RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 FAM74A7A6NL05 159 aa7.32□□□□□ -1.24
CD44-227ENST00000528086 CXorf1O96002 111 aa7.32□□□□□ -1.24
CD44-227ENST00000528086 CRYBA4P53673 196 aa7.32□□□□□ -1.24
CD44-227ENST00000528086 DPPA3Q6W0C5 159 aa7.32□□□□□ -1.24
CD44-227ENST00000528086 CMTM2Q8TAZ6 248 aa7.32□□□□□ -1.24
CD44-227ENST00000528086 UPK3BQ9BT76 320 aa7.32□□□□□ -1.24
CD44-227ENST00000528086 RYR1P21817 5038 aa7.32□□□□□ -1.24
CD44-227ENST00000528086 A0A1W2PRE2 83 aa7.31□□□□□ -1.24
CD44-227ENST00000528086 CRIP1P50238 77 aa7.31□□□□□ -1.24
CD44-227ENST00000528086 UBE2G2P60604 165 aa7.31□□□□□ -1.24
CD44-227ENST00000528086 TNP2Q05952 138 aa7.31□□□□□ -1.24
CD44-227ENST00000528086 ZNF415Q09FC8 603 aa7.31□□□□□ -1.24
CD44-227ENST00000528086 ARPC5LQ9BPX5 153 aa7.31□□□□□ -1.24
CD44-227ENST00000528086 ATG101Q9BSB4 218 aa7.31□□□□□ -1.24
CD44-227ENST00000528086 Q9H8V8 135 aa7.31□□□□□ -1.24
CD44-227ENST00000528086 TMEM167BQ9NRX6 74 aa7.31□□□□□ -1.24
CD44-227ENST00000528086 NAGKQ9UJ70 344 aa7.31□□□□□ -1.24
CD44-227ENST00000528086 MRPS16Q9Y3D3 137 aaKnown RBP7.31□□□□□ -1.24
CD44-227ENST00000528086 BORCS7-ASMTA0A0B4J1R7 106 aa7.3□□□□□ -1.24
CD44-227ENST00000528086 TRAV21A0A0B4J279 112 aa7.3□□□□□ -1.24
CD44-227ENST00000528086 IGKV3D-20A0A0C4DH25 116 aa7.3□□□□□ -1.24
CD44-227ENST00000528086 HMSDA8MTL9 139 aa7.3□□□□□ -1.24
CD44-227ENST00000528086 TAAR5O14804 337 aa7.3□□□□□ -1.24
CD44-227ENST00000528086 RNASE3P12724 160 aaKnown RBP7.3□□□□□ -1.24
CD44-227ENST00000528086 CCL18P55774 89 aa7.3□□□□□ -1.24
CD44-227ENST00000528086 FLI1Q01543 452 aaPredicted RBP7.3□□□□□ -1.24
CD44-227ENST00000528086 ZNF345Q14585 488 aa7.3□□□□□ -1.24
CD44-227ENST00000528086 FAM74A1Q5RGS3 127 aa7.3□□□□□ -1.24
CD44-227ENST00000528086 C1orf134Q5TEV5 83 aa7.3□□□□□ -1.24
CD44-227ENST00000528086 FAM159AQ6UWV7 190 aa7.3□□□□□ -1.24
CD44-227ENST00000528086 IQCF2Q8IXL9 164 aa7.3□□□□□ -1.24
CD44-227ENST00000528086 C9orf85Q96MD7 179 aa7.3□□□□□ -1.24
CD44-227ENST00000528086 SPXQ9BT56 116 aa7.3□□□□□ -1.24
CD44-227ENST00000528086 LOC100131303A0A0U1RQF7 123 aa7.29□□□□□ -1.24
CD44-227ENST00000528086 PAX4O43316 350 aa7.29□□□□□ -1.24
CD44-227ENST00000528086 GCGP01275 180 aa7.29□□□□□ -1.24
CD44-227ENST00000528086 PRNTQ86SH4 94 aa7.29□□□□□ -1.24
CD44-227ENST00000528086 CYB561D1Q8N8Q1 229 aa7.29□□□□□ -1.24
CD44-227ENST00000528086 PRO0255Q9UI72 69 aa7.29□□□□□ -1.24
CD44-227ENST00000528086 HHLA3Q9XRX5 114 aa7.29□□□□□ -1.24
CD44-227ENST00000528086 TRGV11A0A075B6L2 103 aa7.28□□□□□ -1.24
CD44-227ENST00000528086 SERTM2A0A1B0GWG4 89 aa7.28□□□□□ -1.24
CD44-227ENST00000528086 MAP1LC3B2A6NCE7 125 aa7.28□□□□□ -1.24
CD44-227ENST00000528086 M0R2P5 195 aa7.28□□□□□ -1.24
CD44-227ENST00000528086 PEX7O00628 323 aa7.28□□□□□ -1.24
CD44-227ENST00000528086 LYPD5Q6UWN5 251 aa7.28□□□□□ -1.24
CD44-227ENST00000528086 Q6ZRN7 208 aaPredicted RBP7.28□□□□□ -1.24
CD44-227ENST00000528086 Q86TA4 180 aa7.28□□□□□ -1.24
CD44-227ENST00000528086 MAP1LC3BQ9GZQ8 125 aa7.28□□□□□ -1.24
CD44-227ENST00000528086 ARL2-SNX15V9GYD0 113 aa7.28□□□□□ -1.24
CD44-227ENST00000528086 TRAV4A0A0B4J268 109 aa7.27□□□□□ -1.25
CD44-227ENST00000528086 PGPEP1LA6NFU8 196 aa7.27□□□□□ -1.25
CD44-227ENST00000528086 K7EQD1 137 aa7.27□□□□□ -1.25
CD44-227ENST00000528086 PFN1P07737 140 aaKnown RBP7.27□□□□□ -1.25
CD44-227ENST00000528086 GATA1P15976 413 aaPredicted RBP7.27□□□□□ -1.25
CD44-227ENST00000528086 AKR1C8PQ5T2L2 129 aa7.27□□□□□ -1.25
CD44-227ENST00000528086 COX8CQ7Z4L0 72 aa7.27□□□□□ -1.25
CD44-227ENST00000528086 C6orf223Q8N319 242 aa7.27□□□□□ -1.25
CD44-227ENST00000528086 MBD3L1Q8WWY6 194 aa7.27□□□□□ -1.25
CD44-227ENST00000528086 Q9UF83 564 aa7.27□□□□□ -1.25
CD44-227ENST00000528086 TNFRSF18Q9Y5U5 241 aa7.27□□□□□ -1.25
CD44-227ENST00000528086 RS1O15537 224 aa7.26□□□□□ -1.25
CD44-227ENST00000528086 BCL2L11O43521 198 aa7.26□□□□□ -1.25
CD44-227ENST00000528086 SEC11BP0C7V7 166 aa7.26□□□□□ -1.25
CD44-227ENST00000528086 CCL20P78556 96 aa7.26□□□□□ -1.25
CD44-227ENST00000528086 LGALSLQ3ZCW2 172 aaPredicted RBP7.26□□□□□ -1.25
CD44-227ENST00000528086 SMUG1Q53HV7 270 aa7.26□□□□□ -1.25
CD44-227ENST00000528086 CFAP126Q5VTH2 177 aa7.26□□□□□ -1.25
CD44-227ENST00000528086 Q6ZSN1 163 aa7.26□□□□□ -1.25
CD44-227ENST00000528086 ZC2HC1AQ96GY0 325 aa7.26□□□□□ -1.25
CD44-227ENST00000528086 SDF2L1Q9HCN8 221 aa7.26□□□□□ -1.25
CD44-227ENST00000528086 ICOSQ9Y6W8 199 aa7.26□□□□□ -1.25
CD44-227ENST00000528086 NXPH4O95158 308 aa7.25□□□□□ -1.25
CD44-227ENST00000528086 GYPEP15421 78 aa7.25□□□□□ -1.25
CD44-227ENST00000528086 ZNF506Q5JVG8 444 aa7.25□□□□□ -1.25
CD44-227ENST00000528086 UFSP1Q6NVU6 142 aa7.25□□□□□ -1.25
CD44-227ENST00000528086 Q6ZNX1 250 aa7.25□□□□□ -1.25
CD44-227ENST00000528086 TMUB2Q71RG4 321 aa7.25□□□□□ -1.25
CD44-227ENST00000528086 KCNS1Q96KK3 526 aa7.25□□□□□ -1.25
CD44-227ENST00000528086 JPT2Q9H910 190 aa7.25□□□□□ -1.25
CD44-227ENST00000528086 TRGV4A0A0C4DH28 118 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 A0A0D9SG52 128 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 TRBV6-1A0A0K0K1D8 114 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 KRBOX1C9JBD0 128 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 C9JCJ5 164 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 PAGE4O60829 102 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 IFNA7P01567 189 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 SLAQ13239 276 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 MRPL23Q16540 153 aaKnown RBP7.24□□□□□ -1.25
CD44-227ENST00000528086 ZNF876PQ49A33 203 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 SAPCD1Q5SSQ6 148 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 WFDC10BQ8IUB3 73 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 SLC25A29Q8N8R3 303 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 OR4C5Q8NGB2 326 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 HIST1H2BAQ96A08 127 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 PTH2Q96A98 100 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 NDFIP1Q9BT67 221 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 ZNF471Q9BX82 626 aaPredicted RBP7.24□□□□□ -1.25
CD44-227ENST00000528086 SAMD10Q9BYL1 202 aa7.24□□□□□ -1.25
CD44-227ENST00000528086 PCLOQ9Y6V0 5065 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms