RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TDRG1Q3Y452 100 aa10.15□□□□□ -0.78
PTPRF-202ENST00000372405 SPATA3Q8NHX4 192 aa10.15□□□□□ -0.78
PTPRF-202ENST00000372405 TMEM18Q96B42 140 aa10.15□□□□□ -0.78
PTPRF-202ENST00000372405 EVI2AP22794 236 aa10.15□□□□□ -0.78
PTPRF-202ENST00000372405 FAM159AQ6UWV7 190 aa10.15□□□□□ -0.78
PTPRF-202ENST00000372405 KCNS1Q96KK3 526 aa10.15□□□□□ -0.78
PTPRF-202ENST00000372405 D6R8Y8 96 aa10.14□□□□□ -0.79
PTPRF-202ENST00000372405 GAS8-AS1O95177 125 aa10.14□□□□□ -0.79
PTPRF-202ENST00000372405 PF4P02776 101 aa10.14□□□□□ -0.79
PTPRF-202ENST00000372405 MED14OSP0DP75 135 aa10.14□□□□□ -0.79
PTPRF-202ENST00000372405 RAB4AP20338 218 aa10.14□□□□□ -0.79
PTPRF-202ENST00000372405 S100A4P26447 101 aaKnown RBP10.14□□□□□ -0.79
PTPRF-202ENST00000372405 CITED1Q99966 193 aa10.14□□□□□ -0.79
PTPRF-202ENST00000372405 SMKR1H3BMG3 65 aa10.14□□□□□ -0.79
PTPRF-202ENST00000372405 CACNG7P62955 275 aa10.14□□□□□ -0.79
PTPRF-202ENST00000372405 SPANXN1Q5VSR9 72 aa10.14□□□□□ -0.79
PTPRF-202ENST00000372405 CDPF1Q6NVV7 123 aa10.14□□□□□ -0.79
PTPRF-202ENST00000372405 M0R381 172 aa10.13□□□□□ -0.79
PTPRF-202ENST00000372405 CD7P09564 240 aa10.13□□□□□ -0.79
PTPRF-202ENST00000372405 NIT1Q86X76 327 aa10.13□□□□□ -0.79
PTPRF-202ENST00000372405 IGHV1OR15-1A0A075B7D0 117 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 OR11H12B2RN74 326 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 NCR2O95944 276 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 BEAN1Q3B7T3 259 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 Q8N1Y9 231 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 FAM19A2Q8N3H0 131 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 C19orf73Q9NVV2 129 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 MDFICQ9P1T7 246 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 TRRAPQ9Y4A5 3859 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 IGHV3-16A0A0C4DH30 117 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 LINC00587B1AMM8 73 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 NXPH4O95158 308 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 RNASEKQ6P5S7 137 aaKnown RBP10.12□□□□□ -0.79
PTPRF-202ENST00000372405 Q6ZWC4 215 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 ORMDL3Q8N138 153 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 CLUHP3Q96NS8 147 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 PHLDA3Q9Y5J5 127 aa10.12□□□□□ -0.79
PTPRF-202ENST00000372405 PMCHP20382 165 aa10.11□□□□□ -0.79
PTPRF-202ENST00000372405 OR2K2Q8NGT1 345 aa10.11□□□□□ -0.79
PTPRF-202ENST00000372405 PRELID3AQ96N28 172 aa10.11□□□□□ -0.79
PTPRF-202ENST00000372405 WFDC10AQ9H1F0 79 aa10.11□□□□□ -0.79
PTPRF-202ENST00000372405 NOTCH3Q9UM47 2321 aa10.11□□□□□ -0.79
PTPRF-202ENST00000372405 CKS2P33552 79 aa10.1□□□□□ -0.79
PTPRF-202ENST00000372405 AMTP48728 403 aa10.1□□□□□ -0.79
PTPRF-202ENST00000372405 TRPT1Q86TN4 253 aaKnown RBP10.1□□□□□ -0.79
PTPRF-202ENST00000372405 C9orf85Q96MD7 179 aa10.1□□□□□ -0.79
PTPRF-202ENST00000372405 SAMD10Q9BYL1 202 aa10.1□□□□□ -0.79
PTPRF-202ENST00000372405 NPYP01303 97 aa10.1□□□□□ -0.79
PTPRF-202ENST00000372405 PRM2P04554 102 aa10.1□□□□□ -0.79
PTPRF-202ENST00000372405 GATA1P15976 413 aaPredicted RBP10.1□□□□□ -0.79
PTPRF-202ENST00000372405 JOSD1Q15040 202 aaPredicted RBP10.09□□□□□ -0.79
PTPRF-202ENST00000372405 FBN1P35555 2871 aaKnown RBP10.09□□□□□ -0.79
PTPRF-202ENST00000372405 TRAV26-2A0A0B4J265 109 aa10.08□□□□□ -0.8
PTPRF-202ENST00000372405 HSBP1O75506 76 aa10.08□□□□□ -0.8
PTPRF-202ENST00000372405 LINC00614P0C842 121 aa10.08□□□□□ -0.8
PTPRF-202ENST00000372405 PMCHL1Q16048 86 aa10.08□□□□□ -0.8
PTPRF-202ENST00000372405 STHQ8IWL8 128 aa10.08□□□□□ -0.8
PTPRF-202ENST00000372405 C14orf178Q8N769 122 aaPredicted RBP10.08□□□□□ -0.8
PTPRF-202ENST00000372405 FAM110AQ9BQ89 295 aa10.08□□□□□ -0.8
PTPRF-202ENST00000372405 IFI27P40305 119 aaPredicted RBP10.08□□□□□ -0.8
PTPRF-202ENST00000372405 KRTAP24-1Q3LI83 254 aa10.08□□□□□ -0.8
PTPRF-202ENST00000372405 CHCHD1Q96BP2 118 aaKnown RBP10.08□□□□□ -0.8
PTPRF-202ENST00000372405 JPT2Q9H910 190 aa10.08□□□□□ -0.8
PTPRF-202ENST00000372405 PPBPP02775 128 aa10.07□□□□□ -0.8
PTPRF-202ENST00000372405 SMIM15Q7Z3B0 74 aa10.07□□□□□ -0.8
PTPRF-202ENST00000372405 KIF25-AS1Q9Y6Z4 181 aa10.07□□□□□ -0.8
PTPRF-202ENST00000372405 LOC389332A0A1B0GUA5 103 aa10.06□□□□□ -0.8
PTPRF-202ENST00000372405 LINC00315P59091 139 aa10.06□□□□□ -0.8
PTPRF-202ENST00000372405 XCL2Q9UBD3 114 aa10.06□□□□□ -0.8
PTPRF-202ENST00000372405 IGHV1-24A0A0C4DH33 117 aa10.06□□□□□ -0.8
PTPRF-202ENST00000372405 CBY3A6NI87 242 aa10.06□□□□□ -0.8
PTPRF-202ENST00000372405 TNFRSF6BO95407 300 aa10.06□□□□□ -0.8
PTPRF-202ENST00000372405 GIG44P09565 113 aaPredicted RBP10.06□□□□□ -0.8
PTPRF-202ENST00000372405 HTN1P15515 57 aa10.06□□□□□ -0.8
PTPRF-202ENST00000372405 CMC4P56277 68 aaPredicted RBP10.06□□□□□ -0.8
PTPRF-202ENST00000372405 NRACQ8N912 160 aa10.06□□□□□ -0.8
PTPRF-202ENST00000372405 DPH3P1Q9H4G8 78 aa10.06□□□□□ -0.8
PTPRF-202ENST00000372405 INSP01308 110 aa10.05□□□□□ -0.8
PTPRF-202ENST00000372405 PRSS3P2Q8NHM4 247 aa10.05□□□□□ -0.8
PTPRF-202ENST00000372405 AP1S3Q96PC3 154 aa10.05□□□□□ -0.8
PTPRF-202ENST00000372405 TRGV11A0A075B6L2 103 aa10.05□□□□□ -0.8
PTPRF-202ENST00000372405 C1orf158Q8N1D5 194 aa10.05□□□□□ -0.8
PTPRF-202ENST00000372405 AP5S1Q9NUS5 200 aa10.05□□□□□ -0.8
PTPRF-202ENST00000372405 LAMTOR2Q9Y2Q5 125 aa10.05□□□□□ -0.8
PTPRF-202ENST00000372405 MAST4O15021 2626 aa10.04□□□□□ -0.8
PTPRF-202ENST00000372405 POM121L12Q8N7R1 296 aa10.04□□□□□ -0.8
PTPRF-202ENST00000372405 C20orf144Q9BQM9 153 aa10.04□□□□□ -0.8
PTPRF-202ENST00000372405 LINC00467Q9BRT7 94 aa10.04□□□□□ -0.8
PTPRF-202ENST00000372405 A0A096LNJ9 63 aa10.03□□□□□ -0.8
PTPRF-202ENST00000372405 LINC00173Q6ZV60 143 aa10.03□□□□□ -0.8
PTPRF-202ENST00000372405 FA2HQ7L5A8 372 aa10.03□□□□□ -0.8
PTPRF-202ENST00000372405 PRIMA1Q86XR5 153 aa10.03□□□□□ -0.8
PTPRF-202ENST00000372405 C11orf72Q8NBR9 251 aa10.03□□□□□ -0.8
PTPRF-202ENST00000372405 MRAP2Q96G30 205 aa10.03□□□□□ -0.8
PTPRF-202ENST00000372405 LINC01587Q99440 93 aa10.03□□□□□ -0.8
PTPRF-202ENST00000372405 A0A087WWL8 130 aa10.03□□□□□ -0.8
PTPRF-202ENST00000372405 C3orf79P0CE67 100 aa10.03□□□□□ -0.8
PTPRF-202ENST00000372405 INSL3P51460 131 aa10.03□□□□□ -0.8
PTPRF-202ENST00000372405 C9orf66Q5T8R8 295 aa10.03□□□□□ -0.8
PTPRF-202ENST00000372405 Q8N976 141 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms