RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 CXCL1P09341 107 aa9.39□□□□□ -0.91
CLK3-214ENST00000564096 KIR3DS1Q14943 382 aa9.39□□□□□ -0.91
CLK3-214ENST00000564096 TSKUQ8WUA8 353 aa9.39□□□□□ -0.91
CLK3-214ENST00000564096 IMMP2LQ96T52 175 aa9.39□□□□□ -0.91
CLK3-214ENST00000564096 GFRA4Q9GZZ7 299 aa9.39□□□□□ -0.91
CLK3-214ENST00000564096 IGHV1OR15-1A0A075B7D0 117 aa9.38□□□□□ -0.91
CLK3-214ENST00000564096 ASIPP42127 132 aa9.38□□□□□ -0.91
CLK3-214ENST00000564096 MUC21Q5SSG8 566 aa9.38□□□□□ -0.91
CLK3-214ENST00000564096 LINC01587Q99440 93 aa9.38□□□□□ -0.91
CLK3-214ENST00000564096 SMCO4Q9NRQ5 59 aa9.38□□□□□ -0.91
CLK3-214ENST00000564096 IL36BQ9NZH7 164 aa9.38□□□□□ -0.91
CLK3-214ENST00000564096 TMSB15BA0A087X1C1 80 aa9.37□□□□□ -0.91
CLK3-214ENST00000564096 A0A1W2PPQ1 181 aa9.37□□□□□ -0.91
CLK3-214ENST00000564096 FAM231BA6NCW3 169 aa9.37□□□□□ -0.91
CLK3-214ENST00000564096 CBY3A6NI87 242 aa9.37□□□□□ -0.91
CLK3-214ENST00000564096 ZNF324O75467 553 aaPredicted RBP9.37□□□□□ -0.91
CLK3-214ENST00000564096 S100A4P26447 101 aaKnown RBP9.37□□□□□ -0.91
CLK3-214ENST00000564096 RPL19P84098 196 aaKnown RBP9.37□□□□□ -0.91
CLK3-214ENST00000564096 TDRG1Q3Y452 100 aa9.37□□□□□ -0.91
CLK3-214ENST00000564096 ANXA2RQ3ZCQ2 193 aa9.37□□□□□ -0.91
CLK3-214ENST00000564096 ATRAIDQ6UW56 229 aa9.37□□□□□ -0.91
CLK3-214ENST00000564096 BORCS7Q96B45 105 aa9.37□□□□□ -0.91
CLK3-214ENST00000564096 BTF3L4Q96K17 158 aa9.37□□□□□ -0.91
CLK3-214ENST00000564096 LINC00467Q9BRT7 94 aa9.37□□□□□ -0.91
CLK3-214ENST00000564096 NAT8BQ9UHF3 227 aa9.37□□□□□ -0.91
CLK3-214ENST00000564096 SORL1Q92673 2214 aa9.37□□□□□ -0.91
CLK3-214ENST00000564096 IGKV3D-20A0A0C4DH25 116 aa9.36□□□□□ -0.91
CLK3-214ENST00000564096 NEU1Q99519 415 aa9.36□□□□□ -0.91
CLK3-214ENST00000564096 TRAV9-1A0A075B6T8 112 aa9.35□□□□□ -0.91
CLK3-214ENST00000564096 IGHV3OR16-12A0A075B7B8 117 aa9.35□□□□□ -0.91
CLK3-214ENST00000564096 SMIM27A0A1W2PRY6 76 aa9.35□□□□□ -0.91
CLK3-214ENST00000564096 TYMSP04818 313 aa9.35□□□□□ -0.91
CLK3-214ENST00000564096 GIG44P09565 113 aaPredicted RBP9.35□□□□□ -0.91
CLK3-214ENST00000564096 FRMD6-AS1P0C7T7 363 aa9.35□□□□□ -0.91
CLK3-214ENST00000564096 RBMY1A1P0DJD3 496 aaKnown RBP9.35□□□□□ -0.91
CLK3-214ENST00000564096 RBMY1CP0DJD4 496 aa9.35□□□□□ -0.91
CLK3-214ENST00000564096 MED14OSP0DP75 135 aa9.35□□□□□ -0.91
CLK3-214ENST00000564096 TCL1AP56279 114 aa9.35□□□□□ -0.91
CLK3-214ENST00000564096 ZNF415Q09FC8 603 aa9.35□□□□□ -0.91
CLK3-214ENST00000564096 RBMY1FQ15415 496 aaKnown RBP9.35□□□□□ -0.91
CLK3-214ENST00000564096 FER1L6-AS1Q8NA97 138 aa9.35□□□□□ -0.91
CLK3-214ENST00000564096 TPPP3Q9BW30 176 aa9.35□□□□□ -0.91
CLK3-214ENST00000564096 C11orf21Q9P2W6 132 aa9.35□□□□□ -0.91
CLK3-214ENST00000564096 HIGD1CA8MV81 97 aa9.34□□□□□ -0.91
CLK3-214ENST00000564096 ZNF705AQ6ZN79 300 aaPredicted RBP9.34□□□□□ -0.91
CLK3-214ENST00000564096 Q6ZWC4 215 aa9.34□□□□□ -0.91
CLK3-214ENST00000564096 CBLN2Q8IUK8 224 aa9.34□□□□□ -0.91
CLK3-214ENST00000564096 RCHY1Q96PM5 261 aa9.34□□□□□ -0.91
CLK3-214ENST00000564096 GRIFINA4D1Z8 144 aa9.33□□□□□ -0.92
CLK3-214ENST00000564096 F2Z2F3 143 aa9.33□□□□□ -0.92
CLK3-214ENST00000564096 H3BVH4 76 aa9.33□□□□□ -0.92
CLK3-214ENST00000564096 HTN1P15515 57 aa9.33□□□□□ -0.92
CLK3-214ENST00000564096 CTRLP40313 264 aa9.33□□□□□ -0.92
CLK3-214ENST00000564096 RRN3P1Q2M238 152 aa9.33□□□□□ -0.92
CLK3-214ENST00000564096 DEFB135Q30KP9 77 aa9.33□□□□□ -0.92
CLK3-214ENST00000564096 DNLZQ5SXM8 178 aa9.33□□□□□ -0.92
CLK3-214ENST00000564096 TMEM88Q6PEY1 159 aa9.33□□□□□ -0.92
CLK3-214ENST00000564096 Q6ZQT7 251 aa9.33□□□□□ -0.92
CLK3-214ENST00000564096 C1orf158Q8N1D5 194 aa9.33□□□□□ -0.92
CLK3-214ENST00000564096 CSNK1G2-AS1Q8NCQ2 148 aa9.33□□□□□ -0.92
CLK3-214ENST00000564096 TMEM263Q8WUH6 116 aaKnown RBP9.33□□□□□ -0.92
CLK3-214ENST00000564096 C16orf74Q96GX8 76 aa9.33□□□□□ -0.92
CLK3-214ENST00000564096 URGCP-MRPS24S4R325 110 aa9.33□□□□□ -0.92
CLK3-214ENST00000564096 SMIM9A6NGZ8 99 aa9.32□□□□□ -0.92
CLK3-214ENST00000564096 K7EIL1 84 aa9.32□□□□□ -0.92
CLK3-214ENST00000564096 OR5AL1P0C617 328 aa9.32□□□□□ -0.92
CLK3-214ENST00000564096 IGLC6P0CF74 106 aa9.32□□□□□ -0.92
CLK3-214ENST00000564096 GZMBP10144 247 aa9.32□□□□□ -0.92
CLK3-214ENST00000564096 ZNF493Q6ZR52 646 aa9.32□□□□□ -0.92
CLK3-214ENST00000564096 GTSF1Q8WW33 167 aa9.32□□□□□ -0.92
CLK3-214ENST00000564096 TP53TG1Q9Y2A0 90 aa9.32□□□□□ -0.92
CLK3-214ENST00000564096 IGHV3-16A0A0C4DH30 117 aa9.31□□□□□ -0.92
CLK3-214ENST00000564096 SNAI2O43623 268 aa9.31□□□□□ -0.92
CLK3-214ENST00000564096 SCO1O75880 301 aa9.31□□□□□ -0.92
CLK3-214ENST00000564096 PRB2P02812 416 aaPredicted RBP9.31□□□□□ -0.92
CLK3-214ENST00000564096 S100A8P05109 93 aa9.31□□□□□ -0.92
CLK3-214ENST00000564096 FOXA3P55318 350 aaPredicted RBP9.31□□□□□ -0.92
CLK3-214ENST00000564096 CACNG7P62955 275 aa9.31□□□□□ -0.92
CLK3-214ENST00000564096 ATP5L2Q7Z4Y8 100 aa9.31□□□□□ -0.92
CLK3-214ENST00000564096 SYT8Q8NBV8 401 aa9.31□□□□□ -0.92
CLK3-214ENST00000564096 NUP35Q8NFH5 326 aa9.31□□□□□ -0.92
CLK3-214ENST00000564096 PGLYRP4Q96LB8 373 aa9.31□□□□□ -0.92
CLK3-214ENST00000564096 PHLDA3Q9Y5J5 127 aa9.31□□□□□ -0.92
CLK3-214ENST00000564096 TIMM8BQ9Y5J9 83 aaPredicted RBP9.31□□□□□ -0.92
CLK3-214ENST00000564096 AGRNO00468 2067 aa9.3□□□□□ -0.92
CLK3-214ENST00000564096 A0A1B0GUT8 65 aa9.3□□□□□ -0.92
CLK3-214ENST00000564096 A0A1B0GW15 77 aa9.3□□□□□ -0.92
CLK3-214ENST00000564096 SNURFLB1AK76 121 aa9.3□□□□□ -0.92
CLK3-214ENST00000564096 GNRH2O43555 120 aa9.3□□□□□ -0.92
CLK3-214ENST00000564096 ARMS2P0C7Q2 107 aa9.3□□□□□ -0.92
CLK3-214ENST00000564096 FAM3BP58499 235 aaPredicted RBP9.3□□□□□ -0.92
CLK3-214ENST00000564096 RIGQ13278 110 aa9.3□□□□□ -0.92
CLK3-214ENST00000564096 DEFB121Q5J5C9 76 aa9.3□□□□□ -0.92
CLK3-214ENST00000564096 SPANXN1Q5VSR9 72 aa9.3□□□□□ -0.92
CLK3-214ENST00000564096 LYZL1Q6UWQ5 148 aa9.3□□□□□ -0.92
CLK3-214ENST00000564096 ZFP82Q8N141 532 aa9.3□□□□□ -0.92
CLK3-214ENST00000564096 MRAPQ8TCY5 172 aa9.3□□□□□ -0.92
CLK3-214ENST00000564096 RNF183Q96D59 192 aa9.3□□□□□ -0.92
CLK3-214ENST00000564096 CMYA5Q8N3K9 4069 aa9.3□□□□□ -0.92
CLK3-214ENST00000564096 TRBV24-1A0A075B6N3 115 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms