RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 FGF6P10767 208 aa12.56□□□□□ -0.4
VPS54-201ENST00000272322 ODF1Q14990 250 aa12.56□□□□□ -0.4
VPS54-201ENST00000272322 NXT2Q9NPJ8 142 aaKnown RBP12.56□□□□□ -0.4
VPS54-201ENST00000272322 APCP25054 2843 aa12.56□□□□□ -0.4
VPS54-201ENST00000272322 PPBPP02775 128 aa12.56□□□□□ -0.4
VPS54-201ENST00000272322 U3KQE9 123 aa12.56□□□□□ -0.4
VPS54-201ENST00000272322 NDUFA4O00483 81 aa12.56□□□□□ -0.4
VPS54-201ENST00000272322 ASIPP42127 132 aa12.56□□□□□ -0.4
VPS54-201ENST00000272322 KRTAP10-9P60411 292 aa12.56□□□□□ -0.4
VPS54-201ENST00000272322 A6NDX4 124 aa12.55□□□□□ -0.4
VPS54-201ENST00000272322 DAZ1Q9NQZ3 744 aaKnown RBP12.55□□□□□ -0.4
VPS54-201ENST00000272322 TRAV21A0A0B4J279 112 aa12.55□□□□□ -0.4
VPS54-201ENST00000272322 LAGE3Q14657 143 aa12.55□□□□□ -0.4
VPS54-201ENST00000272322 RBAKDNA6NC62 111 aa12.54□□□□□ -0.4
VPS54-201ENST00000272322 B4DSR2 109 aa12.54□□□□□ -0.4
VPS54-201ENST00000272322 IGKCP01834 107 aa12.54□□□□□ -0.4
VPS54-201ENST00000272322 COX8CQ7Z4L0 72 aa12.54□□□□□ -0.4
VPS54-201ENST00000272322 NRACQ8N912 160 aa12.54□□□□□ -0.4
VPS54-201ENST00000272322 DPF1Q92782 380 aa12.54□□□□□ -0.4
VPS54-201ENST00000272322 ITPR2Q14571 2701 aa12.54□□□□□ -0.4
VPS54-201ENST00000272322 SFTA2Q6UW10 78 aa12.54□□□□□ -0.4
VPS54-201ENST00000272322 SPINK13Q1W4C9 94 aa12.54□□□□□ -0.4
VPS54-201ENST00000272322 MEGF9Q9H1U4 602 aa12.54□□□□□ -0.4
VPS54-201ENST00000272322 Q8N8P6 123 aa12.53□□□□□ -0.4
VPS54-201ENST00000272322 PEF1Q9UBV8 284 aaKnown RBP12.53□□□□□ -0.4
VPS54-201ENST00000272322 IGHV3-73A0A0B4J1V6 119 aa12.53□□□□□ -0.4
VPS54-201ENST00000272322 TMEM190Q8WZ59 177 aa12.53□□□□□ -0.4
VPS54-201ENST00000272322 FAM159AQ6UWV7 190 aa12.53□□□□□ -0.4
VPS54-201ENST00000272322 C18orf65Q6ZTR6 163 aa12.53□□□□□ -0.4
VPS54-201ENST00000272322 SCGB3A1Q96QR1 104 aa12.53□□□□□ -0.4
VPS54-201ENST00000272322 ZNF256Q9Y2P7 627 aaPredicted RBP12.53□□□□□ -0.4
VPS54-201ENST00000272322 CNFNQ9BYD5 112 aa12.52□□□□□ -0.4
VPS54-201ENST00000272322 BOD1L2Q8IYS8 172 aa12.52□□□□□ -0.41
VPS54-201ENST00000272322 FXYD2P54710 66 aa12.52□□□□□ -0.41
VPS54-201ENST00000272322 MAPKAPK5-AS1Q8N8E1 139 aa12.52□□□□□ -0.41
VPS54-201ENST00000272322 RASL10AQ92737 203 aa12.52□□□□□ -0.41
VPS54-201ENST00000272322 HHLA3Q9XRX5 114 aa12.52□□□□□ -0.41
VPS54-201ENST00000272322 GAGE10A6NGK3 116 aa12.51□□□□□ -0.41
VPS54-201ENST00000272322 BBC3Q96PG8 261 aaPredicted RBP12.51□□□□□ -0.41
VPS54-201ENST00000272322 PSMG3-AS1Q96PY0 264 aa12.51□□□□□ -0.41
VPS54-201ENST00000272322 SMPXQ9UHP9 88 aa12.51□□□□□ -0.41
VPS54-201ENST00000272322 SUMO2P61956 95 aaKnown RBP12.51□□□□□ -0.41
VPS54-201ENST00000272322 C19orf54Q5BKX5 351 aa12.51□□□□□ -0.41
VPS54-201ENST00000272322 HIST2H2BCQ6DN03 193 aa12.51□□□□□ -0.41
VPS54-201ENST00000272322 MTURNQ8N3F0 131 aa12.51□□□□□ -0.41
VPS54-201ENST00000272322 CSTL1Q9H114 145 aa12.51□□□□□ -0.41
VPS54-201ENST00000272322 NHP2Q9NX24 153 aaKnown RBP12.51□□□□□ -0.41
VPS54-201ENST00000272322 MDFICQ9P1T7 246 aa12.51□□□□□ -0.41
VPS54-201ENST00000272322 DPM2O94777 84 aa12.5□□□□□ -0.41
VPS54-201ENST00000272322 SRSF1Q07955 248 aaKnown RBP eCLIP12.5□□□□□ -0.41
VPS54-201ENST00000272322 USMG5Q96IX5 58 aa12.5□□□□□ -0.41
VPS54-201ENST00000272322 JMJD8Q96S16 334 aa12.5□□□□□ -0.41
VPS54-201ENST00000272322 HELZ2Q9BYK8 2649 aaKnown RBP12.5□□□□□ -0.41
VPS54-201ENST00000272322 A0A0G2JLM5 398 aa12.5□□□□□ -0.41
VPS54-201ENST00000272322 HECTD1Q9ULT8 2610 aa12.5□□□□□ -0.41
VPS54-201ENST00000272322 RNASE3P12724 160 aaKnown RBP12.5□□□□□ -0.41
VPS54-201ENST00000272322 SMIM2Q9BVW6 85 aa12.5□□□□□ -0.41
VPS54-201ENST00000272322 IGLV2-18A0A075B6J9 118 aa12.49□□□□□ -0.41
VPS54-201ENST00000272322 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.49□□□□□ -0.41
VPS54-201ENST00000272322 OVOL1O14753 267 aa12.49□□□□□ -0.41
VPS54-201ENST00000272322 RPL39P62891 51 aaKnown RBP12.49□□□□□ -0.41
VPS54-201ENST00000272322 SOCS3O14543 225 aa12.49□□□□□ -0.41
VPS54-201ENST00000272322 GAGE12BA1L429 117 aa12.48□□□□□ -0.41
VPS54-201ENST00000272322 FASNP49327 2511 aaKnown RBP12.48□□□□□ -0.41
VPS54-201ENST00000272322 TRBV25-1A0A075B6N4 114 aa12.47□□□□□ -0.41
VPS54-201ENST00000272322 CD300EQ496F6 205 aaPredicted RBP12.47□□□□□ -0.41
VPS54-201ENST00000272322 ARL6IP6Q8N6S5 226 aa12.47□□□□□ -0.41
VPS54-201ENST00000272322 DPH3P1Q9H4G8 78 aa12.47□□□□□ -0.41
VPS54-201ENST00000272322 KNCNA6PVL3 124 aa12.47□□□□□ -0.41
VPS54-201ENST00000272322 SCGB2A2Q13296 93 aa12.47□□□□□ -0.41
VPS54-201ENST00000272322 C2orf66Q6UXQ4 117 aa12.47□□□□□ -0.41
VPS54-201ENST00000272322 HOXA3O43365 443 aaPredicted RBP12.47□□□□□ -0.41
VPS54-201ENST00000272322 DUSP14O95147 198 aaKnown RBP12.47□□□□□ -0.41
VPS54-201ENST00000272322 OPRPNQ99935 248 aaPredicted RBP12.47□□□□□ -0.41
VPS54-201ENST00000272322 VPS25Q9BRG1 176 aa12.47□□□□□ -0.41
VPS54-201ENST00000272322 CHAC1Q9BUX1 264 aa12.47□□□□□ -0.41
VPS54-201ENST00000272322 ADAMTSL5Q6ZMM2 481 aa12.46□□□□□ -0.41
VPS54-201ENST00000272322 IGHV4OR15-8A0A075B7B6 117 aa12.46□□□□□ -0.41
VPS54-201ENST00000272322 A0A087WW49 117 aa12.46□□□□□ -0.41
VPS54-201ENST00000272322 SAP30O75446 220 aa12.46□□□□□ -0.41
VPS54-201ENST00000272322 ZNF56Q15929 161 aa12.46□□□□□ -0.41
VPS54-201ENST00000272322 KLHL30-AS1Q8NEE0 82 aa12.46□□□□□ -0.41
VPS54-201ENST00000272322 NBEAL2Q6ZNJ1 2754 aa12.46□□□□□ -0.41
VPS54-201ENST00000272322 A6NDN8 102 aa12.46□□□□□ -0.42
VPS54-201ENST00000272322 PCP4P48539 62 aa12.46□□□□□ -0.42
VPS54-201ENST00000272322 IGHV3-64A0A075B6Q5 118 aa12.45□□□□□ -0.42
VPS54-201ENST00000272322 CYSLTR1Q9Y271 337 aa12.45□□□□□ -0.42
VPS54-201ENST00000272322 NDUFS8O00217 210 aa12.45□□□□□ -0.42
VPS54-201ENST00000272322 ATP5LO75964 103 aa12.45□□□□□ -0.42
VPS54-201ENST00000272322 IGLV1-40P01703 118 aa12.45□□□□□ -0.42
VPS54-201ENST00000272322 SLURP1P55000 103 aa12.45□□□□□ -0.42
VPS54-201ENST00000272322 HSD52Q0P140 79 aa12.45□□□□□ -0.42
VPS54-201ENST00000272322 MRPL53Q96EL3 112 aaKnown RBP12.45□□□□□ -0.42
VPS54-201ENST00000272322 A0A1W2PRX2 142 aa12.44□□□□□ -0.42
VPS54-201ENST00000272322 OR1N2Q8NGR9 330 aa12.44□□□□□ -0.42
VPS54-201ENST00000272322 HIST1H4GQ99525 98 aa12.44□□□□□ -0.42
VPS54-201ENST00000272322 CHTOPQ9Y3Y2 248 aaKnown RBP12.44□□□□□ -0.42
VPS54-201ENST00000272322 DCANP1Q8TF63 244 aa12.44□□□□□ -0.42
VPS54-201ENST00000272322 CST9LQ9H4G1 147 aa12.44□□□□□ -0.42
VPS54-201ENST00000272322 COX6B1P14854 86 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms