RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 U3KQA8 63 aa10.52□□□□□ -0.73
USP40-208ENST00000450966 IGHV1-8P0DP01 117 aa10.52□□□□□ -0.73
USP40-208ENST00000450966 ALPK2Q86TB3 2170 aa10.52□□□□□ -0.73
USP40-208ENST00000450966 DEFB121Q5J5C9 76 aa10.52□□□□□ -0.73
USP40-208ENST00000450966 MRPS36P82909 103 aaKnown RBP10.52□□□□□ -0.73
USP40-208ENST00000450966 C1orf159Q96HA4 380 aa10.51□□□□□ -0.73
USP40-208ENST00000450966 K7EM74 188 aa10.51□□□□□ -0.73
USP40-208ENST00000450966 TRAV26-2A0A0B4J265 109 aa10.51□□□□□ -0.73
USP40-208ENST00000450966 TRAV4A0A0B4J268 109 aa10.51□□□□□ -0.73
USP40-208ENST00000450966 H3BQ85 93 aa10.51□□□□□ -0.73
USP40-208ENST00000450966 CLPSP04118 112 aa10.51□□□□□ -0.73
USP40-208ENST00000450966 CFAP126Q5VTH2 177 aa10.51□□□□□ -0.73
USP40-208ENST00000450966 TEX49A0A1B0GTD5 131 aa10.51□□□□□ -0.73
USP40-208ENST00000450966 PSPNO60542 156 aa10.51□□□□□ -0.73
USP40-208ENST00000450966 C15orf32Q32M92 178 aa10.51□□□□□ -0.73
USP40-208ENST00000450966 MLANAQ16655 118 aa10.5□□□□□ -0.73
USP40-208ENST00000450966 DEFB104AQ8WTQ1 72 aa10.5□□□□□ -0.73
USP40-208ENST00000450966 PRO0628Q9UI54 55 aa10.5□□□□□ -0.73
USP40-208ENST00000450966 TFF1P04155 84 aa10.5□□□□□ -0.73
USP40-208ENST00000450966 NYNRINQ9P2P1 1898 aaKnown RBP10.5□□□□□ -0.73
USP40-208ENST00000450966 SRRM4A7MD48 611 aaKnown RBP10.5□□□□□ -0.73
USP40-208ENST00000450966 H3BUX3 64 aa10.5□□□□□ -0.73
USP40-208ENST00000450966 TMEM200BQ69YZ2 307 aa10.5□□□□□ -0.73
USP40-208ENST00000450966 FOXL2NBQ6ZUU3 175 aa10.5□□□□□ -0.73
USP40-208ENST00000450966 CACNA1IQ9P0X4 2223 aa10.5□□□□□ -0.73
USP40-208ENST00000450966 IGHV1-3A0A0C4DH29 117 aa10.5□□□□□ -0.73
USP40-208ENST00000450966 FAM223BA6NKX1 122 aa10.5□□□□□ -0.73
USP40-208ENST00000450966 FAM223AQ8IWN6 122 aa10.5□□□□□ -0.73
USP40-208ENST00000450966 ESPL1Q14674 2120 aa10.5□□□□□ -0.73
USP40-208ENST00000450966 TIMM17BO60830 172 aa10.49□□□□□ -0.73
USP40-208ENST00000450966 TRBV12-3P01733 135 aa10.49□□□□□ -0.73
USP40-208ENST00000450966 RPL18AQ02543 176 aaKnown RBP10.49□□□□□ -0.73
USP40-208ENST00000450966 LINC00526Q96FQ7 95 aa10.49□□□□□ -0.73
USP40-208ENST00000450966 RHOHQ15669 191 aa10.49□□□□□ -0.73
USP40-208ENST00000450966 A0A087WWL8 130 aa10.49□□□□□ -0.73
USP40-208ENST00000450966 TRBV7-1A0A0A6YYK4 115 aa10.49□□□□□ -0.73
USP40-208ENST00000450966 MP68P56378 58 aa10.49□□□□□ -0.73
USP40-208ENST00000450966 LRRK1Q38SD2 2015 aa10.49□□□□□ -0.73
USP40-208ENST00000450966 CDK2AP2O75956 126 aa10.49□□□□□ -0.73
USP40-208ENST00000450966 PRB4P10163 310 aaPredicted RBP10.49□□□□□ -0.73
USP40-208ENST00000450966 MDC1Q14676 2089 aaKnown RBP10.48□□□□□ -0.73
USP40-208ENST00000450966 GVINP1Q7Z2Y8 2422 aa10.48□□□□□ -0.73
USP40-208ENST00000450966 SERP1Q9Y6X1 66 aa10.48□□□□□ -0.73
USP40-208ENST00000450966 TEX36Q5VZQ5 186 aa10.48□□□□□ -0.73
USP40-208ENST00000450966 Q8TCH9 128 aa10.48□□□□□ -0.73
USP40-208ENST00000450966 FREM3P0C091 2139 aa10.48□□□□□ -0.73
USP40-208ENST00000450966 WDR81Q562E7 1941 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 RBAKDNA6NC62 111 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 FUSP35637 526 aaKnown RBP eCLIP10.47□□□□□ -0.73
USP40-208ENST00000450966 HEATR5AQ86XA9 2040 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 ZNF503Q96F45 646 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 P0DMU3 169 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 FAM231AP0DMU4 169 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 FAM231CP0DMU5 169 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 PIP4P2Q8N4L2 257 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 THAP8Q8NA92 274 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 KLHL30-AS1Q8NEE0 82 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 Q96MF0 132 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 C5orf63A6NC05 138 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 EFNA2O43921 213 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 TP53TG3Q9ULZ0 132 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 ELANEP08246 267 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 NDPQ00604 133 aa10.47□□□□□ -0.73
USP40-208ENST00000450966 CACNA1EQ15878 2313 aa10.46□□□□□ -0.73
USP40-208ENST00000450966 TRAV23DV6A0A075B6W5 121 aa10.46□□□□□ -0.73
USP40-208ENST00000450966 UBE2E1P51965 193 aa10.46□□□□□ -0.73
USP40-208ENST00000450966 CLEC2BQ92478 149 aa10.46□□□□□ -0.73
USP40-208ENST00000450966 FANCD2OSQ96PS1 177 aa10.46□□□□□ -0.73
USP40-208ENST00000450966 E7EQL1 145 aa10.46□□□□□ -0.73
USP40-208ENST00000450966 DOCK4Q8N1I0 1966 aa10.46□□□□□ -0.74
USP40-208ENST00000450966 PSCAO43653 123 aa10.46□□□□□ -0.74
USP40-208ENST00000450966 PPDPFQ9H3Y8 114 aa10.46□□□□□ -0.74
USP40-208ENST00000450966 NDUFA4L2Q9NRX3 87 aa10.46□□□□□ -0.74
USP40-208ENST00000450966 GREB1Q4ZG55 1949 aa10.46□□□□□ -0.74
USP40-208ENST00000450966 RNF223E7ERA6 249 aa10.46□□□□□ -0.74
USP40-208ENST00000450966 BRD3OSQ6XYD6 125 aa10.46□□□□□ -0.74
USP40-208ENST00000450966 BPESC1Q9GZL8 116 aa10.46□□□□□ -0.74
USP40-208ENST00000450966 DKK4Q9UBT3 224 aa10.46□□□□□ -0.74
USP40-208ENST00000450966 CACNA1GO43497 2377 aa10.46□□□□□ -0.74
USP40-208ENST00000450966 DOCK8Q8NF50 2099 aa10.45□□□□□ -0.74
USP40-208ENST00000450966 ASPHD1Q5U4P2 390 aa10.45□□□□□ -0.74
USP40-208ENST00000450966 DYNAPQ8N1N2 210 aa10.45□□□□□ -0.74
USP40-208ENST00000450966 C2orf91Q6ZV80 131 aa10.45□□□□□ -0.74
USP40-208ENST00000450966 IGHV1OR15-1A0A075B7D0 117 aa10.45□□□□□ -0.74
USP40-208ENST00000450966 TRGV1A0A0A0MS02 117 aa10.45□□□□□ -0.74
USP40-208ENST00000450966 C11orf86A6NJI1 115 aa10.45□□□□□ -0.74
USP40-208ENST00000450966 GATA4P43694 442 aa10.45□□□□□ -0.74
USP40-208ENST00000450966 H3BRN7 92 aa10.44□□□□□ -0.74
USP40-208ENST00000450966 UPK3BQ9BT76 320 aa10.44□□□□□ -0.74
USP40-208ENST00000450966 TRAV12-2A0A075B6T6 113 aa10.44□□□□□ -0.74
USP40-208ENST00000450966 FRMD6-AS1P0C7T7 363 aa10.44□□□□□ -0.74
USP40-208ENST00000450966 IGFL2Q6UWQ7 119 aa10.44□□□□□ -0.74
USP40-208ENST00000450966 SDIM1Q6ZPB5 146 aa10.44□□□□□ -0.74
USP40-208ENST00000450966 Q6ZR03 302 aa10.44□□□□□ -0.74
USP40-208ENST00000450966 TICRRQ7Z2Z1 1910 aa10.44□□□□□ -0.74
USP40-208ENST00000450966 HOXD3P31249 432 aaPredicted RBP10.44□□□□□ -0.74
USP40-208ENST00000450966 CD177Q8N6Q3 437 aa10.44□□□□□ -0.74
USP40-208ENST00000450966 FRMPD3Q5JV73 1810 aa10.44□□□□□ -0.74
USP40-208ENST00000450966 BUB1B-PAK6H3BSN5 160 aa10.44□□□□□ -0.74
USP40-208ENST00000450966 RPL35AP18077 110 aaKnown RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms