RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ZNF493Q6ZR52 646 aa7.37□□□□□ -1.23
CD44-207ENST00000425428 FAM231DQ6ZW35 169 aa7.37□□□□□ -1.23
CD44-207ENST00000425428 BORCS7Q96B45 105 aa7.37□□□□□ -1.23
CD44-207ENST00000425428 ANAPC16Q96DE5 110 aa7.37□□□□□ -1.23
CD44-207ENST00000425428 C16orf74Q96GX8 76 aa7.37□□□□□ -1.23
CD44-207ENST00000425428 B9D2Q9BPU9 175 aa7.37□□□□□ -1.23
CD44-207ENST00000425428 RPP21Q9H633 154 aaKnown RBP7.37□□□□□ -1.23
CD44-207ENST00000425428 OSTCQ9NRP0 149 aa7.37□□□□□ -1.23
CD44-207ENST00000425428 NBEAL1Q6ZS30 2694 aa7.37□□□□□ -1.23
CD44-207ENST00000425428 ZNF324O75467 553 aaPredicted RBP7.36□□□□□ -1.23
CD44-207ENST00000425428 NUDT10Q8NFP7 164 aa7.36□□□□□ -1.23
CD44-207ENST00000425428 ISOC2Q96AB3 205 aa7.36□□□□□ -1.23
CD44-207ENST00000425428 NUDT11Q96G61 164 aa7.36□□□□□ -1.23
CD44-207ENST00000425428 NEU1Q99519 415 aa7.36□□□□□ -1.23
CD44-207ENST00000425428 LINC00467Q9BRT7 94 aa7.36□□□□□ -1.23
CD44-207ENST00000425428 IGLV2-8P01709 118 aa7.36□□□□□ -1.23
CD44-207ENST00000425428 ZNF80P51504 273 aaPredicted RBP7.36□□□□□ -1.23
CD44-207ENST00000425428 KIR3DS1Q14943 382 aa7.36□□□□□ -1.23
CD44-207ENST00000425428 RHEBQ15382 184 aa7.36□□□□□ -1.23
CD44-207ENST00000425428 ANXA2RQ3ZCQ2 193 aa7.36□□□□□ -1.23
CD44-207ENST00000425428 LINC01559Q495D7 138 aa7.36□□□□□ -1.23
CD44-207ENST00000425428 PRR9Q5T870 116 aa7.36□□□□□ -1.23
CD44-207ENST00000425428 ZNF705AQ6ZN79 300 aaPredicted RBP7.36□□□□□ -1.23
CD44-207ENST00000425428 CSNK1G2-AS1Q8NCQ2 148 aa7.36□□□□□ -1.23
CD44-207ENST00000425428 TMEM263Q8WUH6 116 aaKnown RBP7.36□□□□□ -1.23
CD44-207ENST00000425428 RNASE7Q9H1E1 156 aaKnown RBP7.36□□□□□ -1.23
CD44-207ENST00000425428 CARHSP1Q9Y2V2 147 aaKnown RBP7.36□□□□□ -1.23
CD44-207ENST00000425428 TMSB15BA0A087X1C1 80 aa7.35□□□□□ -1.23
CD44-207ENST00000425428 TEX48A0A1B0GUV7 120 aa7.35□□□□□ -1.23
CD44-207ENST00000425428 A0A1W2PPQ1 181 aa7.35□□□□□ -1.23
CD44-207ENST00000425428 K7EN84 100 aa7.35□□□□□ -1.23
CD44-207ENST00000425428 TDRG1Q3Y452 100 aa7.35□□□□□ -1.23
CD44-207ENST00000425428 CT83Q5H943 113 aa7.35□□□□□ -1.23
CD44-207ENST00000425428 SBSPONQ8IVN8 264 aa7.35□□□□□ -1.23
CD44-207ENST00000425428 C1orf158Q8N1D5 194 aa7.35□□□□□ -1.23
CD44-207ENST00000425428 CTDSP1Q9GZU7 261 aa7.35□□□□□ -1.23
CD44-207ENST00000425428 C19orf71A6NCJ1 209 aa7.34□□□□□ -1.23
CD44-207ENST00000425428 CXCL1P09341 107 aa7.34□□□□□ -1.23
CD44-207ENST00000425428 GIG44P09565 113 aaPredicted RBP7.34□□□□□ -1.23
CD44-207ENST00000425428 S100A1P23297 94 aa7.34□□□□□ -1.23
CD44-207ENST00000425428 S100PP25815 95 aa7.34□□□□□ -1.23
CD44-207ENST00000425428 C10orf91Q5T1B1 145 aa7.34□□□□□ -1.23
CD44-207ENST00000425428 KCNIP4Q6PIL6 250 aa7.34□□□□□ -1.23
CD44-207ENST00000425428 SYT8Q8NBV8 401 aa7.34□□□□□ -1.23
CD44-207ENST00000425428 SPXQ9BT56 116 aa7.34□□□□□ -1.23
CD44-207ENST00000425428 TPPP3Q9BW30 176 aa7.34□□□□□ -1.23
CD44-207ENST00000425428 PHLDA3Q9Y5J5 127 aa7.34□□□□□ -1.23
CD44-207ENST00000425428 F2Z2F3 143 aa7.33□□□□□ -1.24
CD44-207ENST00000425428 CRIP1P50238 77 aa7.33□□□□□ -1.24
CD44-207ENST00000425428 RPS10P5Q9NQ39 176 aa7.33□□□□□ -1.24
CD44-207ENST00000425428 TIMM8BQ9Y5J9 83 aaPredicted RBP7.33□□□□□ -1.24
CD44-207ENST00000425428 TYMSP04818 313 aa7.33□□□□□ -1.24
CD44-207ENST00000425428 ADCYAP1P18509 176 aa7.33□□□□□ -1.24
CD44-207ENST00000425428 EMP1P54849 157 aa7.33□□□□□ -1.24
CD44-207ENST00000425428 SMIM15Q7Z3B0 74 aa7.33□□□□□ -1.24
CD44-207ENST00000425428 CLRN3Q8NCR9 226 aa7.33□□□□□ -1.24
CD44-207ENST00000425428 TM2D3Q9BRN9 247 aa7.33□□□□□ -1.24
CD44-207ENST00000425428 OVOL2Q9BRP0 275 aa7.33□□□□□ -1.24
CD44-207ENST00000425428 GFRA4Q9GZZ7 299 aa7.33□□□□□ -1.24
CD44-207ENST00000425428 GRIFINA4D1Z8 144 aa7.32□□□□□ -1.24
CD44-207ENST00000425428 FAM231BA6NCW3 169 aa7.32□□□□□ -1.24
CD44-207ENST00000425428 GNRH2O43555 120 aa7.32□□□□□ -1.24
CD44-207ENST00000425428 MED14OSP0DP75 135 aa7.32□□□□□ -1.24
CD44-207ENST00000425428 RNF212Q495C1 297 aa7.32□□□□□ -1.24
CD44-207ENST00000425428 SPANXN1Q5VSR9 72 aa7.32□□□□□ -1.24
CD44-207ENST00000425428 FER1L6-AS1Q8NA97 138 aa7.32□□□□□ -1.24
CD44-207ENST00000425428 TSKUQ8WUA8 353 aa7.32□□□□□ -1.24
CD44-207ENST00000425428 BTF3L4Q96K17 158 aa7.32□□□□□ -1.24
CD44-207ENST00000425428 IL36BQ9NZH7 164 aa7.32□□□□□ -1.24
CD44-207ENST00000425428 NAT8BQ9UHF3 227 aa7.32□□□□□ -1.24
CD44-207ENST00000425428 IGKV3D-20A0A0C4DH25 116 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 RBMY1A1P0DJD3 496 aaKnown RBP7.31□□□□□ -1.24
CD44-207ENST00000425428 RBMY1CP0DJD4 496 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 CACNG7P62955 275 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 RBMY1FQ15415 496 aaKnown RBP7.31□□□□□ -1.24
CD44-207ENST00000425428 ZFP82Q8N141 532 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 A0A087WWC5 75 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 IGHV3-16A0A0C4DH30 117 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 IGHV4-28A0A0C4DH34 117 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 C7orf77A4D0Y5 90 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 LYRM9A8MSI8 78 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 H3BVH4 76 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 M0R2P5 195 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 ARMS2P0C7Q2 107 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 SPART-AS1P0CW21 52 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 TCL1AP56279 114 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 DNLZQ5SXM8 178 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 GSN-AS1Q9NRJ2 163 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 TMEM242Q9NWH2 141 aa7.31□□□□□ -1.24
CD44-207ENST00000425428 DNHD1Q96M86 4753 aa7.3□□□□□ -1.24
CD44-207ENST00000425428 S100A8P05109 93 aa7.3□□□□□ -1.24
CD44-207ENST00000425428 SMIM17P0DL12 118 aa7.3□□□□□ -1.24
CD44-207ENST00000425428 LGALS9BQ3B8N2 356 aa7.3□□□□□ -1.24
CD44-207ENST00000425428 RNASE8Q8TDE3 154 aaKnown RBP7.3□□□□□ -1.24
CD44-207ENST00000425428 IMMP2LQ96T52 175 aa7.3□□□□□ -1.24
CD44-207ENST00000425428 NDUFAF3Q9BU61 184 aa7.3□□□□□ -1.24
CD44-207ENST00000425428 RETNQ9HD89 108 aa7.3□□□□□ -1.24
CD44-207ENST00000425428 NOP10Q9NPE3 64 aaKnown RBP7.3□□□□□ -1.24
CD44-207ENST00000425428 C11orf21Q9P2W6 132 aa7.3□□□□□ -1.24
CD44-207ENST00000425428 TP53TG3Q9ULZ0 132 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms