RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 GAGE12FP0CL80 117 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 GAGE12GP0CL81 117 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 GAGE12IP0CL82 117 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 HTN3P15516 51 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 TCL1AP56279 114 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 DAD1P61803 113 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 EIF5AP63241 154 aaKnown RBP6.46□□□□□ -1.38
VPS35-206ENST00000565228 DAZ2Q13117 558 aaKnown RBP6.46□□□□□ -1.38
VPS35-206ENST00000565228 TDRG1Q3Y452 100 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 CST9LP1Q5W188 147 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 ZNF493Q6ZR52 646 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 COX8CQ7Z4L0 72 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 NHLRC2Q8NBF2 726 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 MRPL16Q9NX20 251 aaKnown RBP6.46□□□□□ -1.38
VPS35-206ENST00000565228 TIMM8BQ9Y5J9 83 aaPredicted RBP6.46□□□□□ -1.38
VPS35-206ENST00000565228 FAT2Q9NYQ8 4349 aa6.45□□□□□ -1.38
VPS35-206ENST00000565228 SERTM2A0A1B0GWG4 89 aa6.45□□□□□ -1.38
VPS35-206ENST00000565228 C11orf94C9JXX5 98 aa6.45□□□□□ -1.38
VPS35-206ENST00000565228 RGS13O14921 159 aa6.45□□□□□ -1.38
VPS35-206ENST00000565228 LTAP01374 205 aa6.45□□□□□ -1.38
VPS35-206ENST00000565228 IFNA7P01567 189 aa6.45□□□□□ -1.38
VPS35-206ENST00000565228 RNASE3P12724 160 aaKnown RBP6.45□□□□□ -1.38
VPS35-206ENST00000565228 TMEM183BQ1AE95 376 aa6.45□□□□□ -1.38
VPS35-206ENST00000565228 C4orf48Q5BLP8 95 aa6.45□□□□□ -1.38
VPS35-206ENST00000565228 IBA57Q5T440 356 aaKnown RBP6.45□□□□□ -1.38
VPS35-206ENST00000565228 TMEM88Q6PEY1 159 aa6.45□□□□□ -1.38
VPS35-206ENST00000565228 TMEM183AQ8IXX5 376 aa6.45□□□□□ -1.38
VPS35-206ENST00000565228 ZNF680Q8NEM1 530 aa6.45□□□□□ -1.38
VPS35-206ENST00000565228 LYPD6BQ8NI32 183 aa6.45□□□□□ -1.38
VPS35-206ENST00000565228 GNG13Q9P2W3 67 aa6.45□□□□□ -1.38
VPS35-206ENST00000565228 NAGKQ9UJ70 344 aa6.45□□□□□ -1.38
VPS35-206ENST00000565228 TRBV20OR9-2A0A075B6H5 130 aa6.44□□□□□ -1.38
VPS35-206ENST00000565228 TRBV6-1A0A0K0K1D8 114 aa6.44□□□□□ -1.38
VPS35-206ENST00000565228 HIST1H2BAQ96A08 127 aa6.44□□□□□ -1.38
VPS35-206ENST00000565228 MLST8Q9BVC4 326 aa6.44□□□□□ -1.38
VPS35-206ENST00000565228 TRGV1A0A0A0MS02 117 aa6.43□□□□□ -1.38
VPS35-206ENST00000565228 TRAV21A0A0B4J279 112 aa6.43□□□□□ -1.38
VPS35-206ENST00000565228 RAB19A4D1S5 217 aa6.43□□□□□ -1.38
VPS35-206ENST00000565228 PGPEP1LA6NFU8 196 aa6.43□□□□□ -1.38
VPS35-206ENST00000565228 SH2D1AO60880 128 aa6.43□□□□□ -1.38
VPS35-206ENST00000565228 IGHV3-53P01767 116 aa6.43□□□□□ -1.38
VPS35-206ENST00000565228 PFN1P07737 140 aaKnown RBP6.43□□□□□ -1.38
VPS35-206ENST00000565228 SFTA3P0C7M3 94 aa6.43□□□□□ -1.38
VPS35-206ENST00000565228 RAB5CP51148 216 aa6.43□□□□□ -1.38
VPS35-206ENST00000565228 C11orf52Q96A22 123 aa6.43□□□□□ -1.38
VPS35-206ENST00000565228 VSIG2Q96IQ7 327 aa6.43□□□□□ -1.38
VPS35-206ENST00000565228 C9orf85Q96MD7 179 aa6.43□□□□□ -1.38
VPS35-206ENST00000565228 KLK5Q9Y337 293 aaPredicted RBP6.43□□□□□ -1.38
VPS35-206ENST00000565228 SNURFLB1AK76 121 aa6.42□□□□□ -1.38
VPS35-206ENST00000565228 F5H768 121 aa6.42□□□□□ -1.38
VPS35-206ENST00000565228 TEX46H3BTG2 121 aa6.42□□□□□ -1.38
VPS35-206ENST00000565228 LY6G6CO95867 125 aa6.42□□□□□ -1.38
VPS35-206ENST00000565228 AKR1C3P42330 323 aa6.42□□□□□ -1.38
VPS35-206ENST00000565228 RPL19P84098 196 aaKnown RBP6.42□□□□□ -1.38
VPS35-206ENST00000565228 ZNF674Q2M3X9 581 aa6.42□□□□□ -1.38
VPS35-206ENST00000565228 SMUG1Q53HV7 270 aa6.42□□□□□ -1.38
VPS35-206ENST00000565228 LGALS9CQ6DKI2 356 aa6.42□□□□□ -1.38
VPS35-206ENST00000565228 FMC1Q96HJ9 113 aa6.42□□□□□ -1.38
VPS35-206ENST00000565228 ZNF479Q96JC4 524 aa6.42□□□□□ -1.38
VPS35-206ENST00000565228 C18orf15Q96N68 181 aa6.42□□□□□ -1.38
VPS35-206ENST00000565228 NKX6-2Q9C056 277 aaPredicted RBP6.42□□□□□ -1.38
VPS35-206ENST00000565228 A0A0J9YY99 117 aa6.41□□□□□ -1.38
VPS35-206ENST00000565228 TEX48A0A1B0GUV7 120 aa6.41□□□□□ -1.38
VPS35-206ENST00000565228 GRIFINA4D1Z8 144 aa6.41□□□□□ -1.38
VPS35-206ENST00000565228 KRBOX1C9JBD0 128 aa6.41□□□□□ -1.38
VPS35-206ENST00000565228 C9JQL5 133 aa6.41□□□□□ -1.38
VPS35-206ENST00000565228 ATP5G1P05496 136 aa6.41□□□□□ -1.38
VPS35-206ENST00000565228 BCL2P10415 239 aa6.41□□□□□ -1.38
VPS35-206ENST00000565228 LORP23490 312 aaPredicted RBP6.41□□□□□ -1.38
VPS35-206ENST00000565228 RPL35P42766 123 aaKnown RBP6.41□□□□□ -1.38
VPS35-206ENST00000565228 ZNF415Q09FC8 603 aa6.41□□□□□ -1.38
VPS35-206ENST00000565228 FHL2Q14192 279 aa6.41□□□□□ -1.38
VPS35-206ENST00000565228 SAPCD1Q5SSQ6 148 aa6.41□□□□□ -1.38
VPS35-206ENST00000565228 EIF5AL1Q6IS14 154 aaKnown RBP6.41□□□□□ -1.38
VPS35-206ENST00000565228 FAM159AQ6UWV7 190 aa6.41□□□□□ -1.38
VPS35-206ENST00000565228 RASL10AQ92737 203 aa6.41□□□□□ -1.38
VPS35-206ENST00000565228 JPT2Q9H910 190 aa6.41□□□□□ -1.38
VPS35-206ENST00000565228 MANBALQ9NQG1 85 aa6.41□□□□□ -1.38
VPS35-206ENST00000565228 ABCA13Q86UQ4 5058 aa6.4□□□□□ -1.38
VPS35-206ENST00000565228 TRAV26-1A0A087WT03 109 aa6.4□□□□□ -1.38
VPS35-206ENST00000565228 K7EQM0 130 aa6.4□□□□□ -1.38
VPS35-206ENST00000565228 M0R036 132 aa6.4□□□□□ -1.38
VPS35-206ENST00000565228 SRSF3P84103 164 aaKnown RBP6.4□□□□□ -1.38
VPS35-206ENST00000565228 MEF2BQ02080 365 aaPredicted RBP6.4□□□□□ -1.38
VPS35-206ENST00000565228 Q6ZSN1 163 aa6.4□□□□□ -1.38
VPS35-206ENST00000565228 TCEAL7Q9BRU2 100 aa6.4□□□□□ -1.38
VPS35-206ENST00000565228 NDFIP1Q9BT67 221 aa6.4□□□□□ -1.38
VPS35-206ENST00000565228 Q9UF83 564 aa6.4□□□□□ -1.38
VPS35-206ENST00000565228 ZFP30Q9Y2G7 519 aa6.4□□□□□ -1.38
VPS35-206ENST00000565228 KIAA1109Q2LD37 5005 aa6.4□□□□□ -1.39
VPS35-206ENST00000565228 DNAH11Q96DT5 4516 aa6.4□□□□□ -1.39
VPS35-206ENST00000565228 TRGV11A0A075B6L2 103 aa6.39□□□□□ -1.39
VPS35-206ENST00000565228 TMSB15BA0A087X1C1 80 aa6.39□□□□□ -1.39
VPS35-206ENST00000565228 LOC100131303A0A0U1RQF7 123 aa6.39□□□□□ -1.39
VPS35-206ENST00000565228 FBLL1A6NHQ2 334 aaKnown RBP6.39□□□□□ -1.39
VPS35-206ENST00000565228 FABP5P3A8MUU1 101 aa6.39□□□□□ -1.39
VPS35-206ENST00000565228 UBE2G1P62253 170 aa6.39□□□□□ -1.39
VPS35-206ENST00000565228 OR5I1Q13606 314 aa6.39□□□□□ -1.39
VPS35-206ENST00000565228 LGALS9BQ3B8N2 356 aa6.39□□□□□ -1.39
VPS35-206ENST00000565228 CENPWQ5EE01 88 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms