RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 GFI1BQ5VTD9 330 aa8.03□□□□□ -1.12
SCN9A-205ENST00000454569 FAM231DQ6ZW35 169 aa8.03□□□□□ -1.12
SCN9A-205ENST00000454569 YPEL4Q96NS1 127 aa8.03□□□□□ -1.12
SCN9A-205ENST00000454569 NDFIP1Q9BT67 221 aa8.03□□□□□ -1.12
SCN9A-205ENST00000454569 V9GYV3 84 aa8.03□□□□□ -1.12
SCN9A-205ENST00000454569 MUC4Q99102 2169 aa8.02□□□□□ -1.12
SCN9A-205ENST00000454569 TRAV12-3A0A0B4J271 114 aa8.02□□□□□ -1.13
SCN9A-205ENST00000454569 ZNF705GA8MUZ8 300 aaPredicted RBP8.02□□□□□ -1.13
SCN9A-205ENST00000454569 SH2D1AO60880 128 aa8.02□□□□□ -1.13
SCN9A-205ENST00000454569 GPX1P07203 203 aa8.02□□□□□ -1.13
SCN9A-205ENST00000454569 IGHV4-30-4P0DP06 118 aa8.02□□□□□ -1.13
SCN9A-205ENST00000454569 RPL19P84098 196 aaKnown RBP8.02□□□□□ -1.13
SCN9A-205ENST00000454569 SAPCD1Q5SSQ6 148 aa8.02□□□□□ -1.13
SCN9A-205ENST00000454569 KPRPQ5T749 579 aaPredicted RBP8.02□□□□□ -1.13
SCN9A-205ENST00000454569 NUDT10Q8NFP7 164 aa8.02□□□□□ -1.13
SCN9A-205ENST00000454569 NUDT11Q96G61 164 aa8.02□□□□□ -1.13
SCN9A-205ENST00000454569 IMMP2LQ96T52 175 aa8.02□□□□□ -1.13
SCN9A-205ENST00000454569 IL36BQ9NZH7 164 aa8.02□□□□□ -1.13
SCN9A-205ENST00000454569 XCL2Q9UBD3 114 aa8.02□□□□□ -1.13
SCN9A-205ENST00000454569 TGIF2-C20orf24A0A0A6YYL0 155 aa8.01□□□□□ -1.13
SCN9A-205ENST00000454569 A0A1W2PPQ1 181 aa8.01□□□□□ -1.13
SCN9A-205ENST00000454569 ZNF324O75467 553 aaPredicted RBP8.01□□□□□ -1.13
SCN9A-205ENST00000454569 PFN1P07737 140 aaKnown RBP8.01□□□□□ -1.13
SCN9A-205ENST00000454569 CXCL1P09341 107 aa8.01□□□□□ -1.13
SCN9A-205ENST00000454569 RAB5AP20339 215 aa8.01□□□□□ -1.13
SCN9A-205ENST00000454569 CDKN1BP46527 198 aa8.01□□□□□ -1.13
SCN9A-205ENST00000454569 DAZAP1Q96EP5 407 aaKnown RBP8.01□□□□□ -1.13
SCN9A-205ENST00000454569 ODF3Q96PU9 254 aa8.01□□□□□ -1.13
SCN9A-205ENST00000454569 LENEPQ9Y5L5 61 aa8.01□□□□□ -1.13
SCN9A-205ENST00000454569 K7EIL1 84 aa8.01□□□□□ -1.13
SCN9A-205ENST00000454569 GATCO43716 136 aaKnown RBP8.01□□□□□ -1.13
SCN9A-205ENST00000454569 CA1P00915 261 aaPredicted RBP8.01□□□□□ -1.13
SCN9A-205ENST00000454569 P01737 135 aa8.01□□□□□ -1.13
SCN9A-205ENST00000454569 C1orf158Q8N1D5 194 aa8.01□□□□□ -1.13
SCN9A-205ENST00000454569 TENM3Q9P273 2699 aa8□□□□□ -1.13
SCN9A-205ENST00000454569 TRBV24-1A0A075B6N3 115 aa8□□□□□ -1.13
SCN9A-205ENST00000454569 IGKV3D-20A0A0C4DH25 116 aa8□□□□□ -1.13
SCN9A-205ENST00000454569 TRBV7-9A0A0J9YWB2 115 aa8□□□□□ -1.13
SCN9A-205ENST00000454569 C7orf71A4D174 169 aa8□□□□□ -1.13
SCN9A-205ENST00000454569 GZMBP10144 247 aa8□□□□□ -1.13
SCN9A-205ENST00000454569 LEPP41159 167 aa8□□□□□ -1.13
SCN9A-205ENST00000454569 FAM3BP58499 235 aaPredicted RBP8□□□□□ -1.13
SCN9A-205ENST00000454569 MUC21Q5SSG8 566 aa8□□□□□ -1.13
SCN9A-205ENST00000454569 Q6AWC8 147 aa8□□□□□ -1.13
SCN9A-205ENST00000454569 CSNK1G2-AS1Q8NCQ2 148 aa8□□□□□ -1.13
SCN9A-205ENST00000454569 BTF3L4Q96K17 158 aa8□□□□□ -1.13
SCN9A-205ENST00000454569 FAM210BQ96KR6 192 aa8□□□□□ -1.13
SCN9A-205ENST00000454569 RPP21Q9H633 154 aaKnown RBP8□□□□□ -1.13
SCN9A-205ENST00000454569 TP53TG3Q9ULZ0 132 aa8□□□□□ -1.13
SCN9A-205ENST00000454569 TRAV9-1A0A075B6T8 112 aa7.99□□□□□ -1.13
SCN9A-205ENST00000454569 TMSB15BA0A087X1C1 80 aa7.99□□□□□ -1.13
SCN9A-205ENST00000454569 FABP5P3A8MUU1 101 aa7.99□□□□□ -1.13
SCN9A-205ENST00000454569 SPRY2O43597 315 aa7.99□□□□□ -1.13
SCN9A-205ENST00000454569 RPS10P46783 165 aaKnown RBP7.99□□□□□ -1.13
SCN9A-205ENST00000454569 FAM162BQ5T6X4 162 aa7.99□□□□□ -1.13
SCN9A-205ENST00000454569 GRIFINA4D1Z8 144 aa7.98□□□□□ -1.13
SCN9A-205ENST00000454569 GNRH2O43555 120 aa7.98□□□□□ -1.13
SCN9A-205ENST00000454569 CT83Q5H943 113 aa7.98□□□□□ -1.13
SCN9A-205ENST00000454569 PYGO2Q9BRQ0 406 aa7.98□□□□□ -1.13
SCN9A-205ENST00000454569 LOC102724200A0A096LPH7 203 aaPredicted RBP7.97□□□□□ -1.13
SCN9A-205ENST00000454569 SMIM27A0A1W2PRY6 76 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 ZNF561-AS1K7EIQ3 104 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 TSPOP30536 169 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 TCL1AP56279 114 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 ANXA2RQ3ZCQ2 193 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 LINC00518Q8N0U6 118 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 CSTL1Q9H114 145 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 NAGKQ9UJ70 344 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 A8MWL6 223 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 C1orf196B1AJZ1 125 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 ORM1P02763 201 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 FRMD6-AS1P0C7T7 363 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 AZU1P20160 251 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 OR2D3Q8NGH3 330 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 TSKUQ8WUA8 353 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 X6R8D5 127 aa7.97□□□□□ -1.13
SCN9A-205ENST00000454569 NACAE9PAV3 2078 aa7.96□□□□□ -1.14
SCN9A-205ENST00000454569 IGHV3OR16-12A0A075B7B8 117 aa7.96□□□□□ -1.14
SCN9A-205ENST00000454569 TRAV21A0A0B4J279 112 aa7.96□□□□□ -1.14
SCN9A-205ENST00000454569 A8MZ25 164 aa7.96□□□□□ -1.14
SCN9A-205ENST00000454569 TYMSP04818 313 aa7.96□□□□□ -1.14
SCN9A-205ENST00000454569 HTN1P15515 57 aa7.96□□□□□ -1.14
SCN9A-205ENST00000454569 RAB5BP61020 215 aa7.96□□□□□ -1.14
SCN9A-205ENST00000454569 CFAP161Q6P656 301 aa7.96□□□□□ -1.14
SCN9A-205ENST00000454569 MORN3Q6PF18 240 aaPredicted RBP7.96□□□□□ -1.14
SCN9A-205ENST00000454569 GTSF1Q8WW33 167 aa7.96□□□□□ -1.14
SCN9A-205ENST00000454569 NAT8BQ9UHF3 227 aa7.96□□□□□ -1.14
SCN9A-205ENST00000454569 COL7A1Q02388 2944 aa7.96□□□□□ -1.14
SCN9A-205ENST00000454569 DNAH9Q9NYC9 4486 aa7.95□□□□□ -1.14
SCN9A-205ENST00000454569 MUC21A0A0G2JKD1 596 aa7.95□□□□□ -1.14
SCN9A-205ENST00000454569 MUC21A0A140T8X8 626 aa7.95□□□□□ -1.14
SCN9A-205ENST00000454569 TMEM189A5PLL7 270 aa7.95□□□□□ -1.14
SCN9A-205ENST00000454569 INSP01308 110 aa7.95□□□□□ -1.14
SCN9A-205ENST00000454569 NUTF2P61970 127 aaKnown RBP7.95□□□□□ -1.14
SCN9A-205ENST00000454569 DEFB135Q30KP9 77 aa7.95□□□□□ -1.14
SCN9A-205ENST00000454569 NEU1Q99519 415 aa7.95□□□□□ -1.14
SCN9A-205ENST00000454569 GFRA4Q9GZZ7 299 aa7.95□□□□□ -1.14
SCN9A-205ENST00000454569 PRKDCP78527 4128 aaKnown RBP7.95□□□□□ -1.14
SCN9A-205ENST00000454569 MEGF8Q7Z7M0 2845 aa7.95□□□□□ -1.14
SCN9A-205ENST00000454569 HUWE1Q7Z6Z7 4374 aaKnown RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms