96LL9 226 aa4.88□□□□□ -1.63
LIMA1-202ENST00000394943 TMEM191AQ9H0A3 160 aa4.88□□□□□ -1.63
LIMA1-202ENST00000394943 NOTCH1P46531 2555 aa4.88□□□□□ -1.63
LIMA1-202ENST00000394943 ORM1P02763 201 aa4.88□□□□□ -1.63
LIMA1-202ENST00000394943 MGST1P10620 155 aaKnown RBP4.88□□□□□ -1.63
LIMA1-202ENST00000394943 NANOS2P60321 138 aaKnown RBP4.88□□□□□ -1.63
LIMA1-202ENST00000394943 NHLRC2Q8NBF2 726 aa4.88□□□□□ -1.63
LIMA1-202ENST00000394943 NAT8BQ9UHF3 227 aa4.88□□□□□ -1.63
LIMA1-202ENST00000394943 FAT2Q9NYQ8 4349 aa4.88□□□□□ -1.63
LIMA1-202ENST00000394943 DAD1P61803 113 aa4.87□□□□□ -1.63
LIMA1-202ENST00000394943 LGALS9CQ6DKI2 356 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms