RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 IGHV3-16A0A0C4DH30 117 aa15.02■□□□□ -0
COL9A3-211ENST00000477612 CRYBA4P53673 196 aa15.02■□□□□ -0
COL9A3-211ENST00000477612 CYB561D1Q8N8Q1 229 aa15.02■□□□□ -0
COL9A3-211ENST00000477612 TMEM75Q8N9X5 138 aa15.02■□□□□ -0
COL9A3-211ENST00000477612 HHLA3Q9XRX5 114 aa15.02■□□□□ -0
COL9A3-211ENST00000477612 HERC2O95714 4834 aa15.02□□□□□ -0.01
COL9A3-211ENST00000477612 PAX4O43316 350 aa15.01□□□□□ -0.01
COL9A3-211ENST00000477612 IGHV3-53P01767 116 aa15.01□□□□□ -0.01
COL9A3-211ENST00000477612 TYMSP04818 313 aa15.01□□□□□ -0.01
COL9A3-211ENST00000477612 FLI1Q01543 452 aaPredicted RBP15.01□□□□□ -0.01
COL9A3-211ENST00000477612 ZNF345Q14585 488 aa15.01□□□□□ -0.01
COL9A3-211ENST00000477612 AKR1C8PQ5T2L2 129 aa15.01□□□□□ -0.01
COL9A3-211ENST00000477612 NAGKQ9UJ70 344 aa15.01□□□□□ -0.01
COL9A3-211ENST00000477612 ZNF80P51504 273 aaPredicted RBP15□□□□□ -0.01
COL9A3-211ENST00000477612 C6orf223Q8N319 242 aa15□□□□□ -0.01
COL9A3-211ENST00000477612 KCNRGQ8N5I3 272 aa15□□□□□ -0.01
COL9A3-211ENST00000477612 C8orf49Q96NF6 230 aa15□□□□□ -0.01
COL9A3-211ENST00000477612 NKX6-2Q9C056 277 aaPredicted RBP15□□□□□ -0.01
COL9A3-211ENST00000477612 SDF2L1Q9HCN8 221 aa15□□□□□ -0.01
COL9A3-211ENST00000477612 ICOSQ9Y6W8 199 aa15□□□□□ -0.01
COL9A3-211ENST00000477612 HMSDA8MTL9 139 aa14.99□□□□□ -0.01
COL9A3-211ENST00000477612 SMLR1H3BR10 107 aa14.99□□□□□ -0.01
COL9A3-211ENST00000477612 M0R2P5 195 aa14.99□□□□□ -0.01
COL9A3-211ENST00000477612 KIAA1109Q2LD37 5005 aa14.98□□□□□ -0.01
COL9A3-211ENST00000477612 A0A1W2PPQ1 181 aa14.98□□□□□ -0.01
COL9A3-211ENST00000477612 GCGP01275 180 aa14.98□□□□□ -0.01
COL9A3-211ENST00000477612 PFN1P07737 140 aaKnown RBP14.98□□□□□ -0.01
COL9A3-211ENST00000477612 SAPCD1Q5SSQ6 148 aa14.98□□□□□ -0.01
COL9A3-211ENST00000477612 ZNF479Q96JC4 524 aa14.98□□□□□ -0.01
COL9A3-211ENST00000477612 C11orf21Q9P2W6 132 aa14.98□□□□□ -0.01
COL9A3-211ENST00000477612 TRAV4A0A0B4J268 109 aa14.97□□□□□ -0.01
COL9A3-211ENST00000477612 FAM74A7A6NL05 159 aa14.97□□□□□ -0.01
COL9A3-211ENST00000477612 MRPL23Q16540 153 aaKnown RBP14.97□□□□□ -0.01
COL9A3-211ENST00000477612 SMUG1Q53HV7 270 aa14.97□□□□□ -0.01
COL9A3-211ENST00000477612 TTC32Q5I0X7 151 aa14.97□□□□□ -0.01
COL9A3-211ENST00000477612 PRNTQ86SH4 94 aa14.97□□□□□ -0.01
COL9A3-211ENST00000477612 OR11H4Q8NGC9 324 aa14.97□□□□□ -0.01
COL9A3-211ENST00000477612 TRGV4A0A0C4DH28 118 aa14.96□□□□□ -0.01
COL9A3-211ENST00000477612 SFTA3P0C7M3 94 aa14.96□□□□□ -0.01
COL9A3-211ENST00000477612 BTF3P20290 206 aaKnown RBP14.96□□□□□ -0.01
COL9A3-211ENST00000477612 FGF8P55075 233 aaPredicted RBP14.96□□□□□ -0.01
COL9A3-211ENST00000477612 MAP1LC3B2A6NCE7 125 aa14.95□□□□□ -0.02
COL9A3-211ENST00000477612 SEC11BP0C7V7 166 aa14.95□□□□□ -0.02
COL9A3-211ENST00000477612 ZFP69Q49AA0 526 aa14.95□□□□□ -0.02
COL9A3-211ENST00000477612 HIST1H2BAQ96A08 127 aa14.95□□□□□ -0.02
COL9A3-211ENST00000477612 LINC00479Q96M42 142 aa14.95□□□□□ -0.02
COL9A3-211ENST00000477612 KRTAP1-5Q9BYS1 174 aa14.95□□□□□ -0.02
COL9A3-211ENST00000477612 MAP1LC3BQ9GZQ8 125 aa14.95□□□□□ -0.02
COL9A3-211ENST00000477612 A0A0D9SG52 128 aa14.94□□□□□ -0.02
COL9A3-211ENST00000477612 UBE2G2P60604 165 aa14.94□□□□□ -0.02
