RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 HHLA3Q9XRX5 114 aa12.1□□□□□ -0.47
SHQ1-202ENST00000444040 F6UB75 175 aa12.1□□□□□ -0.47
SHQ1-202ENST00000444040 RPL11P62913 178 aaKnown RBP12.1□□□□□ -0.47
SHQ1-202ENST00000444040 ERASQ7Z444 233 aa12.1□□□□□ -0.47
SHQ1-202ENST00000444040 SMIM17P0DL12 118 aa12.09□□□□□ -0.47
SHQ1-202ENST00000444040 PCP2Q8IVA1 136 aa12.09□□□□□ -0.47
SHQ1-202ENST00000444040 DAZ1Q9NQZ3 744 aaKnown RBP12.09□□□□□ -0.47
SHQ1-202ENST00000444040 SIVA1O15304 175 aa12.09□□□□□ -0.47
SHQ1-202ENST00000444040 LAGE3Q14657 143 aa12.09□□□□□ -0.47
SHQ1-202ENST00000444040 OR9G4Q8NGQ1 327 aa12.09□□□□□ -0.47
SHQ1-202ENST00000444040 MRAP2Q96G30 205 aa12.09□□□□□ -0.47
SHQ1-202ENST00000444040 PRSS1P07477 247 aa12.08□□□□□ -0.48
SHQ1-202ENST00000444040 KIR3DS1Q14943 382 aa12.08□□□□□ -0.48
SHQ1-202ENST00000444040 ANXA2RQ3ZCQ2 193 aa12.08□□□□□ -0.48
SHQ1-202ENST00000444040 SMPXQ9UHP9 88 aa12.08□□□□□ -0.48
SHQ1-202ENST00000444040 IGKV3-7A0A075B6H7 116 aa12.08□□□□□ -0.48
SHQ1-202ENST00000444040 SPRY2O43597 315 aa12.08□□□□□ -0.48
SHQ1-202ENST00000444040 VAMP3Q15836 100 aa12.08□□□□□ -0.48
SHQ1-202ENST00000444040 SPOCK3Q9BQ16 436 aa12.08□□□□□ -0.48
SHQ1-202ENST00000444040 ZNF580Q9UK33 172 aa12.08□□□□□ -0.48
SHQ1-202ENST00000444040 TRBV7-9A0A0J9YWB2 115 aa12.07□□□□□ -0.48
SHQ1-202ENST00000444040 EDN2P20800 178 aa12.07□□□□□ -0.48
SHQ1-202ENST00000444040 NMUP48645 174 aa12.07□□□□□ -0.48
SHQ1-202ENST00000444040 SEC11AP67812 179 aa12.07□□□□□ -0.48
SHQ1-202ENST00000444040 ADAMTSL5Q6ZMM2 481 aa12.07□□□□□ -0.48
SHQ1-202ENST00000444040 NRGNQ92686 78 aa12.07□□□□□ -0.48
SHQ1-202ENST00000444040 PIEZO1Q92508 2521 aa12.07□□□□□ -0.48
SHQ1-202ENST00000444040 A1L4Q6 167 aa12.07□□□□□ -0.48
SHQ1-202ENST00000444040 TMEM95Q3KNT9 176 aa12.07□□□□□ -0.48
SHQ1-202ENST00000444040 FOXC2Q99958 501 aa12.07□□□□□ -0.48
SHQ1-202ENST00000444040 SELENOKQ9Y6D0 94 aa12.07□□□□□ -0.48
SHQ1-202ENST00000444040 DOPEY1Q5JWR5 2465 aa12.06□□□□□ -0.48
SHQ1-202ENST00000444040 CBY3A6NI87 242 aa12.06□□□□□ -0.48
SHQ1-202ENST00000444040 M0R381 172 aa12.06□□□□□ -0.48
SHQ1-202ENST00000444040 ATP5LO75964 103 aa12.06□□□□□ -0.48
SHQ1-202ENST00000444040 RNASE4P34096 147 aaKnown RBP12.06□□□□□ -0.48
SHQ1-202ENST00000444040 ASIPP42127 132 aa12.06□□□□□ -0.48
SHQ1-202ENST00000444040 PEF1Q9UBV8 284 aaKnown RBP12.06□□□□□ -0.48
SHQ1-202ENST00000444040 K7EMT4 169 aa12.06□□□□□ -0.48
SHQ1-202ENST00000444040 MED14OSP0DP75 135 aa12.06□□□□□ -0.48
SHQ1-202ENST00000444040 GATA3P23771 443 aa12.06□□□□□ -0.48
SHQ1-202ENST00000444040 SRSF1Q07955 248 aaKnown RBP eCLIP12.06□□□□□ -0.48
SHQ1-202ENST00000444040 IGKV2D-26A0A0A0MRZ7 120 aa12.06□□□□□ -0.48
SHQ1-202ENST00000444040 IGKCP01834 107 aa12.06□□□□□ -0.48
SHQ1-202ENST00000444040 S100A4P26447 101 aaKnown RBP12.06□□□□□ -0.48
SHQ1-202ENST00000444040 PSMB8P28062 276 aa12.06□□□□□ -0.48
SHQ1-202ENST00000444040 PSMG4Q5JS54 123 aa12.06□□□□□ -0.48
SHQ1-202ENST00000444040 SMIM2Q9BVW6 85 aa12.06□□□□□ -0.48
SHQ1-202ENST00000444040 SPG11Q96JI7 2443 aa12.05□□□□□ -0.48
SHQ1-202ENST00000444040 CACNA1AO00555 2505 aa12.05□□□□□ -0.48
SHQ1-202ENST00000444040 RNASE3P12724 160 aaKnown RBP12.05□□□□□ -0.48
SHQ1-202ENST00000444040 RASL10AQ92737 203 aa12.05□□□□□ -0.48
SHQ1-202ENST00000444040 GNRH2O43555 120 aa12.05□□□□□ -0.48
SHQ1-202ENST00000444040 SRD5A1P18405 259 aa12.05□□□□□ -0.48
SHQ1-202ENST00000444040 DSCR9P59020 149 aa12.05□□□□□ -0.48
SHQ1-202ENST00000444040 HSD52Q0P140 79 aa12.05□□□□□ -0.48
SHQ1-202ENST00000444040 C7orf71A4D174 169 aa12.04□□□□□ -0.48
SHQ1-202ENST00000444040 IGHV4-59P01825 116 aa12.04□□□□□ -0.48
SHQ1-202ENST00000444040 MYOZ3Q8TDC0 251 aa12.04□□□□□ -0.48
SHQ1-202ENST00000444040 DCANP1Q8TF63 244 aa12.04□□□□□ -0.48
SHQ1-202ENST00000444040 DPH3P1Q9H4G8 78 aa12.04□□□□□ -0.48
SHQ1-202ENST00000444040 PHLDA3Q9Y5J5 127 aa12.04□□□□□ -0.48
SHQ1-202ENST00000444040 DEFB112Q30KQ8 113 aa12.04□□□□□ -0.48
SHQ1-202ENST00000444040 C14orf178Q8N769 122 aaPredicted RBP12.04□□□□□ -0.48
SHQ1-202ENST00000444040 CELSR2Q9HCU4 2923 aa12.04□□□□□ -0.48
SHQ1-202ENST00000444040 TRAV8-6A0A0B4J262 113 aa12.03□□□□□ -0.48
SHQ1-202ENST00000444040 TMEM8BA6NDV4 472 aa12.03□□□□□ -0.48
SHQ1-202ENST00000444040 DPM2O94777 84 aa12.03□□□□□ -0.48
SHQ1-202ENST00000444040 AMMECR1LQ6DCA0 310 aa12.03□□□□□ -0.48
SHQ1-202ENST00000444040 OR4C5Q8NGB2 326 aa12.03□□□□□ -0.48
SHQ1-202ENST00000444040 A0A096LNT2 108 aa12.03□□□□□ -0.48
SHQ1-202ENST00000444040 KLLNB2CW77 178 aa12.03□□□□□ -0.48
SHQ1-202ENST00000444040 FLNCQ14315 2725 aa12.02□□□□□ -0.48
SHQ1-202ENST00000444040 SLC25A16P16260 332 aa12.02□□□□□ -0.48
SHQ1-202ENST00000444040 SUMO2P61956 95 aaKnown RBP12.02□□□□□ -0.48
SHQ1-202ENST00000444040 C10orf99Q6UWK7 81 aa12.02□□□□□ -0.48
SHQ1-202ENST00000444040 C20orf78Q9BR46 151 aa12.02□□□□□ -0.48
SHQ1-202ENST00000444040 MRPL35Q9NZE8 188 aaKnown RBP12.02□□□□□ -0.48
SHQ1-202ENST00000444040 USP9XQ93008 2570 aaPredicted RBP12.02□□□□□ -0.48
SHQ1-202ENST00000444040 RNF223E7ERA6 249 aa12.02□□□□□ -0.49
SHQ1-202ENST00000444040 K7EP13 123 aa12.02□□□□□ -0.49
SHQ1-202ENST00000444040 ZC2HC1BQ5TFG8 222 aa12.01□□□□□ -0.49
SHQ1-202ENST00000444040 LINC01356Q8N9X3 169 aa12.01□□□□□ -0.49
SHQ1-202ENST00000444040 RPL39LQ96EH5 51 aaKnown RBP12.01□□□□□ -0.49
SHQ1-202ENST00000444040 TTTY13Q9BZ97 58 aa12.01□□□□□ -0.49
SHQ1-202ENST00000444040 IGSF10Q6WRI0 2623 aa12.01□□□□□ -0.49
SHQ1-202ENST00000444040 A0A087WX48 190 aa12.01□□□□□ -0.49
SHQ1-202ENST00000444040 GTSCR1Q86UQ5 136 aa12.01□□□□□ -0.49
SHQ1-202ENST00000444040 NXPH4O95158 308 aa12.01□□□□□ -0.49
SHQ1-202ENST00000444040 A6NDN8 102 aa12□□□□□ -0.49
SHQ1-202ENST00000444040 H3BRM9 83 aa12□□□□□ -0.49
SHQ1-202ENST00000444040 ID1P41134 155 aa12□□□□□ -0.49
SHQ1-202ENST00000444040 POM121L12Q8N7R1 296 aa12□□□□□ -0.49
SHQ1-202ENST00000444040 RNASE8Q8TDE3 154 aaKnown RBP12□□□□□ -0.49
SHQ1-202ENST00000444040 TMEM160Q9NX00 188 aa12□□□□□ -0.49
SHQ1-202ENST00000444040 ORMDL2Q53FV1 153 aa12□□□□□ -0.49
SHQ1-202ENST00000444040 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.99□□□□□ -0.491e-8■■■■■ 30
SHQ1-202ENST00000444040 AP1S3Q96PC3 154 aa11.99□□□□□ -0.49
SHQ1-202ENST00000444040 HIGD1BQ9P298 99 aa11.99□□□□□ -0.49
SHQ1-202ENST00000444040 KIF25-AS1Q9Y6Z4 181 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 145.5 ms