RNA–Protein interactions for RNA: ENST00000347635.8

NUP50-201, Transcript of nucleoporin 50, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP50, Length 5,233 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-201ENST00000347635 G3V4G9 280 aa11.38□□□□□ -0.59
NUP50-201ENST00000347635 J3QQQ9 107 aa11.38□□□□□ -0.59
NUP50-201ENST00000347635 SCGB1A1P11684 91 aa11.38□□□□□ -0.59
NUP50-201ENST00000347635 TMEM95Q3KNT9 176 aa11.38□□□□□ -0.59
NUP50-201ENST00000347635 IGHV1OR15-1A0A075B7D0 117 aa11.38□□□□□ -0.59
NUP50-201ENST00000347635 TRAV12-1A0A0B4J245 112 aa11.38□□□□□ -0.59
NUP50-201ENST00000347635 TRBV7-9A0A0J9YWB2 115 aa11.38□□□□□ -0.59
NUP50-201ENST00000347635 F6UB75 175 aa11.38□□□□□ -0.59
NUP50-201ENST00000347635 SPRY2O43597 315 aa11.38□□□□□ -0.59
NUP50-201ENST00000347635 ATP6V0BQ99437 205 aa11.38□□□□□ -0.59
NUP50-201ENST00000347635 INSP01308 110 aa11.38□□□□□ -0.59
NUP50-201ENST00000347635 ZNF80P51504 273 aaPredicted RBP11.38□□□□□ -0.59
NUP50-201ENST00000347635 IGLV2-11P01706 119 aa11.37□□□□□ -0.59
NUP50-201ENST00000347635 PTPRQQ9UMZ3 2332 aa11.37□□□□□ -0.59
NUP50-201ENST00000347635 C9orf47Q6ZRZ4 202 aa11.37□□□□□ -0.59
NUP50-201ENST00000347635 TRAV12-2A0A075B6T6 113 aa11.36□□□□□ -0.59
NUP50-201ENST00000347635 SH2D6Q7Z4S9 175 aa11.36□□□□□ -0.59
NUP50-201ENST00000347635 FAM208BQ5VWN6 2430 aa11.36□□□□□ -0.59
NUP50-201ENST00000347635 IGHV4-59P01825 116 aa11.36□□□□□ -0.59
NUP50-201ENST00000347635 RBX1P62877 108 aa11.36□□□□□ -0.59
NUP50-201ENST00000347635 WNK2Q9Y3S1 2297 aa11.36□□□□□ -0.59
NUP50-201ENST00000347635 CRIP1P50238 77 aa11.36□□□□□ -0.59
NUP50-201ENST00000347635 CUL9Q8IWT3 2517 aa11.36□□□□□ -0.59
NUP50-201ENST00000347635 IGLC6P0CF74 106 aa11.36□□□□□ -0.59
NUP50-201ENST00000347635 SIRPDQ9H106 197 aa11.36□□□□□ -0.59
NUP50-201ENST00000347635 C16orf54Q6UWD8 224 aa11.35□□□□□ -0.59
NUP50-201ENST00000347635 RNASE1P07998 156 aaKnown RBP11.35□□□□□ -0.59
NUP50-201ENST00000347635 FGF6P10767 208 aa11.35□□□□□ -0.59
NUP50-201ENST00000347635 RASL10AQ92737 203 aa11.35□□□□□ -0.59
NUP50-201ENST00000347635 TOMM6Q96B49 74 aa11.35□□□□□ -0.59
NUP50-201ENST00000347635 ADARB2-AS1A8MUL3 147 aa11.35□□□□□ -0.59
NUP50-201ENST00000347635 U3KQK5 164 aa11.35□□□□□ -0.59
NUP50-201ENST00000347635 TMEM89A2RUT3 159 aa11.35□□□□□ -0.59
NUP50-201ENST00000347635 TMEM86BQ8N661 226 aa11.35□□□□□ -0.59
NUP50-201ENST00000347635 RBMY1BA6NDE4 496 aaKnown RBP11.34□□□□□ -0.59
NUP50-201ENST00000347635 RBMY1EA6NEQ0 496 aaKnown RBP11.34□□□□□ -0.59
NUP50-201ENST00000347635 RBMY1DP0C7P1 496 aaKnown RBP11.34□□□□□ -0.59
NUP50-201ENST00000347635 RBMY1A1P0DJD3 496 aaKnown RBP11.34□□□□□ -0.59
NUP50-201ENST00000347635 RBMY1CP0DJD4 496 aa11.34□□□□□ -0.59
NUP50-201ENST00000347635 IGHV4-38-2P0DP08 117 aa11.34□□□□□ -0.59
NUP50-201ENST00000347635 PHLDA1Q8WV24 401 aaPredicted RBP11.34□□□□□ -0.59
NUP50-201ENST00000347635 H3BMM0 161 aa11.33□□□□□ -0.59
NUP50-201ENST00000347635 WFDC2Q14508 124 aa11.33□□□□□ -0.59
NUP50-201ENST00000347635 UBE2WQ96B02 151 aa11.33□□□□□ -0.59
NUP50-201ENST00000347635 ANKHD1Q8IWZ3 2542 aaKnown RBP11.33□□□□□ -0.6
NUP50-201ENST00000347635 KIAA1549Q9HCM3 1950 aa11.33□□□□□ -0.6
NUP50-201ENST00000347635 TRAV8-3A0A0A6YYJ7 113 aa11.33□□□□□ -0.6
NUP50-201ENST00000347635 TRGV4A0A0C4DH28 118 aa11.33□□□□□ -0.6
NUP50-201ENST00000347635 ZFP36P26651 326 aaKnown RBP11.33□□□□□ -0.6
NUP50-201ENST00000347635 ACACBO00763 2458 aa11.33□□□□□ -0.6
NUP50-201ENST00000347635 C19orf84I3L1E1 186 aa11.33□□□□□ -0.6
NUP50-201ENST00000347635 HCFC1P51610 2035 aa11.33□□□□□ -0.6
NUP50-201ENST00000347635 SLC25A20O43772 301 aa11.33□□□□□ -0.6
NUP50-201ENST00000347635 LGALS1P09382 135 aaKnown RBP11.33□□□□□ -0.6
NUP50-201ENST00000347635 VWC2LB2RUY7 222 aa11.32□□□□□ -0.6
NUP50-201ENST00000347635 RPL36AP83881 106 aaKnown RBP11.32□□□□□ -0.6
NUP50-201ENST00000347635 BAALCQ8WXS3 180 aa11.32□□□□□ -0.6
NUP50-201ENST00000347635 RPL36ALQ969Q0 106 aaKnown RBP11.32□□□□□ -0.6
NUP50-201ENST00000347635 KNCNA6PVL3 124 aa11.32□□□□□ -0.6
NUP50-201ENST00000347635 DEFB131AP59861 70 aa11.32□□□□□ -0.6
NUP50-201ENST00000347635 TCTEX1D4Q5JR98 221 aa11.32□□□□□ -0.6
NUP50-201ENST00000347635 SUMO4Q6EEV6 95 aa11.32□□□□□ -0.6
NUP50-201ENST00000347635 ODF3BA8MYP8 253 aa11.32□□□□□ -0.6
NUP50-201ENST00000347635 RHOHQ15669 191 aa11.32□□□□□ -0.6
NUP50-201ENST00000347635 TRGV1A0A0A0MS02 117 aa11.32□□□□□ -0.6
NUP50-201ENST00000347635 LMO4P61968 165 aa11.32□□□□□ -0.6
NUP50-201ENST00000347635 TNRC6BQ9UPQ9 1833 aaKnown RBP11.31□□□□□ -0.6
NUP50-201ENST00000347635 URB1-AS1Q96HZ7 61 aa11.31□□□□□ -0.6
NUP50-201ENST00000347635 ZFP2Q6ZN57 461 aa11.31□□□□□ -0.6
NUP50-201ENST00000347635 C2orf91Q6ZV80 131 aa11.31□□□□□ -0.6
NUP50-201ENST00000347635 C5orf56Q8N8D9 126 aa11.31□□□□□ -0.6
NUP50-201ENST00000347635 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.31□□□□□ -0.63e-6■■■■□ 22.7
NUP50-201ENST00000347635 E9PLD3 99 aa11.31□□□□□ -0.6
NUP50-201ENST00000347635 LEPROTO15243 131 aa11.31□□□□□ -0.6
NUP50-201ENST00000347635 LY6LH3BQJ8 138 aa11.3□□□□□ -0.6
NUP50-201ENST00000347635 NDUFA12Q9UI09 145 aa11.3□□□□□ -0.6
NUP50-201ENST00000347635 RHODO00212 210 aa11.3□□□□□ -0.6
NUP50-201ENST00000347635 C11orf71Q6IPW1 123 aa11.3□□□□□ -0.6
NUP50-201ENST00000347635 NRGNQ92686 78 aa11.3□□□□□ -0.6
NUP50-201ENST00000347635 TNFRSF13BO14836 293 aaPredicted RBP11.29□□□□□ -0.6
NUP50-201ENST00000347635 MED14OSP0DP75 135 aa11.29□□□□□ -0.6
NUP50-201ENST00000347635 CFC1BP0CG36 223 aa11.29□□□□□ -0.6
NUP50-201ENST00000347635 CFC1P0CG37 223 aa11.29□□□□□ -0.6
NUP50-201ENST00000347635 CRPP02741 224 aa11.29□□□□□ -0.6
NUP50-201ENST00000347635 HTN3P15516 51 aa11.29□□□□□ -0.6
NUP50-201ENST00000347635 LINC00158P58513 81 aa11.29□□□□□ -0.6
NUP50-201ENST00000347635 ABCA1O95477 2261 aa11.29□□□□□ -0.6
NUP50-201ENST00000347635 CEP350Q5VT06 3117 aa11.28□□□□□ -0.6
NUP50-201ENST00000347635 TRAV13-1A0A0B4J241 112 aa11.28□□□□□ -0.6
NUP50-201ENST00000347635 IGHV3-53P01767 116 aa11.28□□□□□ -0.6
NUP50-201ENST00000347635 PRIMA1Q86XR5 153 aa11.28□□□□□ -0.6
NUP50-201ENST00000347635 PCNTO95613 3336 aa11.28□□□□□ -0.6
NUP50-201ENST00000347635 RPL35AP18077 110 aaKnown RBP11.28□□□□□ -0.6
NUP50-201ENST00000347635 CCDC140Q96MF4 163 aa11.27□□□□□ -0.6
NUP50-201ENST00000347635 RNF185Q96GF1 192 aa11.27□□□□□ -0.61
NUP50-201ENST00000347635 CHCHD5Q9BSY4 110 aa11.27□□□□□ -0.61
NUP50-201ENST00000347635 Q71RC1 249 aaPredicted RBP11.26□□□□□ -0.61
NUP50-201ENST00000347635 TNCP24821 2201 aa11.26□□□□□ -0.61
NUP50-201ENST00000347635 IGHG2P01859 326 aa11.26□□□□□ -0.61
NUP50-201ENST00000347635 APOC4P55056 127 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms