RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 POPDC3Q9HBV1 291 aa1.02□□□□□ -2.25
CD44-234ENST00000531873 MXRA5Q9NR99 2828 aa1.02□□□□□ -2.25
CD44-234ENST00000531873 TENM3Q9P273 2699 aa1.02□□□□□ -2.25
CD44-234ENST00000531873 ATPIF1Q9UII2 106 aa1.02□□□□□ -2.25
CD44-234ENST00000531873 OR52A1Q9UKL2 312 aa1.02□□□□□ -2.25
CD44-234ENST00000531873 DOPEY2Q9Y3R5 2298 aa1.02□□□□□ -2.25
CD44-234ENST00000531873 SOX21Q9Y651 276 aaPredicted RBP1.02□□□□□ -2.25
CD44-234ENST00000531873 CHCHD2Q9Y6H1 151 aaPredicted RBP1.02□□□□□ -2.25
CD44-234ENST00000531873 CHD9Q3L8U1 2897 aa1.02□□□□□ -2.25
CD44-234ENST00000531873 PRRC2CQ9Y520 2896 aaKnown RBP1.02□□□□□ -2.25
CD44-234ENST00000531873 CACNA1EQ15878 2313 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 A0A0G2JMZ2 1700 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 ITSN1Q15811 1721 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 NALCNQ8IZF0 1738 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 HYDINQ4G0P3 5121 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 CEP162Q5TB80 1403 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 A0A1W2PRE2 83 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 ODAMA1E959 279 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 MAP1LC3B2A6NCE7 125 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 HCRTO43612 131 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 PROSCO94903 275 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 APOA2P02652 100 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 PRB4P10163 310 aaPredicted RBP1.01□□□□□ -2.25
CD44-234ENST00000531873 TMBIM6P55061 237 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 ARPP19P56211 112 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 RAB4BP61018 213 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 SURF2Q15527 256 aaPredicted RBP1.01□□□□□ -2.25
CD44-234ENST00000531873 MSMO1Q15800 293 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 FKBP1CQ5VVH2 108 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 EIF5AL1Q6IS14 154 aaKnown RBP1.01□□□□□ -2.25
CD44-234ENST00000531873 FAM24BQ8N5W8 94 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 DEFB119Q8N690 84 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 C12orf29Q8N999 325 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 LINC00301Q8NCQ3 95 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 GPER1Q99527 375 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 RTL8AQ9BWD3 113 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 MAP1LC3BQ9GZQ8 125 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 C6orf62Q9GZU0 229 aaPredicted RBP1.01□□□□□ -2.25
CD44-234ENST00000531873 C14orf132Q9NPU4 83 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 MED9Q9NWA0 146 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 RNF11Q9Y3C5 154 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 AHCTF1Q8WYP5 2266 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 KIAA1109Q2LD37 5005 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 DMDP11532 3685 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 BTAF1O14981 1849 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 SBF2Q86WG5 1849 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 C4BP0C0L5 1744 aa1.01□□□□□ -2.25
CD44-234ENST00000531873 SCN7AQ01118 1682 aa1□□□□□ -2.25
CD44-234ENST00000531873 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1□□□□□ -2.25
CD44-234ENST00000531873 RYR3Q15413 4870 aa1□□□□□ -2.25
CD44-234ENST00000531873 NINQ8N4C6 2090 aa1□□□□□ -2.25
CD44-234ENST00000531873 ALPK3Q96L96 1907 aa1□□□□□ -2.25
CD44-234ENST00000531873 TLCD2A6NGC4 264 aa1□□□□□ -2.25
CD44-234ENST00000531873 DHFRP00374 187 aa1□□□□□ -2.25
CD44-234ENST00000531873 IGLV1-51P01701 117 aa1□□□□□ -2.25
CD44-234ENST00000531873 C1orf137Q5JT78 98 aa1□□□□□ -2.25
CD44-234ENST00000531873 C1orf140Q5VVS0 124 aa1□□□□□ -2.25
CD44-234ENST00000531873 PHF5AQ7RTV0 110 aaKnown RBP1□□□□□ -2.25
CD44-234ENST00000531873 OR2T35Q8NGX2 323 aa1□□□□□ -2.25
CD44-234ENST00000531873 TEX47Q8TBZ9 253 aa1□□□□□ -2.25
CD44-234ENST00000531873 DYDC1Q8WWB3 177 aa1□□□□□ -2.25
CD44-234ENST00000531873 LINC00467Q9BRT7 94 aa1□□□□□ -2.25
CD44-234ENST00000531873 OTORQ9NRC9 128 aa1□□□□□ -2.25
CD44-234ENST00000531873 MED11Q9P086 117 aa1□□□□□ -2.25
CD44-234ENST00000531873 LAMA1P25391 3075 aa1□□□□□ -2.25
CD44-234ENST00000531873 DCHS2Q6V1P9 2916 aa1□□□□□ -2.25
CD44-234ENST00000531873 ZANQ9Y493 2812 aa1□□□□□ -2.25
CD44-234ENST00000531873 ALS2Q96Q42 1657 aa1□□□□□ -2.25
CD44-234ENST00000531873 EIF2AK4Q9P2K8 1649 aaKnown RBP1□□□□□ -2.25
CD44-234ENST00000531873 MYLKQ15746 1914 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 ANKRD31Q8N7Z5 1873 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 URB1O60287 2271 aaKnown RBP0.99□□□□□ -2.25
CD44-234ENST00000531873 KNDC1Q76NI1 1749 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 KIAA1551Q9HCM1 1747 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 TRBV6-8A0A0A6YYG3 113 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 IGKV3D-7A0A0C4DH55 119 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 IGKV3OR2-268A0A0C4DH90 116 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 A0A1B0GV72 72 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 K7ERJ3 54 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 IFNA14P01570 189 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 ZNF93P35789 620 aaPredicted RBP0.99□□□□□ -2.25
CD44-234ENST00000531873 RTL8BQ17RB0 113 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 CLECL1Q8IZS7 167 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 OR4C6Q8NH72 309 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 PPTC7Q8NI37 304 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 RMND5BQ96G75 393 aaPredicted RBP0.99□□□□□ -2.25
CD44-234ENST00000531873 RETNLBQ9BQ08 111 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 USP54Q70EL1 1684 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 ACANP16112 2415 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 SPTBN1Q01082 2364 aaKnown RBP0.99□□□□□ -2.25
CD44-234ENST00000531873 EPPK1P58107 5090 aaKnown RBP0.99□□□□□ -2.25
CD44-234ENST00000531873 CD163L1Q9NR16 1453 aa0.99□□□□□ -2.25
CD44-234ENST00000531873 CSMD2Q7Z408 3487 aa0.98□□□□□ -2.25
CD44-234ENST00000531873 ANKRD26Q9UPS8 1709 aa0.98□□□□□ -2.25
CD44-234ENST00000531873 LAMA5O15230 3695 aa0.98□□□□□ -2.25
CD44-234ENST00000531873 IGKV2D-26A0A0A0MRZ7 120 aa0.98□□□□□ -2.25
CD44-234ENST00000531873 H0YJX3 145 aa0.98□□□□□ -2.25
CD44-234ENST00000531873 H7BYZ3 331 aa0.98□□□□□ -2.25
CD44-234ENST00000531873 HYPMO75409 117 aa0.98□□□□□ -2.25
CD44-234ENST00000531873 IFNA21P01568 189 aa0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms