RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ARL3P36405 182 aa12.4□□□□□ -0.43
SDC4-201ENST00000372733 SFTA2Q6UW10 78 aa12.4□□□□□ -0.43
SDC4-201ENST00000372733 OR10J6PQ8NGY7 276 aa12.4□□□□□ -0.43
SDC4-201ENST00000372733 AKAP6Q13023 2319 aa12.39□□□□□ -0.43
SDC4-201ENST00000372733 TRAV41A0A0B4J266 112 aa12.39□□□□□ -0.43
SDC4-201ENST00000372733 RNASE4P34096 147 aaKnown RBP12.39□□□□□ -0.43
SDC4-201ENST00000372733 IGKV3-7A0A075B6H7 116 aa12.39□□□□□ -0.43
SDC4-201ENST00000372733 NPFFO15130 113 aa12.39□□□□□ -0.43
SDC4-201ENST00000372733 HOXA3O43365 443 aaPredicted RBP12.39□□□□□ -0.43
SDC4-201ENST00000372733 GNRH2O43555 120 aa12.39□□□□□ -0.43
SDC4-201ENST00000372733 SCGB1D4Q6XE38 83 aa12.39□□□□□ -0.43
SDC4-201ENST00000372733 LINC00477Q96M19 166 aa12.39□□□□□ -0.43
SDC4-201ENST00000372733 MRPL16Q9NX20 251 aaKnown RBP12.39□□□□□ -0.43
SDC4-201ENST00000372733 DUSP14O95147 198 aaKnown RBP12.38□□□□□ -0.43
SDC4-201ENST00000372733 EMP1P54849 157 aa12.38□□□□□ -0.43
SDC4-201ENST00000372733 SPATA25Q9BR10 227 aa12.38□□□□□ -0.43
SDC4-201ENST00000372733 SOCS3O14543 225 aa12.37□□□□□ -0.43
SDC4-201ENST00000372733 KLHL30-AS1Q8NEE0 82 aa12.37□□□□□ -0.43
SDC4-201ENST00000372733 LINC01549A6NIU2 74 aa12.37□□□□□ -0.43
SDC4-201ENST00000372733 RNASE3P12724 160 aaKnown RBP12.36□□□□□ -0.43
SDC4-201ENST00000372733 COX6B1P14854 86 aa12.36□□□□□ -0.43
SDC4-201ENST00000372733 RPL11P62913 178 aaKnown RBP12.36□□□□□ -0.43
SDC4-201ENST00000372733 BPESC1Q9GZL8 116 aa12.36□□□□□ -0.43
SDC4-201ENST00000372733 C11orf86A6NJI1 115 aa12.36□□□□□ -0.43
SDC4-201ENST00000372733 OVOL1O14753 267 aa12.36□□□□□ -0.43
SDC4-201ENST00000372733 CRYGDP07320 174 aa12.36□□□□□ -0.43
SDC4-201ENST00000372733 SCGB1A1P11684 91 aa12.36□□□□□ -0.43
SDC4-201ENST00000372733 C19orf54Q5BKX5 351 aa12.36□□□□□ -0.43
SDC4-201ENST00000372733 UBTD1Q9HAC8 227 aa12.36□□□□□ -0.43
SDC4-201ENST00000372733 CHD8Q9HCK8 2581 aa12.35□□□□□ -0.43
SDC4-201ENST00000372733 FAM223BA6NKX1 122 aa12.35□□□□□ -0.43
SDC4-201ENST00000372733 SRSF9Q13242 221 aaKnown RBP eCLIP12.35□□□□□ -0.43
SDC4-201ENST00000372733 FAM223AQ8IWN6 122 aa12.35□□□□□ -0.43
SDC4-201ENST00000372733 CELSR1Q9NYQ6 3014 aa12.35□□□□□ -0.43
SDC4-201ENST00000372733 NDUFS8O00217 210 aa12.35□□□□□ -0.43
SDC4-201ENST00000372733 APOMO95445 188 aa12.35□□□□□ -0.43
SDC4-201ENST00000372733 SMCPP49901 116 aaPredicted RBP12.35□□□□□ -0.43
SDC4-201ENST00000372733 LMO4P61968 165 aa12.35□□□□□ -0.43
SDC4-201ENST00000372733 MOB4Q9Y3A3 225 aa12.35□□□□□ -0.43
SDC4-201ENST00000372733 COL6A6A6NMZ7 2263 aa12.34□□□□□ -0.43
SDC4-201ENST00000372733 TSPAN13O95857 204 aa12.34□□□□□ -0.43
SDC4-201ENST00000372733 TSHBP01222 138 aa12.34□□□□□ -0.43
SDC4-201ENST00000372733 IGHV3-11P01762 117 aa12.34□□□□□ -0.43
SDC4-201ENST00000372733 TP53TG1Q9Y2A0 90 aa12.34□□□□□ -0.43
SDC4-201ENST00000372733 IGLV4-69A0A075B6H9 119 aa12.34□□□□□ -0.43
SDC4-201ENST00000372733 CIDEAO60543 219 aa12.34□□□□□ -0.43
SDC4-201ENST00000372733 UBE2D1P51668 147 aa12.34□□□□□ -0.43
SDC4-201ENST00000372733 LOC107984156A0A0G2JMH3 177 aa12.33□□□□□ -0.44
SDC4-201ENST00000372733 TMEM238LA0A1B0GVL6 79 aa12.33□□□□□ -0.44
SDC4-201ENST00000372733 A6NJY4 79 aa12.33□□□□□ -0.44
SDC4-201ENST00000372733 ARL17AQ8IVW1 177 aa12.33□□□□□ -0.44
SDC4-201ENST00000372733 FAM19A4Q96LR4 140 aa12.33□□□□□ -0.44
SDC4-201ENST00000372733 JPT2Q9H910 190 aa12.33□□□□□ -0.44
SDC4-201ENST00000372733 MUC4Q99102 2169 aa12.33□□□□□ -0.44
SDC4-201ENST00000372733 CFAP126Q5VTH2 177 aa12.33□□□□□ -0.44
SDC4-201ENST00000372733 DLX4Q92988 240 aaPredicted RBP12.33□□□□□ -0.44
SDC4-201ENST00000372733 MED14OSP0DP75 135 aa12.32□□□□□ -0.44
SDC4-201ENST00000372733 NBL1P41271 181 aa12.32□□□□□ -0.44
SDC4-201ENST00000372733 PSMB2P49721 201 aa12.32□□□□□ -0.44
SDC4-201ENST00000372733 RPL39P62891 51 aaKnown RBP12.32□□□□□ -0.44
SDC4-201ENST00000372733 ZFP2Q6ZN57 461 aa12.32□□□□□ -0.44
SDC4-201ENST00000372733 NDUFA4O00483 81 aa12.32□□□□□ -0.44
SDC4-201ENST00000372733 LINC00315P59091 139 aa12.32□□□□□ -0.44
SDC4-201ENST00000372733 C1QTNF4Q9BXJ3 329 aa12.32□□□□□ -0.44
SDC4-201ENST00000372733 BRD3OSQ6XYD6 125 aa12.31□□□□□ -0.44
SDC4-201ENST00000372733 NCOR2Q9Y618 2525 aa12.31□□□□□ -0.44
SDC4-201ENST00000372733 CD7P09564 240 aa12.31□□□□□ -0.44
SDC4-201ENST00000372733 SRD5A1P18405 259 aa12.31□□□□□ -0.44
SDC4-201ENST00000372733 TSPEAR-AS2P59090 65 aa12.31□□□□□ -0.44
SDC4-201ENST00000372733 CLEC2AQ6UVW9 174 aa12.31□□□□□ -0.44
SDC4-201ENST00000372733 WFDC12Q8WWY7 111 aa12.31□□□□□ -0.44
SDC4-201ENST00000372733 KIF25-AS1Q9Y6Z4 181 aa12.31□□□□□ -0.44
SDC4-201ENST00000372733 Q6ZS46 218 aa12.3□□□□□ -0.44
SDC4-201ENST00000372733 ZNF418Q8TF45 676 aaPredicted RBP12.3□□□□□ -0.44
SDC4-201ENST00000372733 ATP6V0BQ99437 205 aa12.3□□□□□ -0.44
SDC4-201ENST00000372733 A0A087WWL8 130 aa12.3□□□□□ -0.44
SDC4-201ENST00000372733 A0A0J9YY99 117 aa12.3□□□□□ -0.44
SDC4-201ENST00000372733 NXPH4O95158 308 aa12.3□□□□□ -0.44
SDC4-201ENST00000372733 FOXI1Q12951 378 aa12.3□□□□□ -0.44
SDC4-201ENST00000372733 SUMO4Q6EEV6 95 aa12.3□□□□□ -0.44
SDC4-201ENST00000372733 NFE4Q86UQ8 179 aa12.3□□□□□ -0.44
SDC4-201ENST00000372733 APRG1Q8IVJ8 170 aa12.3□□□□□ -0.44
SDC4-201ENST00000372733 IGIPA6NJ69 53 aa12.29□□□□□ -0.44
SDC4-201ENST00000372733 PPP1R17O96001 155 aa12.29□□□□□ -0.44
SDC4-201ENST00000372733 PTH2Q96A98 100 aa12.29□□□□□ -0.44
SDC4-201ENST00000372733 EDN2P20800 178 aa12.29□□□□□ -0.44
SDC4-201ENST00000372733 ABCA2Q9BZC7 2435 aa12.29□□□□□ -0.44
SDC4-201ENST00000372733 CRIP2P52943 208 aaPredicted RBP12.28□□□□□ -0.44
SDC4-201ENST00000372733 HERVK_113P61574 105 aa12.28□□□□□ -0.44
SDC4-201ENST00000372733 LY6EQ16553 131 aa12.28□□□□□ -0.44
SDC4-201ENST00000372733 POM121L12Q8N7R1 296 aa12.28□□□□□ -0.44
SDC4-201ENST00000372733 SYT8Q8NBV8 401 aa12.28□□□□□ -0.44
SDC4-201ENST00000372733 IGHV1-69DA0A0B4J2H0 117 aa12.28□□□□□ -0.44
SDC4-201ENST00000372733 UBE2D3P61077 147 aa12.28□□□□□ -0.44
SDC4-201ENST00000372733 UBE2D2P62837 147 aa12.28□□□□□ -0.44
SDC4-201ENST00000372733 KLRB1Q12918 225 aa12.28□□□□□ -0.44
SDC4-201ENST00000372733 PMVKQ15126 192 aa12.28□□□□□ -0.44
SDC4-201ENST00000372733 RHPN1-AS1Q9BWJ2 59 aa12.28□□□□□ -0.44
SDC4-201ENST00000372733 TGFAP01135 160 aa12.27□□□□□ -0.44
SDC4-201ENST00000372733 TMEM170BQ5T4T1 132 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms