RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 BATF3Q9NR55 127 aa9.25□□□□□ -0.93
TRIM28-211ENST00000597968 MSRB1Q9NZV6 116 aa9.25□□□□□ -0.93
TRIM28-211ENST00000597968 A0A087WTM6 91 aa9.24□□□□□ -0.93
TRIM28-211ENST00000597968 A0A1W2PPV4 95 aa9.24□□□□□ -0.93
TRIM28-211ENST00000597968 PGPA6NDG6 321 aa9.24□□□□□ -0.93
TRIM28-211ENST00000597968 EPM2AB3EWF7 344 aa9.24□□□□□ -0.93
TRIM28-211ENST00000597968 HMGB3O15347 200 aaKnown RBP9.24□□□□□ -0.93
TRIM28-211ENST00000597968 GYPEP15421 78 aa9.24□□□□□ -0.93
TRIM28-211ENST00000597968 RAB2AP61019 212 aa9.24□□□□□ -0.93
TRIM28-211ENST00000597968 OR4C5Q8NGB2 326 aa9.24□□□□□ -0.93
TRIM28-211ENST00000597968 IGHV3-16A0A0C4DH30 117 aa9.23□□□□□ -0.93
TRIM28-211ENST00000597968 SFTA3P0C7M3 94 aa9.23□□□□□ -0.93
TRIM28-211ENST00000597968 Q5BKY6 102 aa9.23□□□□□ -0.93
TRIM28-211ENST00000597968 NDFIP1Q9BT67 221 aa9.23□□□□□ -0.93
TRIM28-211ENST00000597968 SH3BGRL3Q9H299 93 aa9.23□□□□□ -0.93
TRIM28-211ENST00000597968 SDF2L1Q9HCN8 221 aa9.23□□□□□ -0.93
TRIM28-211ENST00000597968 RPH3ALQ9UNE2 315 aa9.23□□□□□ -0.93
TRIM28-211ENST00000597968 FBLL1A6NHQ2 334 aaKnown RBP9.22□□□□□ -0.93
TRIM28-211ENST00000597968 PFN1P07737 140 aaKnown RBP9.22□□□□□ -0.93
TRIM28-211ENST00000597968 PTH2Q96A98 100 aa9.22□□□□□ -0.93
TRIM28-211ENST00000597968 TREM1Q9NP99 234 aa9.22□□□□□ -0.93
TRIM28-211ENST00000597968 K7EQM0 130 aa9.21□□□□□ -0.94
TRIM28-211ENST00000597968 CRYGDP07320 174 aa9.21□□□□□ -0.94
TRIM28-211ENST00000597968 GATA1P15976 413 aaPredicted RBP9.21□□□□□ -0.94
TRIM28-211ENST00000597968 LINC01556Q5JQF7 62 aa9.21□□□□□ -0.94
TRIM28-211ENST00000597968 WFDC10BQ8IUB3 73 aa9.21□□□□□ -0.94
TRIM28-211ENST00000597968 OR10G9Q8NGN4 311 aa9.21□□□□□ -0.94
TRIM28-211ENST00000597968 OR10G7Q8NGN6 311 aa9.21□□□□□ -0.94
TRIM28-211ENST00000597968 NTN5Q8WTR8 489 aaPredicted RBP9.21□□□□□ -0.94
TRIM28-211ENST00000597968 ASB13Q8WXK3 278 aa9.21□□□□□ -0.94
TRIM28-211ENST00000597968 MED28Q9H204 178 aa9.21□□□□□ -0.94
TRIM28-211ENST00000597968 FAT1Q14517 4588 aa9.21□□□□□ -0.94
TRIM28-211ENST00000597968 IGHV3-38A0A0C4DH36 116 aa9.2□□□□□ -0.94
TRIM28-211ENST00000597968 TRBV6-4A0A1B0GX49 114 aa9.2□□□□□ -0.94
TRIM28-211ENST00000597968 TAAR5O14804 337 aa9.2□□□□□ -0.94
TRIM28-211ENST00000597968 MBP02144 154 aa9.2□□□□□ -0.94
TRIM28-211ENST00000597968 TYMSP04818 313 aa9.2□□□□□ -0.94
TRIM28-211ENST00000597968 GNG5P63218 68 aa9.2□□□□□ -0.94
TRIM28-211ENST00000597968 GOLT1AQ6ZVE7 132 aa9.2□□□□□ -0.94
TRIM28-211ENST00000597968 HSD17B11Q8NBQ5 300 aa9.2□□□□□ -0.94
TRIM28-211ENST00000597968 OR2G3Q8NGZ4 309 aa9.2□□□□□ -0.94
TRIM28-211ENST00000597968 SUN5Q8TC36 379 aa9.2□□□□□ -0.94
TRIM28-211ENST00000597968 FRZBQ92765 325 aa9.2□□□□□ -0.94
TRIM28-211ENST00000597968 PRADC1Q9BSG0 188 aa9.2□□□□□ -0.94
TRIM28-211ENST00000597968 NAGKQ9UJ70 344 aa9.2□□□□□ -0.94
TRIM28-211ENST00000597968 TRAV8-1A0A0A6YYK1 113 aa9.19□□□□□ -0.94
TRIM28-211ENST00000597968 TRAV8-6A0A0B4J262 113 aa9.19□□□□□ -0.94
TRIM28-211ENST00000597968 GNRH2O43555 120 aa9.19□□□□□ -0.94
TRIM28-211ENST00000597968 STAG3L2P0CL84 134 aa9.19□□□□□ -0.94
TRIM28-211ENST00000597968 STAG3L3P0CL85 134 aa9.19□□□□□ -0.94
TRIM28-211ENST00000597968 XGP55808 180 aa9.19□□□□□ -0.94
TRIM28-211ENST00000597968 SERF2P84101 59 aa9.19□□□□□ -0.94
TRIM28-211ENST00000597968 RHOHQ15669 191 aa9.19□□□□□ -0.94
TRIM28-211ENST00000597968 PIK3CD-AS1Q5SR53 167 aa9.19□□□□□ -0.94
TRIM28-211ENST00000597968 C5orf17Q8NAS9 161 aa9.19□□□□□ -0.94
TRIM28-211ENST00000597968 TVP23CQ96ET8 276 aa9.19□□□□□ -0.94
TRIM28-211ENST00000597968 SGK494Q96LW2 274 aa9.19□□□□□ -0.94
TRIM28-211ENST00000597968 PSMG3Q9BT73 122 aaPredicted RBP9.19□□□□□ -0.94
TRIM28-211ENST00000597968 TNFRSF18Q9Y5U5 241 aa9.19□□□□□ -0.94
TRIM28-211ENST00000597968 IBA57-AS1B1ANH7 110 aa9.18□□□□□ -0.94
TRIM28-211ENST00000597968 PTTG1O95997 202 aa9.18□□□□□ -0.94
TRIM28-211ENST00000597968 ARL14EPLP0DKL9 152 aa9.18□□□□□ -0.94
TRIM28-211ENST00000597968 GCSHP23434 173 aa9.18□□□□□ -0.94
TRIM28-211ENST00000597968 CDC34P49427 236 aaPredicted RBP9.18□□□□□ -0.94
TRIM28-211ENST00000597968 PPT1P50897 306 aa9.18□□□□□ -0.94
TRIM28-211ENST00000597968 ZNF876PQ49A33 203 aa9.18□□□□□ -0.94
TRIM28-211ENST00000597968 ZFP69Q49AA0 526 aa9.18□□□□□ -0.94
TRIM28-211ENST00000597968 NHLRC2Q8NBF2 726 aa9.18□□□□□ -0.94
TRIM28-211ENST00000597968 HERC1Q15751 4861 aa9.17□□□□□ -0.94
TRIM28-211ENST00000597968 F6UZH7 168 aa9.17□□□□□ -0.94
TRIM28-211ENST00000597968 RS1O15537 224 aa9.17□□□□□ -0.94
TRIM28-211ENST00000597968 TCRAP04437 139 aa9.17□□□□□ -0.94
TRIM28-211ENST00000597968 MGST1P10620 155 aaKnown RBP9.17□□□□□ -0.94
TRIM28-211ENST00000597968 ATP6V0CP27449 155 aa9.17□□□□□ -0.94
TRIM28-211ENST00000597968 LAGE3Q14657 143 aa9.17□□□□□ -0.94
TRIM28-211ENST00000597968 SAPCD1Q5SSQ6 148 aa9.17□□□□□ -0.94
TRIM28-211ENST00000597968 AQP10Q96PS8 301 aa9.17□□□□□ -0.94
TRIM28-211ENST00000597968 TMEM70Q9BUB7 260 aa9.17□□□□□ -0.94
TRIM28-211ENST00000597968 TMEM167BQ9NRX6 74 aa9.17□□□□□ -0.94
TRIM28-211ENST00000597968 PSCAO43653 123 aa9.16□□□□□ -0.94
TRIM28-211ENST00000597968 SMUG1Q53HV7 270 aa9.16□□□□□ -0.94
TRIM28-211ENST00000597968 LELP1Q5T871 98 aa9.16□□□□□ -0.94
TRIM28-211ENST00000597968 CFAP126Q5VTH2 177 aa9.16□□□□□ -0.94
TRIM28-211ENST00000597968 SLC25A29Q8N8R3 303 aa9.16□□□□□ -0.94
TRIM28-211ENST00000597968 RAB24Q969Q5 203 aa9.16□□□□□ -0.94
TRIM28-211ENST00000597968 C9orf85Q96MD7 179 aa9.16□□□□□ -0.94
TRIM28-211ENST00000597968 C1QBP02746 253 aa9.15□□□□□ -0.94
TRIM28-211ENST00000597968 INAFM2P0DMQ5 153 aa9.15□□□□□ -0.94
TRIM28-211ENST00000597968 GCHFRP30047 84 aa9.15□□□□□ -0.94
TRIM28-211ENST00000597968 KRTAP10-1P60331 282 aa9.15□□□□□ -0.94
TRIM28-211ENST00000597968 ZFP2Q6ZN57 461 aa9.15□□□□□ -0.94
TRIM28-211ENST00000597968 CYB561D1Q8N8Q1 229 aa9.15□□□□□ -0.94
TRIM28-211ENST00000597968 TMEM75Q8N9X5 138 aa9.15□□□□□ -0.94
TRIM28-211ENST00000597968 TNFSF18Q9UNG2 199 aa9.15□□□□□ -0.94
TRIM28-211ENST00000597968 A0A1W2PRE2 83 aa9.14□□□□□ -0.95
TRIM28-211ENST00000597968 LRCOL1A6NCL2 159 aa9.14□□□□□ -0.95
TRIM28-211ENST00000597968 CXorf1O96002 111 aa9.14□□□□□ -0.95
TRIM28-211ENST00000597968 GCGP01275 180 aa9.14□□□□□ -0.95
TRIM28-211ENST00000597968 FLI1Q01543 452 aaPredicted RBP9.14□□□□□ -0.95
TRIM28-211ENST00000597968 OR10J3Q5JRS4 329 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms