RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 ZNF501Q96CX3 271 aaPredicted RBP3.87□□□□□ -1.79
CSMD3-201ENST00000297405 FAM222AQ5U5X8 452 aa3.87□□□□□ -1.79
CSMD3-201ENST00000297405 ZNF625Q96I27 306 aaPredicted RBP3.87□□□□□ -1.79
CSMD3-201ENST00000297405 SND1-IT1Q9HBX3 110 aa3.87□□□□□ -1.79
CSMD3-201ENST00000297405 C5orf63A6NC05 138 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 NTF4P34130 210 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 LOXL1Q08397 574 aaPredicted RBP3.86□□□□□ -1.79
CSMD3-201ENST00000297405 BPY2O14599 106 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 MIAQ16674 131 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 ITLN2Q8WWU7 325 aaPredicted RBP3.86□□□□□ -1.79
CSMD3-201ENST00000297405 IGHV5-10-1A0A0J9YXX1 117 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 GATA4P43694 442 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 DYNAPQ8N1N2 210 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 MAP1AP78559 2803 aaPredicted RBP3.86□□□□□ -1.79
CSMD3-201ENST00000297405 IGHV3-64A0A075B6Q5 118 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 TOMM6Q96B49 74 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 PATE4P0C8F1 98 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 CASC2Q6XLA1 102 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 CSDC2Q9Y534 153 aaKnown RBP3.86□□□□□ -1.79
CSMD3-201ENST00000297405 LOC107984640A0A0U1RRK4 108 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 CFHR1Q03591 330 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 LINC00311Q8N616 119 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 CHD6Q8TD26 2715 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 C5orf67F2Z3F1 127 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 A0A1B0GW54 56 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 C1orf53Q5VUE5 145 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 IGLC6P0CF74 106 aa3.86□□□□□ -1.79
CSMD3-201ENST00000297405 TRAV23DV6A0A075B6W5 121 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 A0A0G2JNJ9 132 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 DEFB109BQ30KR1 87 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 Q9UFV3 132 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 ETV2O00321 342 aaPredicted RBP3.85□□□□□ -1.79
CSMD3-201ENST00000297405 PCP2Q8IVA1 136 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 IGLV3-12A0A075B6K2 115 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 IGKV1-9A0A0C4DH69 117 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.85□□□□□ -1.79
CSMD3-201ENST00000297405 SAP30O75446 220 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 CLEC19AQ6UXS0 136 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 C16orf54Q6UWD8 224 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 PPIFP30405 207 aaKnown RBP3.85□□□□□ -1.79
CSMD3-201ENST00000297405 PSG7Q13046 419 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 LILRA6Q6PI73 481 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 FAM19A5Q7Z5A7 132 aaPredicted RBP3.85□□□□□ -1.79
CSMD3-201ENST00000297405 UBE2D4Q9Y2X8 147 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 TRBV7-3A0A075B6L6 115 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 TMEM61Q8N0U2 210 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 C20orf197Q8N268 126 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 Q8NFD4 153 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 UBE2D2P62837 147 aa3.85□□□□□ -1.79
CSMD3-201ENST00000297405 IGHV3OR16-12A0A075B7B8 117 aa3.84□□□□□ -1.79
CSMD3-201ENST00000297405 TRGV1A0A0A0MS02 117 aa3.84□□□□□ -1.79
CSMD3-201ENST00000297405 ZNF883P0CG24 379 aa3.84□□□□□ -1.79
CSMD3-201ENST00000297405 FXYD2P54710 66 aa3.84□□□□□ -1.79
CSMD3-201ENST00000297405 GFI1Q99684 422 aa3.84□□□□□ -1.79
CSMD3-201ENST00000297405 IGKV3D-20A0A0C4DH25 116 aa3.84□□□□□ -1.79
CSMD3-201ENST00000297405 FOXE3Q13461 319 aa3.84□□□□□ -1.79
CSMD3-201ENST00000297405 MDFICQ9P1T7 246 aa3.84□□□□□ -1.79
CSMD3-201ENST00000297405 COL6A5A8TX70 2615 aa3.84□□□□□ -1.79
CSMD3-201ENST00000297405 IGKV2-40A0A087WW87 121 aaPredicted RBP3.84□□□□□ -1.79
CSMD3-201ENST00000297405 IGKV2D-40P01614 121 aaPredicted RBP3.84□□□□□ -1.79
CSMD3-201ENST00000297405 CD164L2Q6UWJ8 174 aa3.84□□□□□ -1.79
CSMD3-201ENST00000297405 ZNRF2Q8NHG8 242 aa3.84□□□□□ -1.79
CSMD3-201ENST00000297405 Q9H8V8 135 aa3.84□□□□□ -1.79
CSMD3-201ENST00000297405 NDUFA4O00483 81 aa3.84□□□□□ -1.8
CSMD3-201ENST00000297405 GPHA2Q96T91 129 aa3.84□□□□□ -1.8
CSMD3-201ENST00000297405 HRKO00198 91 aa3.84□□□□□ -1.8
CSMD3-201ENST00000297405 MT-ATP8P03928 68 aa3.84□□□□□ -1.8
CSMD3-201ENST00000297405 COX17Q14061 63 aa3.84□□□□□ -1.8
CSMD3-201ENST00000297405 TEX49A0A1B0GTD5 131 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 FOXF2Q12947 444 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 IGHV1OR15-1A0A075B7D0 117 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 TRBV10-1A0A0K0K1A3 114 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 C5orf38Q86SI9 138 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 CLUHP3Q96NS8 147 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 KLK9Q9UKQ9 250 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 TINCRA0A1B0GVN0 87 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 TMEM240Q5SV17 173 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 VOPP1Q96AW1 172 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 IGHV1-8P0DP01 117 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 DEFB103AP81534 67 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 AGPAT4-IT1Q9H0P7 198 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 TRAV4A0A0B4J268 109 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 APOC4P55056 127 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 TRBV10-3A0A0K0K1G6 114 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 WIPF3A6NGB9 483 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 F8WDY8 70 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 BUB1B-PAK6H3BSN5 160 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 Q6JHZ5 121 aa3.83□□□□□ -1.8
CSMD3-201ENST00000297405 CFAP126Q5VTH2 177 aa3.82□□□□□ -1.8
CSMD3-201ENST00000297405 C20orf204Q6ZNR8 217 aa3.82□□□□□ -1.8
CSMD3-201ENST00000297405 A0A1B0GUS0 222 aa3.82□□□□□ -1.8
CSMD3-201ENST00000297405 H3BRN7 92 aa3.82□□□□□ -1.8
CSMD3-201ENST00000297405 IGHV3-48P01763 117 aa3.82□□□□□ -1.8
CSMD3-201ENST00000297405 SERTAD4-AS1Q5TG53 156 aa3.82□□□□□ -1.8
CSMD3-201ENST00000297405 MIFP14174 115 aa3.82□□□□□ -1.8
CSMD3-201ENST00000297405 CYYR1Q96J86 154 aa3.82□□□□□ -1.8
CSMD3-201ENST00000297405 HOXB4P17483 251 aaPredicted RBP3.82□□□□□ -1.8
CSMD3-201ENST00000297405 FGF23Q9GZV9 251 aaPredicted RBP3.82□□□□□ -1.8
CSMD3-201ENST00000297405 A0A0U1RRA0 63 aa3.82□□□□□ -1.8
CSMD3-201ENST00000297405 COX7B2Q8TF08 81 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms