RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 TMEM256Q8N2U0 113 aa11.32□□□□□ -0.6
UPF1-206ENST00000598471 KIR2DL5BQ8NHK3 375 aa11.32□□□□□ -0.6
UPF1-206ENST00000598471 TMEM208Q9BTX3 173 aa11.32□□□□□ -0.6
UPF1-206ENST00000598471 GFRA4Q9GZZ7 299 aa11.32□□□□□ -0.6
UPF1-206ENST00000598471 GOLT1BQ9Y3E0 138 aa11.32□□□□□ -0.6
UPF1-206ENST00000598471 AGRNO00468 2067 aa11.32□□□□□ -0.6
UPF1-206ENST00000598471 IGHV1OR15-1A0A075B7D0 117 aa11.31□□□□□ -0.6
UPF1-206ENST00000598471 ANXA2RQ3ZCQ2 193 aa11.31□□□□□ -0.6
UPF1-206ENST00000598471 MUC21Q5SSG8 566 aa11.31□□□□□ -0.6
UPF1-206ENST00000598471 TMEM88Q6PEY1 159 aa11.31□□□□□ -0.6
UPF1-206ENST00000598471 CBLN2Q8IUK8 224 aa11.31□□□□□ -0.6
UPF1-206ENST00000598471 PYGO2Q9BRQ0 406 aa11.31□□□□□ -0.6
UPF1-206ENST00000598471 IGKV3D-20A0A0C4DH25 116 aa11.3□□□□□ -0.6
UPF1-206ENST00000598471 SMIM27A0A1W2PRY6 76 aa11.3□□□□□ -0.6
UPF1-206ENST00000598471 TCL1AP56279 114 aa11.3□□□□□ -0.6
UPF1-206ENST00000598471 KPRPQ5T749 579 aaPredicted RBP11.3□□□□□ -0.6
UPF1-206ENST00000598471 BTF3L4Q96K17 158 aa11.3□□□□□ -0.6
UPF1-206ENST00000598471 LINC01587Q99440 93 aa11.3□□□□□ -0.6
UPF1-206ENST00000598471 NEU1Q99519 415 aa11.3□□□□□ -0.6
UPF1-206ENST00000598471 C11orf21Q9P2W6 132 aa11.3□□□□□ -0.6
UPF1-206ENST00000598471 NAT8BQ9UHF3 227 aa11.3□□□□□ -0.6
UPF1-206ENST00000598471 URGCP-MRPS24S4R325 110 aa11.3□□□□□ -0.6
UPF1-206ENST00000598471 TRGV11A0A075B6L2 103 aa11.29□□□□□ -0.6
UPF1-206ENST00000598471 TRAV9-1A0A075B6T8 112 aa11.29□□□□□ -0.6
UPF1-206ENST00000598471 A0A1W2PPQ1 181 aa11.29□□□□□ -0.6
UPF1-206ENST00000598471 A8MZ25 164 aa11.29□□□□□ -0.6
UPF1-206ENST00000598471 S100A4P26447 101 aaKnown RBP11.29□□□□□ -0.6
UPF1-206ENST00000598471 ASIPP42127 132 aa11.29□□□□□ -0.6
UPF1-206ENST00000598471 TDRG1Q3Y452 100 aa11.29□□□□□ -0.6
UPF1-206ENST00000598471 Q6ZQT7 251 aa11.29□□□□□ -0.6
UPF1-206ENST00000598471 BORCS7Q96B45 105 aa11.29□□□□□ -0.6
UPF1-206ENST00000598471 LINC00467Q9BRT7 94 aa11.29□□□□□ -0.6
UPF1-206ENST00000598471 GRIFINA4D1Z8 144 aa11.28□□□□□ -0.6
UPF1-206ENST00000598471 HIGD1CA8MV81 97 aa11.28□□□□□ -0.6
UPF1-206ENST00000598471 UBE2CO00762 179 aa11.28□□□□□ -0.6
UPF1-206ENST00000598471 RBMY1A1P0DJD3 496 aaKnown RBP11.28□□□□□ -0.6
UPF1-206ENST00000598471 RBMY1CP0DJD4 496 aa11.28□□□□□ -0.6
UPF1-206ENST00000598471 GZMBP10144 247 aa11.28□□□□□ -0.6
UPF1-206ENST00000598471 RBMY1FQ15415 496 aaKnown RBP11.28□□□□□ -0.6
UPF1-206ENST00000598471 FER1L6-AS1Q8NA97 138 aa11.28□□□□□ -0.6
UPF1-206ENST00000598471 CBY3A6NI87 242 aa11.27□□□□□ -0.61
UPF1-206ENST00000598471 GIG44P09565 113 aaPredicted RBP11.27□□□□□ -0.61
UPF1-206ENST00000598471 FAM3BP58499 235 aaPredicted RBP11.27□□□□□ -0.61
UPF1-206ENST00000598471 TPPP3Q9BW30 176 aa11.27□□□□□ -0.61
UPF1-206ENST00000598471 IGHV3OR16-12A0A075B7B8 117 aa11.26□□□□□ -0.61
UPF1-206ENST00000598471 F2Z2F3 143 aa11.26□□□□□ -0.61
UPF1-206ENST00000598471 TYMSP04818 313 aa11.26□□□□□ -0.61
UPF1-206ENST00000598471 MED14OSP0DP75 135 aa11.26□□□□□ -0.61
UPF1-206ENST00000598471 FOXA3P55318 350 aaPredicted RBP11.26□□□□□ -0.61
UPF1-206ENST00000598471 ELOBQ15370 118 aa11.26□□□□□ -0.61
UPF1-206ENST00000598471 DNLZQ5SXM8 178 aa11.26□□□□□ -0.61
UPF1-206ENST00000598471 C1orf158Q8N1D5 194 aa11.26□□□□□ -0.61
UPF1-206ENST00000598471 NUP35Q8NFH5 326 aa11.26□□□□□ -0.61
UPF1-206ENST00000598471 GTSF1Q8WW33 167 aa11.26□□□□□ -0.61
UPF1-206ENST00000598471 PGLYRP4Q96LB8 373 aa11.26□□□□□ -0.61
UPF1-206ENST00000598471 IGLC6P0CF74 106 aa11.25□□□□□ -0.61
UPF1-206ENST00000598471 HTN1P15515 57 aa11.25□□□□□ -0.61
UPF1-206ENST00000598471 PKD1L1Q8TDX9 2849 aa11.25□□□□□ -0.61
UPF1-206ENST00000598471 TRBV24-1A0A075B6N3 115 aa11.24□□□□□ -0.61
UPF1-206ENST00000598471 H3BVH4 76 aa11.24□□□□□ -0.61
UPF1-206ENST00000598471 GNRH2O43555 120 aa11.24□□□□□ -0.61
UPF1-206ENST00000598471 OR5AL1P0C617 328 aa11.24□□□□□ -0.61
UPF1-206ENST00000598471 CTRLP40313 264 aa11.24□□□□□ -0.61
UPF1-206ENST00000598471 ZNF415Q09FC8 603 aa11.24□□□□□ -0.61
UPF1-206ENST00000598471 ATP5L2Q7Z4Y8 100 aa11.24□□□□□ -0.61
UPF1-206ENST00000598471 CSNK1G2-AS1Q8NCQ2 148 aa11.24□□□□□ -0.61
UPF1-206ENST00000598471 MGAM2Q2M2H8 2515 aa11.23□□□□□ -0.61
UPF1-206ENST00000598471 IGHV3-16A0A0C4DH30 117 aa11.23□□□□□ -0.61
UPF1-206ENST00000598471 A0A1B0GUT8 65 aa11.23□□□□□ -0.61
UPF1-206ENST00000598471 ARMS2P0C7Q2 107 aa11.23□□□□□ -0.61
UPF1-206ENST00000598471 CACNG7P62955 275 aa11.23□□□□□ -0.61
UPF1-206ENST00000598471 RIGQ13278 110 aa11.23□□□□□ -0.61
UPF1-206ENST00000598471 LYZL1Q6UWQ5 148 aa11.23□□□□□ -0.61
UPF1-206ENST00000598471 ZNF705AQ6ZN79 300 aaPredicted RBP11.23□□□□□ -0.61
UPF1-206ENST00000598471 TIMM8BQ9Y5J9 83 aaPredicted RBP11.23□□□□□ -0.61
UPF1-206ENST00000598471 TGIF2-C20orf24A0A0A6YYL0 155 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 A0A1B0GW15 77 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 SNAI2O43623 268 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 SPINK4O60575 86 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 S100A8P05109 93 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 FRMD6-AS1P0C7T7 363 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 RRN3P1Q2M238 152 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 COX19Q49B96 90 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 WDR73Q6P4I2 378 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 ZNF493Q6ZR52 646 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 Q6ZWC4 215 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 ZNF575Q86XF7 245 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 FAM210BQ96KR6 192 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 YPEL4Q96NS1 127 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 RCHY1Q96PM5 261 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 SSBP4Q9BWG4 385 aaPredicted RBP11.22□□□□□ -0.61
UPF1-206ENST00000598471 TP53TG3Q9ULZ0 132 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 PHLDA3Q9Y5J5 127 aa11.22□□□□□ -0.61
UPF1-206ENST00000598471 PRB2P02812 416 aaPredicted RBP11.21□□□□□ -0.61
UPF1-206ENST00000598471 DEFB135Q30KP9 77 aa11.21□□□□□ -0.61
UPF1-206ENST00000598471 SPANXN1Q5VSR9 72 aa11.21□□□□□ -0.61
UPF1-206ENST00000598471 MRPL54Q6P161 138 aaKnown RBP11.21□□□□□ -0.61
UPF1-206ENST00000598471 RASL11AQ6T310 242 aa11.21□□□□□ -0.61
UPF1-206ENST00000598471 TMEM263Q8WUH6 116 aaKnown RBP11.21□□□□□ -0.61
UPF1-206ENST00000598471 C16orf74Q96GX8 76 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 207.6 ms