RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 SELENOKQ9Y6D0 94 aa8.98□□□□□ -0.97
CD44-209ENST00000433892 IGKV3-7A0A075B6H7 116 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 IGHV4-4A0A075B6R2 117 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 H3BRM9 83 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 RNF151Q2KHN1 245 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 RAB37Q96AX2 223 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 AP1S3Q96PC3 154 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 ATP6V0BQ99437 205 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 KLK15Q9H2R5 256 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 CST9LQ9H4G1 147 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 GAGE12BA1L429 117 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 GAGE10A6NGK3 116 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 C9orf118A6NHY6 69 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 H3BUT2 72 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 M0R381 172 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 DPM2O94777 84 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 PCP4P48539 62 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 CRIP2P52943 208 aaPredicted RBP8.97□□□□□ -0.97
CD44-209ENST00000433892 LCNL1Q6ZST4 164 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 ZFAND2AQ8N6M9 145 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 MYOZ3Q8TDC0 251 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 JMJD8Q96S16 334 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 TMEM160Q9NX00 188 aa8.97□□□□□ -0.97
CD44-209ENST00000433892 PKD1L2Q7Z442 2459 aa8.96□□□□□ -0.97
CD44-209ENST00000433892 F6UB75 175 aa8.96□□□□□ -0.97
CD44-209ENST00000433892 NDUFA4O00483 81 aa8.96□□□□□ -0.97
CD44-209ENST00000433892 ATP5LO75964 103 aa8.96□□□□□ -0.97
CD44-209ENST00000433892 ZC2HC1BQ5TFG8 222 aa8.96□□□□□ -0.97
CD44-209ENST00000433892 OR10J6PQ8NGY7 276 aa8.96□□□□□ -0.97
CD44-209ENST00000433892 LINC00477Q96M19 166 aa8.96□□□□□ -0.97
CD44-209ENST00000433892 MRPL35Q9NZE8 188 aaKnown RBP8.96□□□□□ -0.97
CD44-209ENST00000433892 PRSS47A8MTI9 375 aa8.96□□□□□ -0.98
CD44-209ENST00000433892 H3BUX3 64 aa8.96□□□□□ -0.98
CD44-209ENST00000433892 SOCS3O14543 225 aa8.96□□□□□ -0.98
CD44-209ENST00000433892 BLCAPP62952 87 aa8.96□□□□□ -0.98
CD44-209ENST00000433892 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.96□□□□□ -0.98
CD44-209ENST00000433892 Q6ZS46 218 aa8.96□□□□□ -0.98
CD44-209ENST00000433892 MEGF9Q9H1U4 602 aa8.96□□□□□ -0.98
CD44-209ENST00000433892 LENEPQ9Y5L5 61 aa8.96□□□□□ -0.98
CD44-209ENST00000433892 PF4V1P10720 104 aa8.95□□□□□ -0.98
CD44-209ENST00000433892 S100A4P26447 101 aaKnown RBP8.95□□□□□ -0.98
CD44-209ENST00000433892 CDKN1BP46527 198 aa8.95□□□□□ -0.98
CD44-209ENST00000433892 SRSF1Q07955 248 aaKnown RBP eCLIP8.95□□□□□ -0.98
CD44-209ENST00000433892 OCIAD2Q56VL3 154 aa8.95□□□□□ -0.98
CD44-209ENST00000433892 PIMREGQ9BSJ6 248 aa8.95□□□□□ -0.98
CD44-209ENST00000433892 SMPXQ9UHP9 88 aa8.95□□□□□ -0.98
CD44-209ENST00000433892 TRAV21A0A0B4J279 112 aa8.94□□□□□ -0.98
CD44-209ENST00000433892 A0A0G2JLM5 398 aa8.94□□□□□ -0.98
CD44-209ENST00000433892 OVOL1O14753 267 aa8.94□□□□□ -0.98
CD44-209ENST00000433892 IGHG2P01859 326 aa8.94□□□□□ -0.98
CD44-209ENST00000433892 GCSHP23434 173 aa8.94□□□□□ -0.98
CD44-209ENST00000433892 RNASE4P34096 147 aaKnown RBP8.94□□□□□ -0.98
CD44-209ENST00000433892 C14orf178Q8N769 122 aaPredicted RBP8.94□□□□□ -0.98
CD44-209ENST00000433892 MRAP2Q96G30 205 aa8.94□□□□□ -0.98
CD44-209ENST00000433892 PRORYQ9H606 182 aa8.94□□□□□ -0.98
CD44-209ENST00000433892 ANXA2RQ3ZCQ2 193 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 PSMG4Q5JS54 123 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 USMG5Q96IX5 58 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 CCL19Q99731 98 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 CHAC1Q9BUX1 264 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 SMIM2Q9BVW6 85 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 PHLDA3Q9Y5J5 127 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 TRBV25-1A0A075B6N4 114 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 GNRH2O43555 120 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 SRD5A1P18405 259 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 ASIPP42127 132 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 FXYD2P54710 66 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 UFSP1Q6NVU6 142 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 C10orf105Q8TEF2 133 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 RASL10AQ92737 203 aa8.93□□□□□ -0.98
CD44-209ENST00000433892 RPL39LQ96EH5 51 aaKnown RBP8.93□□□□□ -0.98
CD44-209ENST00000433892 A0A087WX48 190 aa8.92□□□□□ -0.98
CD44-209ENST00000433892 A6NDX4 124 aa8.92□□□□□ -0.98
CD44-209ENST00000433892 GTF2H5Q6ZYL4 71 aa8.92□□□□□ -0.98
CD44-209ENST00000433892 RHPN1-AS1Q9BWJ2 59 aa8.92□□□□□ -0.98
CD44-209ENST00000433892 CSPG4Q6UVK1 2322 aa8.92□□□□□ -0.98
CD44-209ENST00000433892 USP9XQ93008 2570 aaPredicted RBP8.92□□□□□ -0.98
CD44-209ENST00000433892 ZANQ9Y493 2812 aa8.92□□□□□ -0.98
CD44-209ENST00000433892 IGHV4-30-2A0A087WSY4 118 aa8.92□□□□□ -0.98
CD44-209ENST00000433892 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.92□□□□□ -0.98
CD44-209ENST00000433892 SUMO2P61956 95 aaKnown RBP8.92□□□□□ -0.98
CD44-209ENST00000433892 HIGD1BQ9P298 99 aa8.92□□□□□ -0.98
CD44-209ENST00000433892 CENPEQ02224 2701 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 MGPP08493 103 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 EDN2P20800 178 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 CLEC2AQ6UVW9 174 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 MAPKAPK5-AS1Q8N8E1 139 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 FAM19A4Q96LR4 140 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 DPH3P1Q9H4G8 78 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 A0A1W2PPM0 123 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 H3BUA1 57 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 K7EMI3 77 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 K7EP34 96 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 K7ERJ3 54 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 SMIM13P0DJ93 91 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 ATP5J2P56134 94 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 SPOCK3Q9BQ16 436 aa8.91□□□□□ -0.98
CD44-209ENST00000433892 SCGB3A1Q96QR1 104 aa8.9□□□□□ -0.98
CD44-209ENST00000433892 VPS25Q9BRG1 176 aa8.9□□□□□ -0.98
CD44-209ENST00000433892 DAZ1Q9NQZ3 744 aaKnown RBP8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 126.6 ms