RNA–Protein interactions for RNA: ENST00000589797.5

RETREG3-208, Transcript of reticulophagy regulator family member 3, human

TSL 2

Gene RETREG3, Length 4,149 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RETREG3-208	ENST00000589797	IGHV1-24	A0A0C4DH33	117 aa		11.3	□□□□□ -0.6
RETREG3-208	ENST00000589797	GAGE10	A6NGK3	116 aa		11.3	□□□□□ -0.6
RETREG3-208	ENST00000589797	STH	Q8IWL8	128 aa		11.3	□□□□□ -0.6
RETREG3-208	ENST00000589797	SNHG12	Q9BXW3	62 aa		11.3	□□□□□ -0.6
RETREG3-208	ENST00000589797	NXT2	Q9NPJ8	142 aa	Known RBP	11.3	□□□□□ -0.6
RETREG3-208	ENST00000589797	RPL35A	P18077	110 aa	Known RBP	11.3	□□□□□ -0.6
RETREG3-208	ENST00000589797	PSMB2	P49721	201 aa		11.3	□□□□□ -0.6
RETREG3-208	ENST00000589797	TMEM8B	A6NDV4	472 aa		11.3	□□□□□ -0.6
RETREG3-208	ENST00000589797	PPBP	P02775	128 aa		11.3	□□□□□ -0.6
RETREG3-208	ENST00000589797	C10orf99	Q6UWK7	81 aa		11.3	□□□□□ -0.6
RETREG3-208	ENST00000589797	KLF2	Q9Y5W3	355 aa	Predicted RBP	11.3	□□□□□ -0.6
RETREG3-208	ENST00000589797	SRSF1	Q07955	248 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
RETREG3-208	ENST00000589797	ST20	Q9HBF5	79 aa		11.29	□□□□□ -0.6
RETREG3-208	ENST00000589797	ATP5L	O75964	103 aa		11.29	□□□□□ -0.6
RETREG3-208	ENST00000589797	IGLL1	P15814	213 aa		11.29	□□□□□ -0.6
RETREG3-208	ENST00000589797	C11orf71	Q6IPW1	123 aa		11.29	□□□□□ -0.6
RETREG3-208	ENST00000589797	PET117	Q6UWS5	81 aa		11.29	□□□□□ -0.6
RETREG3-208	ENST00000589797		Q6ZVH6	145 aa		11.29	□□□□□ -0.6
RETREG3-208	ENST00000589797	SIGLEC8	Q9NYZ4	499 aa		11.29	□□□□□ -0.6
RETREG3-208	ENST00000589797	PEMT	Q9UBM1	199 aa		11.29	□□□□□ -0.6
RETREG3-208	ENST00000589797		A0A0U1RRA0	63 aa		11.28	□□□□□ -0.6
RETREG3-208	ENST00000589797	ZNF876P	Q49A33	203 aa		11.28	□□□□□ -0.6
RETREG3-208	ENST00000589797	AMMECR1L	Q6DCA0	310 aa		11.28	□□□□□ -0.6
RETREG3-208	ENST00000589797	TRGV2	A0A075B6R0	118 aa		11.28	□□□□□ -0.6
RETREG3-208	ENST00000589797		Q6ZS46	218 aa		11.28	□□□□□ -0.6
RETREG3-208	ENST00000589797	OR2K2	Q8NGT1	345 aa		11.28	□□□□□ -0.6
RETREG3-208	ENST00000589797	GFRA4	Q9GZZ7	299 aa		11.28	□□□□□ -0.6
RETREG3-208	ENST00000589797	USP24	Q9UPU5	2620 aa		11.28	□□□□□ -0.6
RETREG3-208	ENST00000589797	IGHV3-16	A0A0C4DH30	117 aa		11.28	□□□□□ -0.6
RETREG3-208	ENST00000589797	ZC2HC1B	Q5TFG8	222 aa		11.28	□□□□□ -0.6
RETREG3-208	ENST00000589797	CSTL1	Q9H114	145 aa		11.28	□□□□□ -0.6
RETREG3-208	ENST00000589797	LAMA5	O15230	3695 aa		11.27	□□□□□ -0.6
RETREG3-208	ENST00000589797	ODF3B	A8MYP8	253 aa		11.27	□□□□□ -0.6
RETREG3-208	ENST00000589797	NPIPB6	E9PJ23	425 aa		11.27	□□□□□ -0.6
RETREG3-208	ENST00000589797	INS-IGF2	F8WCM5	200 aa		11.27	□□□□□ -0.6
RETREG3-208	ENST00000589797	LY6L	H3BQJ8	138 aa		11.27	□□□□□ -0.6
RETREG3-208	ENST00000589797	NDUFA4	O00483	81 aa		11.27	□□□□□ -0.6
RETREG3-208	ENST00000589797	CRYGB	P07316	175 aa		11.27	□□□□□ -0.6
RETREG3-208	ENST00000589797	PLP1	P60201	277 aa		11.27	□□□□□ -0.6
RETREG3-208	ENST00000589797	APOM	O95445	188 aa		11.27	□□□□□ -0.61
RETREG3-208	ENST00000589797	IGLC2	P0DOY2	106 aa		11.27	□□□□□ -0.61
RETREG3-208	ENST00000589797	HTN3	P15516	51 aa		11.27	□□□□□ -0.61
RETREG3-208	ENST00000589797	LBH	Q53QV2	105 aa	Predicted RBP	11.27	□□□□□ -0.61
RETREG3-208	ENST00000589797	CT83	Q5H943	113 aa		11.27	□□□□□ -0.61
RETREG3-208	ENST00000589797	GDF5OS	Q5U4N7	250 aa		11.27	□□□□□ -0.61
RETREG3-208	ENST00000589797	FLNC	Q14315	2725 aa		11.26	□□□□□ -0.61
RETREG3-208	ENST00000589797	LRBA	P50851	2863 aa		11.26	□□□□□ -0.61
RETREG3-208	ENST00000589797	NUTF2	P61970	127 aa	Known RBP	11.26	□□□□□ -0.61
RETREG3-208	ENST00000589797	RAI1	Q7Z5J4	1906 aa	Predicted RBP	11.26	□□□□□ -0.61
RETREG3-208	ENST00000589797	TNFRSF13B	O14836	293 aa	Predicted RBP	11.26	□□□□□ -0.61
RETREG3-208	ENST00000589797	ZNF80	P51504	273 aa	Predicted RBP	11.26	□□□□□ -0.61
RETREG3-208	ENST00000589797	LAGE3	Q14657	143 aa		11.26	□□□□□ -0.61
RETREG3-208	ENST00000589797	PHLDA1	Q8WV24	401 aa	Predicted RBP	11.26	□□□□□ -0.61
RETREG3-208	ENST00000589797	CCDC140	Q96MF4	163 aa		11.26	□□□□□ -0.61
RETREG3-208	ENST00000589797		H3BUT2	72 aa		11.26	□□□□□ -0.61
RETREG3-208	ENST00000589797	SMIM12	Q96EX1	92 aa		11.26	□□□□□ -0.61
RETREG3-208	ENST00000589797	NHP2	Q9NX24	153 aa	Known RBP	11.26	□□□□□ -0.61
RETREG3-208	ENST00000589797	SLURP1	P55000	103 aa		11.25	□□□□□ -0.61
RETREG3-208	ENST00000589797	ZNF124	Q15973	351 aa		11.25	□□□□□ -0.61
RETREG3-208	ENST00000589797	COA6	Q5JTJ3	125 aa	Known RBP	11.25	□□□□□ -0.61
RETREG3-208	ENST00000589797	YPEL4	Q96NS1	127 aa		11.25	□□□□□ -0.61
RETREG3-208	ENST00000589797	MS4A6A	Q9H2W1	248 aa		11.25	□□□□□ -0.61
RETREG3-208	ENST00000589797	WI2-2373I1.2	A0A1W2PRP0	233 aa		11.25	□□□□□ -0.61
RETREG3-208	ENST00000589797	IGHV7-4-1	A0A0J9YVY3	117 aa		11.25	□□□□□ -0.61
RETREG3-208	ENST00000589797	IGF1	P05019	195 aa		11.25	□□□□□ -0.61
RETREG3-208	ENST00000589797	GATA3	P23771	443 aa		11.25	□□□□□ -0.61
RETREG3-208	ENST00000589797	FAM231B	A6NCW3	169 aa		11.24	□□□□□ -0.61
RETREG3-208	ENST00000589797	DPH3P1	Q9H4G8	78 aa		11.24	□□□□□ -0.61
RETREG3-208	ENST00000589797	TNRC6B	Q9UPQ9	1833 aa	Known RBP	11.24	□□□□□ -0.61
RETREG3-208	ENST00000589797	DPM2	O94777	84 aa		11.24	□□□□□ -0.61
RETREG3-208	ENST00000589797	HOXD3	P31249	432 aa	Predicted RBP	11.24	□□□□□ -0.61
RETREG3-208	ENST00000589797	GEMIN7	Q9H840	131 aa	Known RBP	11.24	□□□□□ -0.61
RETREG3-208	ENST00000589797	SMPX	Q9UHP9	88 aa		11.24	□□□□□ -0.61
RETREG3-208	ENST00000589797	DUSP14	O95147	198 aa	Known RBP	11.24	□□□□□ -0.61
RETREG3-208	ENST00000589797	KLF12	Q9Y4X4	402 aa		11.24	□□□□□ -0.61
RETREG3-208	ENST00000589797	CFHR3	Q02985	330 aa		11.24	□□□□□ -0.61
RETREG3-208	ENST00000589797	CYSLTR1	Q9Y271	337 aa		11.24	□□□□□ -0.61
RETREG3-208	ENST00000589797	TRGV1	A0A0A0MS02	117 aa		11.23	□□□□□ -0.61
RETREG3-208	ENST00000589797	IGKC	P01834	107 aa		11.23	□□□□□ -0.61
RETREG3-208	ENST00000589797	IGLC3	P0DOY3	106 aa		11.23	□□□□□ -0.61
RETREG3-208	ENST00000589797	LGALS3	P17931	250 aa	Known RBP	11.23	□□□□□ -0.61
RETREG3-208	ENST00000589797	GTF2H5	Q6ZYL4	71 aa		11.23	□□□□□ -0.61
RETREG3-208	ENST00000589797	TMEM262	E9PQX1	116 aa		11.23	□□□□□ -0.61
RETREG3-208	ENST00000589797	SUMO2	P61956	95 aa	Known RBP	11.23	□□□□□ -0.61
RETREG3-208	ENST00000589797	APRG1	Q8IVJ8	170 aa		11.23	□□□□□ -0.61
RETREG3-208	ENST00000589797	PTPRB	P23467	1997 aa		11.22	□□□□□ -0.61
RETREG3-208	ENST00000589797	KIR3DS1	Q14943	382 aa		11.22	□□□□□ -0.61
RETREG3-208	ENST00000589797	DEFB113	Q30KQ7	82 aa		11.22	□□□□□ -0.61
RETREG3-208	ENST00000589797	DKK2	Q9UBU2	259 aa		11.22	□□□□□ -0.61
RETREG3-208	ENST00000589797	AVP	P01185	164 aa		11.22	□□□□□ -0.61
RETREG3-208	ENST00000589797	VCX2	Q9H322	139 aa		11.22	□□□□□ -0.61
RETREG3-208	ENST00000589797	TP73-AS1	Q9UF72	201 aa		11.22	□□□□□ -0.61
RETREG3-208	ENST00000589797	VPREB3	Q9UKI3	123 aa		11.22	□□□□□ -0.61
RETREG3-208	ENST00000589797	TOMM7	Q9P0U1	55 aa		11.21	□□□□□ -0.61
RETREG3-208	ENST00000589797	CHTOP	Q9Y3Y2	248 aa	Known RBP	11.21	□□□□□ -0.61
RETREG3-208	ENST00000589797		J3QKU1	62 aa		11.21	□□□□□ -0.62
RETREG3-208	ENST00000589797	UBE2L6	O14933	153 aa		11.21	□□□□□ -0.62
RETREG3-208	ENST00000589797	FABP2	P12104	132 aa		11.21	□□□□□ -0.62
RETREG3-208	ENST00000589797	FLNA	P21333	2647 aa	Known RBP	11.2	□□□□□ -0.62
RETREG3-208	ENST00000589797	IGHV3-38	A0A0C4DH36	116 aa		11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms