RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SDF2L1Q9HCN8 221 aa10.61□□□□□ -0.71
UPF1-202ENST00000594243 MANBALQ9NQG1 85 aa10.61□□□□□ -0.71
UPF1-202ENST00000594243 TRGV2A0A075B6R0 118 aa10.6□□□□□ -0.71
UPF1-202ENST00000594243 TRGV1A0A0A0MS02 117 aa10.6□□□□□ -0.71
UPF1-202ENST00000594243 S100A9P06702 114 aaKnown RBP10.6□□□□□ -0.71
UPF1-202ENST00000594243 ZNF80P51504 273 aaPredicted RBP10.6□□□□□ -0.71
UPF1-202ENST00000594243 TMEM183BQ1AE95 376 aa10.6□□□□□ -0.71
UPF1-202ENST00000594243 TMEM88Q6PEY1 159 aa10.6□□□□□ -0.71
UPF1-202ENST00000594243 Q6ZTI0 123 aa10.6□□□□□ -0.71
UPF1-202ENST00000594243 TMEM183AQ8IXX5 376 aa10.6□□□□□ -0.71
UPF1-202ENST00000594243 C18orf15Q96N68 181 aa10.6□□□□□ -0.71
UPF1-202ENST00000594243 SPXQ9BT56 116 aa10.6□□□□□ -0.71
UPF1-202ENST00000594243 MDFICQ9P1T7 246 aa10.6□□□□□ -0.71
UPF1-202ENST00000594243 TRBV6-1A0A0K0K1D8 114 aa10.59□□□□□ -0.71
UPF1-202ENST00000594243 FABP5P3A8MUU1 101 aa10.59□□□□□ -0.71
UPF1-202ENST00000594243 GNRH2O43555 120 aa10.59□□□□□ -0.71
UPF1-202ENST00000594243 CCL20P78556 96 aa10.59□□□□□ -0.71
UPF1-202ENST00000594243 C15orf53Q8NAA6 179 aa10.59□□□□□ -0.71
UPF1-202ENST00000594243 TXNDC17Q9BRA2 123 aa10.59□□□□□ -0.71
UPF1-202ENST00000594243 GNG13Q9P2W3 67 aa10.59□□□□□ -0.71
UPF1-202ENST00000594243 PLECQ15149 4684 aaKnown RBP10.58□□□□□ -0.72
UPF1-202ENST00000594243 P0DMU3 169 aa10.58□□□□□ -0.72
UPF1-202ENST00000594243 FAM231AP0DMU4 169 aa10.58□□□□□ -0.72
UPF1-202ENST00000594243 FAM231CP0DMU5 169 aa10.58□□□□□ -0.72
UPF1-202ENST00000594243 AKR1C3P42330 323 aa10.58□□□□□ -0.72
UPF1-202ENST00000594243 OR5I1Q13606 314 aa10.58□□□□□ -0.72
UPF1-202ENST00000594243 Q86TA4 180 aa10.58□□□□□ -0.72
UPF1-202ENST00000594243 EPPK1P58107 5090 aaKnown RBP10.57□□□□□ -0.72
UPF1-202ENST00000594243 IGHV3-16A0A0C4DH30 117 aa10.57□□□□□ -0.72
UPF1-202ENST00000594243 IFNA1P01562 189 aa10.57□□□□□ -0.72
UPF1-202ENST00000594243 TYMSP04818 313 aa10.57□□□□□ -0.72
UPF1-202ENST00000594243 NKX2-5P52952 324 aaPredicted RBP10.57□□□□□ -0.72
UPF1-202ENST00000594243 COX8CQ7Z4L0 72 aa10.57□□□□□ -0.72
UPF1-202ENST00000594243 MRPL16Q9NX20 251 aaKnown RBP10.57□□□□□ -0.72
UPF1-202ENST00000594243 LTAP01374 205 aa10.56□□□□□ -0.72
UPF1-202ENST00000594243 BLOC1S1P78537 153 aa10.56□□□□□ -0.72
UPF1-202ENST00000594243 ALKAL2Q6UX46 152 aa10.56□□□□□ -0.72
UPF1-202ENST00000594243 RASL10AQ92737 203 aa10.56□□□□□ -0.72
UPF1-202ENST00000594243 SCO2A0A1W2PP80 73 aa10.55□□□□□ -0.72
UPF1-202ENST00000594243 HOXA5P20719 270 aa10.55□□□□□ -0.72
UPF1-202ENST00000594243 C11orf21Q9P2W6 132 aa10.55□□□□□ -0.72
UPF1-202ENST00000594243 M0R2P5 195 aa10.54□□□□□ -0.72
UPF1-202ENST00000594243 TAGLN2P37802 199 aaKnown RBP10.54□□□□□ -0.72
UPF1-202ENST00000594243 FAM162BQ5T6X4 162 aa10.54□□□□□ -0.72
UPF1-202ENST00000594243 ZC2HC1AQ96GY0 325 aa10.54□□□□□ -0.72
UPF1-202ENST00000594243 HYDINQ4G0P3 5121 aa10.54□□□□□ -0.72
UPF1-202ENST00000594243 TRAV26-1A0A087WT03 109 aa10.53□□□□□ -0.72
UPF1-202ENST00000594243 H3BNG1 76 aa10.53□□□□□ -0.72
UPF1-202ENST00000594243 PDE6DO43924 150 aa10.53□□□□□ -0.72
UPF1-202ENST00000594243 NUDT3O95989 172 aa10.53□□□□□ -0.72
UPF1-202ENST00000594243 ORM1P02763 201 aa10.53□□□□□ -0.72
UPF1-202ENST00000594243 CRIP1P50238 77 aa10.53□□□□□ -0.72
UPF1-202ENST00000594243 MEF2BQ02080 365 aaPredicted RBP10.53□□□□□ -0.72
UPF1-202ENST00000594243 SLAQ13239 276 aa10.53□□□□□ -0.72
UPF1-202ENST00000594243 RNF212Q495C1 297 aa10.53□□□□□ -0.72
UPF1-202ENST00000594243 BAGE2Q86Y30 109 aa10.53□□□□□ -0.72
UPF1-202ENST00000594243 POM121L12Q8N7R1 296 aa10.53□□□□□ -0.72
UPF1-202ENST00000594243 VAX2Q9UIW0 290 aa10.53□□□□□ -0.72
UPF1-202ENST00000594243 BOLA1Q9Y3E2 137 aa10.53□□□□□ -0.72
UPF1-202ENST00000594243 BIRC6Q9NR09 4857 aa10.52□□□□□ -0.72
UPF1-202ENST00000594243 IGKV3D-20A0A0C4DH25 116 aa10.52□□□□□ -0.73
UPF1-202ENST00000594243 S100A4P26447 101 aaKnown RBP10.52□□□□□ -0.73
UPF1-202ENST00000594243 ZNF674Q2M3X9 581 aa10.52□□□□□ -0.73
UPF1-202ENST00000594243 UBE2DNLQ8IWF7 75 aa10.52□□□□□ -0.73
UPF1-202ENST00000594243 C11orf52Q96A22 123 aa10.52□□□□□ -0.73
UPF1-202ENST00000594243 A0A0J9YY99 117 aa10.51□□□□□ -0.73
UPF1-202ENST00000594243 B4DEV8 164 aa10.51□□□□□ -0.73
UPF1-202ENST00000594243 SH2D1AO60880 128 aa10.51□□□□□ -0.73
UPF1-202ENST00000594243 IGHV3-53P01767 116 aa10.51□□□□□ -0.73
UPF1-202ENST00000594243 BCL2P10415 239 aa10.51□□□□□ -0.73
UPF1-202ENST00000594243 RPL35P42766 123 aaKnown RBP10.51□□□□□ -0.73
UPF1-202ENST00000594243 ZNF876PQ49A33 203 aa10.51□□□□□ -0.73
UPF1-202ENST00000594243 MLST8Q9BVC4 326 aa10.51□□□□□ -0.73
UPF1-202ENST00000594243 TRGV4A0A0C4DH28 118 aa10.5□□□□□ -0.73
UPF1-202ENST00000594243 KRBOX1C9JBD0 128 aa10.5□□□□□ -0.73
UPF1-202ENST00000594243 RNASE3P12724 160 aaKnown RBP10.5□□□□□ -0.73
UPF1-202ENST00000594243 ASIPP42127 132 aa10.5□□□□□ -0.73
UPF1-202ENST00000594243 NHLRC2Q8NBF2 726 aa10.5□□□□□ -0.73
UPF1-202ENST00000594243 OR4C5Q8NGB2 326 aa10.5□□□□□ -0.73
UPF1-202ENST00000594243 LYPD6BQ8NI32 183 aa10.5□□□□□ -0.73
UPF1-202ENST00000594243 PTH2Q96A98 100 aa10.5□□□□□ -0.73
UPF1-202ENST00000594243 C9orf85Q96MD7 179 aa10.5□□□□□ -0.73
UPF1-202ENST00000594243 PRO0255Q9UI72 69 aa10.5□□□□□ -0.73
UPF1-202ENST00000594243 HHLA3Q9XRX5 114 aa10.5□□□□□ -0.73
UPF1-202ENST00000594243 ALMS1Q8TCU4 4167 aa10.49□□□□□ -0.73
UPF1-202ENST00000594243 TRAV4A0A0B4J268 109 aa10.49□□□□□ -0.73
UPF1-202ENST00000594243 C9JCJ5 164 aa10.49□□□□□ -0.73
UPF1-202ENST00000594243 CIDEAO60543 219 aa10.49□□□□□ -0.73
UPF1-202ENST00000594243 CCL18P55774 89 aa10.49□□□□□ -0.73
UPF1-202ENST00000594243 FHL2Q14192 279 aa10.49□□□□□ -0.73
UPF1-202ENST00000594243 DNLZQ5SXM8 178 aa10.49□□□□□ -0.73
UPF1-202ENST00000594243 ZNF479Q96JC4 524 aa10.49□□□□□ -0.73
UPF1-202ENST00000594243 MED9Q9NWA0 146 aa10.49□□□□□ -0.73
UPF1-202ENST00000594243 M0R036 132 aa10.48□□□□□ -0.73
UPF1-202ENST00000594243 PAX4O43316 350 aa10.48□□□□□ -0.73
UPF1-202ENST00000594243 CRYBA4P53673 196 aa10.48□□□□□ -0.73
UPF1-202ENST00000594243 FAM3BP58499 235 aaPredicted RBP10.48□□□□□ -0.73
UPF1-202ENST00000594243 LINC01559Q495D7 138 aa10.48□□□□□ -0.73
UPF1-202ENST00000594243 VSIG2Q96IQ7 327 aa10.48□□□□□ -0.73
UPF1-202ENST00000594243 DERL1Q9BUN8 251 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms