RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 FAM231AP0DMU4 169 aa9.19□□□□□ -0.94
CLK3-224ENST00000568605 FAM231CP0DMU5 169 aa9.19□□□□□ -0.94
CLK3-224ENST00000568605 TMEM183BQ1AE95 376 aa9.19□□□□□ -0.94
CLK3-224ENST00000568605 TMEM88Q6PEY1 159 aa9.19□□□□□ -0.94
CLK3-224ENST00000568605 TMEM183AQ8IXX5 376 aa9.19□□□□□ -0.94
CLK3-224ENST00000568605 C8orf49Q96NF6 230 aa9.19□□□□□ -0.94
CLK3-224ENST00000568605 SPXQ9BT56 116 aa9.19□□□□□ -0.94
CLK3-224ENST00000568605 KLF12Q9Y4X4 402 aa9.19□□□□□ -0.94
CLK3-224ENST00000568605 TRAV1-1A0A0B4J248 108 aa9.18□□□□□ -0.94
CLK3-224ENST00000568605 SPINK4O60575 86 aa9.18□□□□□ -0.94
CLK3-224ENST00000568605 S100A9P06702 114 aaKnown RBP9.18□□□□□ -0.94
CLK3-224ENST00000568605 Q6ZTI0 123 aa9.18□□□□□ -0.94
CLK3-224ENST00000568605 TVP23CQ96ET8 276 aa9.18□□□□□ -0.94
CLK3-224ENST00000568605 C18orf15Q96N68 181 aa9.18□□□□□ -0.94
CLK3-224ENST00000568605 TXNDC17Q9BRA2 123 aa9.18□□□□□ -0.94
CLK3-224ENST00000568605 TP53TG3Q9ULZ0 132 aa9.18□□□□□ -0.94
CLK3-224ENST00000568605 ZFP30Q9Y2G7 519 aa9.18□□□□□ -0.94
CLK3-224ENST00000568605 TRAV34A0A0B4J273 112 aa9.17□□□□□ -0.94
CLK3-224ENST00000568605 A0A1B0GVG6 124 aa9.17□□□□□ -0.94
CLK3-224ENST00000568605 TYMSP04818 313 aa9.17□□□□□ -0.94
CLK3-224ENST00000568605 Q6ZQT7 251 aa9.17□□□□□ -0.94
CLK3-224ENST00000568605 UBE2DNLQ8IWF7 75 aa9.17□□□□□ -0.94
CLK3-224ENST00000568605 TRBV6-1A0A0K0K1D8 114 aa9.16□□□□□ -0.94
CLK3-224ENST00000568605 TAGLN2P37802 199 aaKnown RBP9.16□□□□□ -0.94
CLK3-224ENST00000568605 LINC00479Q96M42 142 aa9.16□□□□□ -0.94
CLK3-224ENST00000568605 MRPL16Q9NX20 251 aaKnown RBP9.16□□□□□ -0.94
CLK3-224ENST00000568605 GNG13Q9P2W3 67 aa9.16□□□□□ -0.94
CLK3-224ENST00000568605 RYR3Q15413 4870 aa9.16□□□□□ -0.94
CLK3-224ENST00000568605 RYR2Q92736 4967 aa9.16□□□□□ -0.94
CLK3-224ENST00000568605 FABP5P3A8MUU1 101 aa9.15□□□□□ -0.94
CLK3-224ENST00000568605 OR5I1Q13606 314 aa9.15□□□□□ -0.94
CLK3-224ENST00000568605 IGHV3-16A0A0C4DH30 117 aa9.14□□□□□ -0.95
CLK3-224ENST00000568605 SCO2A0A1W2PP80 73 aa9.14□□□□□ -0.95
CLK3-224ENST00000568605 LTAP01374 205 aa9.14□□□□□ -0.95
CLK3-224ENST00000568605 ZNF80P51504 273 aaPredicted RBP9.14□□□□□ -0.95
CLK3-224ENST00000568605 MDFICQ9P1T7 246 aa9.14□□□□□ -0.95
CLK3-224ENST00000568605 H3BNG1 76 aa9.13□□□□□ -0.95
CLK3-224ENST00000568605 M0R2P5 195 aa9.13□□□□□ -0.95
CLK3-224ENST00000568605 NUDT3O95989 172 aa9.13□□□□□ -0.95
CLK3-224ENST00000568605 BLOC1S1P78537 153 aa9.13□□□□□ -0.95
CLK3-224ENST00000568605 MEF2BQ02080 365 aaPredicted RBP9.13□□□□□ -0.95
CLK3-224ENST00000568605 FAM162BQ5T6X4 162 aa9.13□□□□□ -0.95
CLK3-224ENST00000568605 ALKAL2Q6UX46 152 aa9.13□□□□□ -0.95
CLK3-224ENST00000568605 VPS13DQ5THJ4 4388 aa9.12□□□□□ -0.95
CLK3-224ENST00000568605 TRAV26-1A0A087WT03 109 aa9.12□□□□□ -0.95
CLK3-224ENST00000568605 GNRH2O43555 120 aa9.12□□□□□ -0.95
CLK3-224ENST00000568605 PDE6DO43924 150 aa9.12□□□□□ -0.95
CLK3-224ENST00000568605 BCL2P10415 239 aa9.12□□□□□ -0.95
CLK3-224ENST00000568605 S100A4P26447 101 aaKnown RBP9.12□□□□□ -0.95
CLK3-224ENST00000568605 NKX2-5P52952 324 aaPredicted RBP9.12□□□□□ -0.95
CLK3-224ENST00000568605 SLAQ13239 276 aa9.12□□□□□ -0.95
CLK3-224ENST00000568605 RNF212Q495C1 297 aa9.12□□□□□ -0.95
CLK3-224ENST00000568605 COX8CQ7Z4L0 72 aa9.12□□□□□ -0.95
CLK3-224ENST00000568605 POM121L12Q8N7R1 296 aa9.12□□□□□ -0.95
CLK3-224ENST00000568605 RASL10AQ92737 203 aa9.12□□□□□ -0.95
CLK3-224ENST00000568605 C11orf52Q96A22 123 aa9.12□□□□□ -0.95
CLK3-224ENST00000568605 ZC2HC1AQ96GY0 325 aa9.12□□□□□ -0.95
CLK3-224ENST00000568605 B4DEV8 164 aa9.11□□□□□ -0.95
CLK3-224ENST00000568605 SH2D1AO60880 128 aa9.11□□□□□ -0.95
CLK3-224ENST00000568605 ORM1P02763 201 aa9.11□□□□□ -0.95
CLK3-224ENST00000568605 HOXA5P20719 270 aa9.11□□□□□ -0.95
CLK3-224ENST00000568605 ASIPP42127 132 aa9.11□□□□□ -0.95
CLK3-224ENST00000568605 FAM3BP58499 235 aaPredicted RBP9.11□□□□□ -0.95
CLK3-224ENST00000568605 C11orf21Q9P2W6 132 aa9.11□□□□□ -0.95
CLK3-224ENST00000568605 TRAV4A0A0B4J268 109 aa9.1□□□□□ -0.95
CLK3-224ENST00000568605 TRGV4A0A0C4DH28 118 aa9.1□□□□□ -0.95
CLK3-224ENST00000568605 A0A0J9YY99 117 aa9.1□□□□□ -0.95
CLK3-224ENST00000568605 IGHV3-53P01767 116 aa9.1□□□□□ -0.95
CLK3-224ENST00000568605 RPL35P42766 123 aaKnown RBP9.1□□□□□ -0.95
CLK3-224ENST00000568605 CCL18P55774 89 aa9.1□□□□□ -0.95
CLK3-224ENST00000568605 CCL20P78556 96 aa9.1□□□□□ -0.95
CLK3-224ENST00000568605 BAGE2Q86Y30 109 aa9.1□□□□□ -0.95
CLK3-224ENST00000568605 C9orf85Q96MD7 179 aa9.1□□□□□ -0.95
CLK3-224ENST00000568605 PRO0255Q9UI72 69 aa9.1□□□□□ -0.95
CLK3-224ENST00000568605 VAX2Q9UIW0 290 aa9.1□□□□□ -0.95
CLK3-224ENST00000568605 HYDINQ4G0P3 5121 aa9.1□□□□□ -0.95
CLK3-224ENST00000568605 M0R036 132 aa9.09□□□□□ -0.95
CLK3-224ENST00000568605 ZNF674Q2M3X9 581 aa9.09□□□□□ -0.95
CLK3-224ENST00000568605 LINC01559Q495D7 138 aa9.09□□□□□ -0.95
CLK3-224ENST00000568605 ZNF876PQ49A33 203 aa9.09□□□□□ -0.95
CLK3-224ENST00000568605 NHLRC2Q8NBF2 726 aa9.09□□□□□ -0.95
CLK3-224ENST00000568605 OR4C5Q8NGB2 326 aa9.09□□□□□ -0.95
CLK3-224ENST00000568605 PCNPQ8WW12 178 aaKnown RBP9.09□□□□□ -0.95
CLK3-224ENST00000568605 SMIM12Q96EX1 92 aa9.09□□□□□ -0.95
CLK3-224ENST00000568605 DNAH6Q9C0G6 4158 aa9.08□□□□□ -0.96
CLK3-224ENST00000568605 IGKV3D-20A0A0C4DH25 116 aa9.08□□□□□ -0.96
CLK3-224ENST00000568605 C9JCJ5 164 aa9.08□□□□□ -0.96
CLK3-224ENST00000568605 H3BVH4 76 aa9.08□□□□□ -0.96
CLK3-224ENST00000568605 PAX4O43316 350 aa9.08□□□□□ -0.96
CLK3-224ENST00000568605 CIDEAO60543 219 aa9.08□□□□□ -0.96
CLK3-224ENST00000568605 SYT8Q8NBV8 401 aa9.08□□□□□ -0.96
CLK3-224ENST00000568605 PTH2Q96A98 100 aa9.08□□□□□ -0.96
CLK3-224ENST00000568605 IL36BQ9NZH7 164 aa9.08□□□□□ -0.96
CLK3-224ENST00000568605 ICOSQ9Y6W8 199 aa9.08□□□□□ -0.96
CLK3-224ENST00000568605 KRBOX1C9JBD0 128 aa9.07□□□□□ -0.96
CLK3-224ENST00000568605 RNASE3P12724 160 aaKnown RBP9.07□□□□□ -0.96
CLK3-224ENST00000568605 GNG4P50150 75 aa9.07□□□□□ -0.96
CLK3-224ENST00000568605 CENPWQ5EE01 88 aa9.07□□□□□ -0.96
CLK3-224ENST00000568605 PIK3CD-AS1Q5SR53 167 aa9.07□□□□□ -0.96
CLK3-224ENST00000568605 DNLZQ5SXM8 178 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms