RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 C18orf15Q96N68 181 aa12.8□□□□□ -0.36
SNRPA1-203ENST00000540017 ARL2-SNX15V9GYD0 113 aa12.8□□□□□ -0.36
SNRPA1-203ENST00000540017 EPPK1P58107 5090 aaKnown RBP12.79□□□□□ -0.36
SNRPA1-203ENST00000540017 TRGV11A0A075B6L2 103 aa12.79□□□□□ -0.36
SNRPA1-203ENST00000540017 TRGV2A0A075B6R0 118 aa12.79□□□□□ -0.36
SNRPA1-203ENST00000540017 H2AFB1P0C5Y9 115 aa12.79□□□□□ -0.36
SNRPA1-203ENST00000540017 HIST1H2BAQ96A08 127 aa12.79□□□□□ -0.36
SNRPA1-203ENST00000540017 TRAV26-1A0A087WT03 109 aa12.78□□□□□ -0.36
SNRPA1-203ENST00000540017 IGHV3-16A0A0C4DH30 117 aa12.78□□□□□ -0.36
SNRPA1-203ENST00000540017 FBLL1A6NHQ2 334 aaKnown RBP12.78□□□□□ -0.36
SNRPA1-203ENST00000540017 NUDT3O95989 172 aa12.78□□□□□ -0.36
SNRPA1-203ENST00000540017 TYMSP04818 313 aa12.78□□□□□ -0.36
SNRPA1-203ENST00000540017 CCL20P78556 96 aa12.78□□□□□ -0.36
SNRPA1-203ENST00000540017 LGALS9BQ3B8N2 356 aa12.78□□□□□ -0.36
SNRPA1-203ENST00000540017 SMUG1Q53HV7 270 aa12.78□□□□□ -0.36
SNRPA1-203ENST00000540017 Q86TA4 180 aa12.78□□□□□ -0.36
SNRPA1-203ENST00000540017 C9orf62Q8N4C0 152 aa12.78□□□□□ -0.36
SNRPA1-203ENST00000540017 A0A0J9YY99 117 aa12.77□□□□□ -0.37
SNRPA1-203ENST00000540017 PFN1P07737 140 aaKnown RBP12.77□□□□□ -0.37
SNRPA1-203ENST00000540017 SAPCD1Q5SSQ6 148 aa12.77□□□□□ -0.37
SNRPA1-203ENST00000540017 IGHV3-53P01767 116 aa12.76□□□□□ -0.37
SNRPA1-203ENST00000540017 PPT1P50897 306 aa12.76□□□□□ -0.37
SNRPA1-203ENST00000540017 SLC51BQ86UW2 128 aa12.76□□□□□ -0.37
SNRPA1-203ENST00000540017 SPXQ9BT56 116 aa12.76□□□□□ -0.37
SNRPA1-203ENST00000540017 SDF2L1Q9HCN8 221 aa12.76□□□□□ -0.37
SNRPA1-203ENST00000540017 SULT1A2P50226 295 aa12.75□□□□□ -0.37
SNRPA1-203ENST00000540017 ZFP69Q49AA0 526 aa12.75□□□□□ -0.37
SNRPA1-203ENST00000540017 VSIG2Q96IQ7 327 aa12.75□□□□□ -0.37
SNRPA1-203ENST00000540017 KCNS1Q96KK3 526 aa12.75□□□□□ -0.37
SNRPA1-203ENST00000540017 DNAH10Q8IVF4 4471 aa12.75□□□□□ -0.37
SNRPA1-203ENST00000540017 MUC4Q99102 2169 aa12.74□□□□□ -0.37
SNRPA1-203ENST00000540017 CRIP1P50238 77 aa12.74□□□□□ -0.37
SNRPA1-203ENST00000540017 RAB5CP51148 216 aa12.74□□□□□ -0.37
SNRPA1-203ENST00000540017 RNF212Q495C1 297 aa12.74□□□□□ -0.37
SNRPA1-203ENST00000540017 EIF5AL1Q6IS14 154 aaKnown RBP12.74□□□□□ -0.37
SNRPA1-203ENST00000540017 UBE2DNLQ8IWF7 75 aa12.74□□□□□ -0.37
SNRPA1-203ENST00000540017 RASL10AQ92737 203 aa12.74□□□□□ -0.37
SNRPA1-203ENST00000540017 ZC2HC1AQ96GY0 325 aa12.74□□□□□ -0.37
SNRPA1-203ENST00000540017 FMC1Q96HJ9 113 aa12.74□□□□□ -0.37
SNRPA1-203ENST00000540017 TCEAL7Q9BRU2 100 aa12.74□□□□□ -0.37
SNRPA1-203ENST00000540017 NACAE9PAV3 2078 aa12.73□□□□□ -0.37
SNRPA1-203ENST00000540017 TRAV1-1A0A0B4J248 108 aa12.73□□□□□ -0.37
SNRPA1-203ENST00000540017 SCO2A0A1W2PP80 73 aa12.73□□□□□ -0.37
SNRPA1-203ENST00000540017 IGKV3D-20A0A0C4DH25 116 aa12.72□□□□□ -0.37
SNRPA1-203ENST00000540017 TRBV6-1A0A0K0K1D8 114 aa12.72□□□□□ -0.37
SNRPA1-203ENST00000540017 LTAP01374 205 aa12.72□□□□□ -0.37
SNRPA1-203ENST00000540017 SFTA3P0C7M3 94 aa12.72□□□□□ -0.37
SNRPA1-203ENST00000540017 AKR1C3P42330 323 aa12.72□□□□□ -0.37
SNRPA1-203ENST00000540017 UBE2G1P62253 170 aa12.72□□□□□ -0.37
SNRPA1-203ENST00000540017 FHL2Q14192 279 aa12.72□□□□□ -0.37
SNRPA1-203ENST00000540017 COX8CQ7Z4L0 72 aa12.72□□□□□ -0.37
SNRPA1-203ENST00000540017 ZNF479Q96JC4 524 aa12.72□□□□□ -0.37
SNRPA1-203ENST00000540017 ZFP30Q9Y2G7 519 aa12.72□□□□□ -0.37
SNRPA1-203ENST00000540017 FRAS1Q86XX4 4008 aa12.72□□□□□ -0.37
SNRPA1-203ENST00000540017 FABP5P3A8MUU1 101 aa12.71□□□□□ -0.37
SNRPA1-203ENST00000540017 H3BNG1 76 aa12.71□□□□□ -0.37
SNRPA1-203ENST00000540017 M0R2P5 195 aa12.71□□□□□ -0.37
SNRPA1-203ENST00000540017 NKX2-5P52952 324 aaPredicted RBP12.71□□□□□ -0.37
SNRPA1-203ENST00000540017 GNG13Q9P2W3 67 aa12.71□□□□□ -0.37
SNRPA1-203ENST00000540017 IGLV2-18A0A075B6J9 118 aa12.7□□□□□ -0.38
SNRPA1-203ENST00000540017 M0R2N4 97 aa12.7□□□□□ -0.38
SNRPA1-203ENST00000540017 RNASE3P12724 160 aaKnown RBP12.7□□□□□ -0.38
SNRPA1-203ENST00000540017 C9orf85Q96MD7 179 aa12.7□□□□□ -0.38
SNRPA1-203ENST00000540017 LINC00588Q9Y4M8 146 aa12.7□□□□□ -0.38
SNRPA1-203ENST00000540017 A0A096LPF7 62 aa12.69□□□□□ -0.38
SNRPA1-203ENST00000540017 SH2D1AO60880 128 aa12.69□□□□□ -0.38
SNRPA1-203ENST00000540017 ZNF575Q86XF7 245 aa12.69□□□□□ -0.38
SNRPA1-203ENST00000540017 NHLRC2Q8NBF2 726 aa12.69□□□□□ -0.38
SNRPA1-203ENST00000540017 MANBALQ9NQG1 85 aa12.69□□□□□ -0.38
SNRPA1-203ENST00000540017 PAX4O43316 350 aa12.68□□□□□ -0.38
SNRPA1-203ENST00000540017 CRYBA4P53673 196 aa12.68□□□□□ -0.38
SNRPA1-203ENST00000540017 PRO0255Q9UI72 69 aa12.68□□□□□ -0.38
SNRPA1-203ENST00000540017 HHLA3Q9XRX5 114 aa12.68□□□□□ -0.38
SNRPA1-203ENST00000540017 BOLA1Q9Y3E2 137 aa12.68□□□□□ -0.38
SNRPA1-203ENST00000540017 DNAH2Q9P225 4427 aa12.67□□□□□ -0.38
SNRPA1-203ENST00000540017 TRAV4A0A0B4J268 109 aa12.67□□□□□ -0.38
SNRPA1-203ENST00000540017 PGPEP1LA6NFU8 196 aa12.67□□□□□ -0.38
SNRPA1-203ENST00000540017 C9JCJ5 164 aa12.67□□□□□ -0.38
SNRPA1-203ENST00000540017 ORM1P02763 201 aa12.67□□□□□ -0.38
SNRPA1-203ENST00000540017 CCL18P55774 89 aa12.67□□□□□ -0.38
SNRPA1-203ENST00000540017 ESRGQ1W209 222 aa12.67□□□□□ -0.38
SNRPA1-203ENST00000540017 ZNF674Q2M3X9 581 aa12.67□□□□□ -0.38
SNRPA1-203ENST00000540017 ALKAL2Q6UX46 152 aa12.67□□□□□ -0.38
SNRPA1-203ENST00000540017 ZNRF2Q8NHG8 242 aa12.67□□□□□ -0.38
SNRPA1-203ENST00000540017 TRGV4A0A0C4DH28 118 aa12.66□□□□□ -0.38
SNRPA1-203ENST00000540017 KRBOX1C9JBD0 128 aa12.66□□□□□ -0.38
SNRPA1-203ENST00000540017 M0R036 132 aa12.66□□□□□ -0.38
SNRPA1-203ENST00000540017 FAM3BP58499 235 aaPredicted RBP12.66□□□□□ -0.38
SNRPA1-203ENST00000540017 ZNF876PQ49A33 203 aa12.66□□□□□ -0.38
SNRPA1-203ENST00000540017 FAM162BQ5T6X4 162 aa12.66□□□□□ -0.38
SNRPA1-203ENST00000540017 Q6ZR54 194 aa12.66□□□□□ -0.38
SNRPA1-203ENST00000540017 OR4C5Q8NGB2 326 aa12.66□□□□□ -0.38
SNRPA1-203ENST00000540017 DERL1Q9BUN8 251 aa12.66□□□□□ -0.38
SNRPA1-203ENST00000540017 MLST8Q9BVC4 326 aa12.66□□□□□ -0.38
SNRPA1-203ENST00000540017 B4DEV8 164 aa12.65□□□□□ -0.38
SNRPA1-203ENST00000540017 S100A9P06702 114 aaKnown RBP12.65□□□□□ -0.38
SNRPA1-203ENST00000540017 ZNF506Q5JVG8 444 aa12.65□□□□□ -0.38
SNRPA1-203ENST00000540017 BAGE2Q86Y30 109 aa12.65□□□□□ -0.38
SNRPA1-203ENST00000540017 C11orf52Q96A22 123 aa12.65□□□□□ -0.38
SNRPA1-203ENST00000540017 BIRC6Q9NR09 4857 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms