RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 C12orf74Q32Q52 190 aa12.42□□□□□ -0.42
PCDH1-203ENST00000394536 LINC01559Q495D7 138 aa12.42□□□□□ -0.42
PCDH1-203ENST00000394536 IGHV3OR16-12A0A075B7B8 117 aa12.42□□□□□ -0.42
PCDH1-203ENST00000394536 PPP1R17O96001 155 aa12.42□□□□□ -0.42
PCDH1-203ENST00000394536 SYT8Q8NBV8 401 aa12.42□□□□□ -0.42
PCDH1-203ENST00000394536 KLHL30-AS1Q8NEE0 82 aa12.42□□□□□ -0.42
PCDH1-203ENST00000394536 TP53TG1Q9Y2A0 90 aa12.42□□□□□ -0.42
PCDH1-203ENST00000394536 SNRPD3P62318 126 aaKnown RBP12.41□□□□□ -0.42
PCDH1-203ENST00000394536 ADORA2A-AS1P86434 159 aa12.41□□□□□ -0.42
PCDH1-203ENST00000394536 TRAV12-2A0A075B6T6 113 aa12.41□□□□□ -0.42
PCDH1-203ENST00000394536 TRAV2A0A0B4J234 112 aa12.41□□□□□ -0.42
PCDH1-203ENST00000394536 ZFHX4Q86UP3 3567 aa12.41□□□□□ -0.42
PCDH1-203ENST00000394536 CCL19Q99731 98 aa12.41□□□□□ -0.42
PCDH1-203ENST00000394536 PRSS29PA6NIE9 313 aa12.4□□□□□ -0.42
PCDH1-203ENST00000394536 TRBV12-3P01733 135 aa12.4□□□□□ -0.42
PCDH1-203ENST00000394536 RNF185Q96GF1 192 aa12.4□□□□□ -0.42
PCDH1-203ENST00000394536 MRPS12O15235 138 aaKnown RBP12.4□□□□□ -0.42
PCDH1-203ENST00000394536 C11orf21Q9P2W6 132 aa12.4□□□□□ -0.42
PCDH1-203ENST00000394536 MYMXA0A1B0GTQ4 84 aa12.4□□□□□ -0.42
PCDH1-203ENST00000394536 FGF6P10767 208 aa12.4□□□□□ -0.42
PCDH1-203ENST00000394536 HLA-DRB4P13762 266 aa12.4□□□□□ -0.42
PCDH1-203ENST00000394536 UNQ9165/PRO28630Q6UXU0 137 aa12.4□□□□□ -0.42
PCDH1-203ENST00000394536 MRAP2Q96G30 205 aa12.4□□□□□ -0.42
PCDH1-203ENST00000394536 HLA-DRB4X5D2U9 266 aa12.4□□□□□ -0.42
PCDH1-203ENST00000394536 CCDC140Q96MF4 163 aa12.39□□□□□ -0.43
PCDH1-203ENST00000394536 RAX2Q96IS3 184 aa12.39□□□□□ -0.43
PCDH1-203ENST00000394536 BLCAPP62952 87 aa12.39□□□□□ -0.43
PCDH1-203ENST00000394536 C1orf122Q6ZSJ8 110 aa12.39□□□□□ -0.43
PCDH1-203ENST00000394536 TMEM238C9JI98 176 aa12.38□□□□□ -0.43
PCDH1-203ENST00000394536 ODF3BA8MYP8 253 aa12.38□□□□□ -0.43
PCDH1-203ENST00000394536 IGLL5B9A064 214 aa12.38□□□□□ -0.43
PCDH1-203ENST00000394536 MAPKAPK5-AS1Q8N8E1 139 aa12.38□□□□□ -0.43
PCDH1-203ENST00000394536 VCX2Q9H322 139 aa12.38□□□□□ -0.43
PCDH1-203ENST00000394536 DMXL1Q9Y485 3027 aa12.37□□□□□ -0.43
PCDH1-203ENST00000394536 GNLYP22749 145 aa12.37□□□□□ -0.43
PCDH1-203ENST00000394536 C16orf54Q6UWD8 224 aa12.37□□□□□ -0.43
PCDH1-203ENST00000394536 KLK9Q9UKQ9 250 aa12.37□□□□□ -0.43
PCDH1-203ENST00000394536 PIP4P2Q8N4L2 257 aa12.37□□□□□ -0.43
PCDH1-203ENST00000394536 F8W735 103 aaPredicted RBP12.36□□□□□ -0.43
PCDH1-203ENST00000394536 ZNF876PQ49A33 203 aa12.36□□□□□ -0.43
PCDH1-203ENST00000394536 MAPK1IP1LQ8NDC0 245 aa12.36□□□□□ -0.43
PCDH1-203ENST00000394536 JPT2Q9H910 190 aa12.36□□□□□ -0.43
PCDH1-203ENST00000394536 U3KQK5 164 aa12.36□□□□□ -0.43
PCDH1-203ENST00000394536 SDHAF1A6NFY7 115 aa12.36□□□□□ -0.43
PCDH1-203ENST00000394536 VCYO14598 125 aa12.36□□□□□ -0.43
PCDH1-203ENST00000394536 TMEM95Q3KNT9 176 aa12.36□□□□□ -0.43
PCDH1-203ENST00000394536 DUSP14O95147 198 aaKnown RBP12.36□□□□□ -0.43
PCDH1-203ENST00000394536 NPC2P61916 151 aa12.36□□□□□ -0.43
PCDH1-203ENST00000394536 SPINK13Q1W4C9 94 aa12.36□□□□□ -0.43
PCDH1-203ENST00000394536 DAZ1Q9NQZ3 744 aaKnown RBP12.36□□□□□ -0.43
PCDH1-203ENST00000394536 RBAKDNA6NC62 111 aa12.35□□□□□ -0.43
PCDH1-203ENST00000394536 FAM223BA6NKX1 122 aa12.35□□□□□ -0.43
PCDH1-203ENST00000394536 AZU1P20160 251 aa12.35□□□□□ -0.43
PCDH1-203ENST00000394536 FAM223AQ8IWN6 122 aa12.35□□□□□ -0.43
PCDH1-203ENST00000394536 A0A0U1RRA0 63 aa12.35□□□□□ -0.43
PCDH1-203ENST00000394536 NDUFS8O00217 210 aa12.35□□□□□ -0.43
PCDH1-203ENST00000394536 ZNF48Q96MX3 618 aaPredicted RBP12.35□□□□□ -0.43
PCDH1-203ENST00000394536 IGHV1-69DA0A0B4J2H0 117 aa12.35□□□□□ -0.43
PCDH1-203ENST00000394536 IGHV1-69P01742 117 aa12.35□□□□□ -0.43
PCDH1-203ENST00000394536 ABCA12Q86UK0 2595 aa12.35□□□□□ -0.43
PCDH1-203ENST00000394536 KNCNA6PVL3 124 aa12.34□□□□□ -0.43
PCDH1-203ENST00000394536 RPL39P62891 51 aaKnown RBP12.34□□□□□ -0.43
PCDH1-203ENST00000394536 DLX4Q92988 240 aaPredicted RBP12.34□□□□□ -0.43
PCDH1-203ENST00000394536 SIRPDQ9H106 197 aa12.34□□□□□ -0.43
PCDH1-203ENST00000394536 TNRC18O15417 2968 aaPredicted RBP12.34□□□□□ -0.43
PCDH1-203ENST00000394536 IGHV4-39P01824 125 aa12.34□□□□□ -0.43
PCDH1-203ENST00000394536 PAPPA-AS1Q5QFB9 102 aa12.34□□□□□ -0.43
PCDH1-203ENST00000394536 ZFAND3Q9H8U3 227 aa12.34□□□□□ -0.43
PCDH1-203ENST00000394536 G3V4G9 280 aa12.33□□□□□ -0.44
PCDH1-203ENST00000394536 FOXI2Q6ZQN5 318 aa12.33□□□□□ -0.44
PCDH1-203ENST00000394536 TNFRSF18Q9Y5U5 241 aa12.33□□□□□ -0.44
PCDH1-203ENST00000394536 GAGE12HA6NDE8 117 aa12.33□□□□□ -0.44
PCDH1-203ENST00000394536 IGHV4-38-2P0DP08 117 aa12.33□□□□□ -0.44
PCDH1-203ENST00000394536 SYNJ2BPP57105 145 aa12.33□□□□□ -0.44
PCDH1-203ENST00000394536 C5orf56Q8N8D9 126 aa12.33□□□□□ -0.44
PCDH1-203ENST00000394536 SPXQ9BT56 116 aa12.33□□□□□ -0.44
PCDH1-203ENST00000394536 LRBAP50851 2863 aa12.33□□□□□ -0.44
PCDH1-203ENST00000394536 A0A1B0GV72 72 aa12.32□□□□□ -0.44
PCDH1-203ENST00000394536 F8W1H4 67 aa12.32□□□□□ -0.44
PCDH1-203ENST00000394536 NDUFA4O00483 81 aa12.32□□□□□ -0.44
PCDH1-203ENST00000394536 DYNLRB2Q8TF09 96 aa12.32□□□□□ -0.44
PCDH1-203ENST00000394536 USMG5Q96IX5 58 aa12.32□□□□□ -0.44
PCDH1-203ENST00000394536 RRN3P1Q2M238 152 aa12.32□□□□□ -0.44
PCDH1-203ENST00000394536 C9orf47Q6ZRZ4 202 aa12.32□□□□□ -0.44
PCDH1-203ENST00000394536 LAMA5O15230 3695 aa12.32□□□□□ -0.44
PCDH1-203ENST00000394536 ZZEF1O43149 2961 aa12.32□□□□□ -0.44
PCDH1-203ENST00000394536 HIVEP2P31629 2446 aa12.32□□□□□ -0.44
PCDH1-203ENST00000394536 DUX3Q96PT4 197 aa12.31□□□□□ -0.44
PCDH1-203ENST00000394536 GEMIN7Q9H840 131 aaKnown RBP12.31□□□□□ -0.44
PCDH1-203ENST00000394536 HIGD1BQ9P298 99 aa12.31□□□□□ -0.44
PCDH1-203ENST00000394536 GATD1Q8NB37 220 aa12.31□□□□□ -0.44
PCDH1-203ENST00000394536 ADARB2-AS1A8MUL3 147 aa12.31□□□□□ -0.44
PCDH1-203ENST00000394536 C20orf173Q96LM9 149 aa12.31□□□□□ -0.44
PCDH1-203ENST00000394536 HHLA3Q9XRX5 114 aa12.31□□□□□ -0.44
PCDH1-203ENST00000394536 TRAV8-2A0A0B4J237 113 aa12.3□□□□□ -0.44
PCDH1-203ENST00000394536 IGHV4-61A0A0C4DH41 118 aa12.3□□□□□ -0.44
PCDH1-203ENST00000394536 A8MWV9 139 aa12.3□□□□□ -0.44
PCDH1-203ENST00000394536 NBL1P41271 181 aa12.3□□□□□ -0.44
PCDH1-203ENST00000394536 PMVKQ15126 192 aa12.3□□□□□ -0.44
PCDH1-203ENST00000394536 PRR9Q5T870 116 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 128.5 ms