COL9A3-211ENST00000477612 PTH2Q96A98 100 aa14.94□□□□□ -0.02
COL9A3-211ENST00000477612 PEX7O00628 323 aa14.93□□□□□ -0.02
COL9A3-211ENST00000477612 IFNA7P01567 189 aa14.93□□□□□ -0.02
COL9A3-211ENST00000477612 PPT1P50897 306 aa14.93□□□□□ -0.02
COL9A3-211ENST00000477612 LYPD5Q6UWN5 251 aa14.93□□□□□ -0.02
COL9A3-211ENST00000477612 NEGR1Q7Z3B1 354 aa14.93□□□□□ -0.02
COL9A3-211ENST00000477612 OR4C5Q8NGB2 326 aa14.93□□□□□ -0.02
COL9A3-211ENST00000477612 C9orf85Q96MD7 179 aa14.93□□□□□ -0.02
COL9A3-211ENST00000477612 TRAV34A0A0B4J273 112 aa14.92□□□□□ -0.02
COL9A3-211ENST00000477612 K7EQD1 137 aa14.92□□□□□ -0.02
COL9A3-211ENST00000477612 ORM1P02763 201 aa14.92□□□□□ -0.02
COL9A3-211ENST00000477612 FHITP49789 147 aa14.92□□□□□ -0.02
COL9A3-211ENST00000477612 TNP2Q05952 138 aa14.92□□□□□ -0.02
COL9A3-211ENST00000477612 COX8CQ7Z4L0 72 aa14.92□□□□□ -0.02
COL9A3-211ENST00000477612 ARL2-SNX15V9GYD0 113 aa14.92□□□□□ -0.02
COL9A3-211ENST00000477612 SIVA1O15304 175 aa14.91□□□□□ -0.02
COL9A3-211ENST00000477612 CIDEAO60543 219 aa14.91□□□□□ -0.02
COL9A3-211ENST00000477612 STOML3Q8TAV4 291 aa14.91□□□□□ -0.02
COL9A3-211ENST00000477612 MBD3L1Q8WWY6 194 aa14.91□□□□□ -0.02
COL9A3-211ENST00000477612 TCEAL7Q9BRU2 100 aa14.91□□□□□ -0.02
COL9A3-211ENST00000477612 FABP5P3A8MUU1 101 aa14.9□□□□□ -0.02
COL9A3-211ENST00000477612 UMAD1C9J7I0 102 aa14.9□□□□□ -0.02
COL9A3-211ENST00000477612 RNASE3P12724 160 aaKnown RBP14.9□□□□□ -0.02
COL9A3-211ENST00000477612 IGKV3D-20A0A0C4DH25 116 aa14.89□□□□□ -0.03
COL9A3-211ENST00000477612 RS1O15537 224 aa14.89□□□□□ -0.03
COL9A3-211ENST00000477612 BCL2L11O43521 198 aa14.89□□□□□ -0.03
COL9A3-211ENST00000477612 GYPEP15421 78 aa14.89□□□□□ -0.03
COL9A3-211ENST00000477612 ZNF876PQ49A33 203 aa14.89□□□□□ -0.03
COL9A3-211ENST00000477612 Q86TA4 180 aa14.89□□□□□ -0.03
COL9A3-211ENST00000477612 ZFP30Q9Y2G7 519 aa14.89□□□□□ -0.03
COL9A3-211ENST00000477612 TRBV6-1A0A0K0K1D8 114 aa14.88□□□□□ -0.03
COL9A3-211ENST00000477612 KANTRA0A1W2PQU2 76 aa14.88□□□□□ -0.03
COL9A3-211ENST00000477612 C9JCJ5 164 aa14.88□□□□□ -0.03
COL9A3-211ENST00000477612 NXPH4O95158 308 aa14.88□□□□□ -0.03
COL9A3-211ENST00000477612 MED14OSP0DP75 135 aa14.88□□□□□ -0.03
COL9A3-211ENST00000477612 GATA1P15976 413 aaPredicted RBP14.88□□□□□ -0.03
COL9A3-211ENST00000477612 SRIP30626 198 aa14.88□□□□□ -0.03
COL9A3-211ENST00000477612 ZNF471Q9BX82 626 aaPredicted RBP14.88□□□□□ -0.03
COL9A3-211ENST00000477612 PGPEP1LA6NFU8 196 aa14.87□□□□□ -0.03
COL9A3-211ENST00000477612 PIK3CD-AS1Q5SR53 167 aa14.87□□□□□ -0.03
COL9A3-211ENST00000477612 CFAP126Q5VTH2 177 aa14.87□□□□□ -0.03
COL9A3-211ENST00000477612 DPPA3Q6W0C5 159 aa14.87□□□□□ -0.03
COL9A3-211ENST00000477612 PCNPQ8WW12 178 aaKnown RBP14.87□□□□□ -0.03
COL9A3-211ENST00000477612 FMC1Q96HJ9 113 aa14.87□□□□□ -0.03
COL9A3-211ENST00000477612 CRIP1P50238 77 aa14.86□□□□□ -0.03
COL9A3-211ENST00000477612 EIF5AP63241 154 aaKnown RBP14.86□□□□□ -0.03
COL9A3-211ENST00000477612 DNLZQ5SXM8 178 aa14.86□□□□□ -0.03
COL9A3-211ENST00000477612 TXNDC17Q9BRA2 123 aa14.86□□□□□ -0.03
COL9A3-211ENST00000477612 ZNF506Q5JVG8 444 aa14.85□□□□□ -0.03
COL9A3-211ENST00000477612 SH2D6Q7Z4S9 175 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms