RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 A0A1W2PPQ1 181 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 CHEK1O14757 476 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 IGHV4-59P01825 116 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 CRYGDP07320 174 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 MSMBP08118 114 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 LINC00694P0DN24 101 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 MGST1P10620 155 aaKnown RBP1.68□□□□□ -2.14
VPS54-202ENST00000354504 CNN1P51911 297 aaKnown RBP1.68□□□□□ -2.14
VPS54-202ENST00000354504 ERCC8Q13216 396 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 ECSCRQ19T08 205 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 IQCJQ1A5X6 159 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 DEFB112Q30KQ8 113 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 C15orf32Q32M92 178 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 OR8I2Q8N0Y5 310 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 C5orf17Q8NAS9 161 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 DLX4Q92988 240 aaPredicted RBP1.68□□□□□ -2.14
VPS54-202ENST00000354504 PFDN5Q99471 154 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 TPPP3Q9BW30 176 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 AGPAT4-IT1Q9H0P7 198 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 Q9UF83 564 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 NOTCH1P46531 2555 aa1.68□□□□□ -2.14
VPS54-202ENST00000354504 IGHV3-66A0A0C4DH42 116 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 HIGD1CA8MV81 97 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 TRGV3P03979 118 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 S100A8P05109 93 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 SLC25A5P05141 298 aaKnown RBP1.67□□□□□ -2.14
VPS54-202ENST00000354504 RD3LP0DJH9 198 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 SAPCD1Q5SSQ6 148 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 IBA57Q5T440 356 aaKnown RBP1.67□□□□□ -2.14
VPS54-202ENST00000354504 C1orf194Q5T5A4 169 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 PRSS57Q6UWY2 283 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 CSNK1G2-AS1Q8NCQ2 148 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 C20orf144Q9BQM9 153 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 RPP21Q9H633 154 aaKnown RBP1.67□□□□□ -2.14
VPS54-202ENST00000354504 PRELID1Q9Y255 219 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 IGKV2-40A0A087WW87 121 aaPredicted RBP1.67□□□□□ -2.14
VPS54-202ENST00000354504 TRBV7-1A0A0A6YYK4 115 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 TRAV40A0A0B4J280 105 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 TMEM89A2RUT3 159 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 FAM223BA6NKX1 122 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 LGALS9O00182 355 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 ZNF207O43670 478 aaKnown RBP1.67□□□□□ -2.14
VPS54-202ENST00000354504 SH2D1AO60880 128 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 HYPMO75409 117 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 TGFAP01135 160 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 IGKV2D-40P01614 121 aaPredicted RBP1.67□□□□□ -2.14
VPS54-202ENST00000354504 AMTP48728 403 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 TCL1AP56279 114 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 NANOS2P60321 138 aaKnown RBP1.67□□□□□ -2.14
VPS54-202ENST00000354504 LYZP61626 148 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 FAM223AQ8IWN6 122 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 C11orf72Q8NBR9 251 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 OR1L4Q8NGR5 311 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 KCNS1Q96KK3 526 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 C9orf85Q96MD7 179 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 SNHG12Q9BXW3 62 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 HIGD1AQ9Y241 93 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 MOB4Q9Y3A3 225 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 C1orf196B1AJZ1 125 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 K7EMT4 169 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 NDUFA4O00483 81 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 PPP1R2P9O14990 202 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 IFNA1P01562 189 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 IL4P05112 153 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 FABP1P07148 127 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 C3orf79P0CE67 100 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 SEC61BP60468 96 aaKnown RBP1.67□□□□□ -2.14
VPS54-202ENST00000354504 UBE2L3P68036 154 aaKnown RBP1.67□□□□□ -2.14
VPS54-202ENST00000354504 RHOGP84095 191 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 OR1L6Q8NGR2 347 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 CCL19Q99731 98 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 SPAG8Q99932 426 aaPredicted RBP1.67□□□□□ -2.14
VPS54-202ENST00000354504 LINC00467Q9BRT7 94 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 C16orf95Q9H693 158 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 C21orf62Q9NYP8 219 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 PSG8Q9UQ74 426 aa1.67□□□□□ -2.14
VPS54-202ENST00000354504 MUC21A0A0G2JKD1 596 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 MUC21A0A140T8X8 626 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 XKRY2A2RUG3 117 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 COX7A2P2O60397 106 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 IGHV3-11P01762 117 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 CSN3P07498 182 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 GNG4P50150 75 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 RAB9AP51151 201 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 SUB1P53999 127 aaKnown RBP eCLIP1.66□□□□□ -2.14
VPS54-202ENST00000354504 NDUFA6P56556 154 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 RAB5BP61020 215 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 RPEL1Q2QD12 228 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 DEFB113Q30KQ7 82 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 Q56UQ5 140 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 MUC21Q5SSG8 566 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 LINC01545Q5VT33 79 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 ETFRF1Q6IPR1 90 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 CLEC2AQ6UVW9 174 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 WFDC11Q8NEX6 87 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 Q8TAT8 98 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 BTF3L4Q96K17 158 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 ZFP30Q9Y2G7 519 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 TRAV41A0A0B4J266 112 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 TRBV7-9A0A0J9YWB2 115 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms