RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 FOXI2Q6ZQN5 318 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 PTH2Q96A98 100 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 SPINK13Q1W4C9 94 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 ZC2HC1AQ96GY0 325 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 FAM236DA0A1B0GTK5 79 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 WIPF3A6NGB9 483 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 FAM236CP0DP71 79 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 GATA3P23771 443 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 COA6Q5JTJ3 125 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 LINC01356Q8N9X3 169 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 SCRT2Q9NQ03 307 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 NDUFA4O00483 81 aa8.15□□□□□ -1.1
LIMCH1-203ENST00000396595 ZNF524Q96C55 264 aa8.15□□□□□ -1.1
LIMCH1-203ENST00000396595 ORMDL1Q9P0S3 153 aa8.15□□□□□ -1.1
LIMCH1-203ENST00000396595 VWC2Q2TAL6 325 aa8.15□□□□□ -1.1
LIMCH1-203ENST00000396595 WIPF2Q8TF74 440 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-203ENST00000396595 NDUFA12Q9UI09 145 aa8.15□□□□□ -1.1
LIMCH1-203ENST00000396595 KLF2Q9Y5W3 355 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-203ENST00000396595 CDPF1Q6NVV7 123 aa8.15□□□□□ -1.1
LIMCH1-203ENST00000396595 VOPP1Q96AW1 172 aa8.15□□□□□ -1.1
LIMCH1-203ENST00000396595 C20orf78Q9BR46 151 aa8.15□□□□□ -1.1
LIMCH1-203ENST00000396595 IGLV1-44P01699 117 aa8.15□□□□□ -1.11
LIMCH1-203ENST00000396595 RETNQ9HD89 108 aa8.15□□□□□ -1.11
LIMCH1-203ENST00000396595 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.15□□□□□ -1.11
LIMCH1-203ENST00000396595 NDUFV3P56181 108 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 ATP6V0E2Q8NHE4 81 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 TRBV25-1A0A075B6N4 114 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 C8orf31Q8N9H6 132 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 G3V318 75 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 CRYGBP07316 175 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 GNLYP22749 145 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 C14orf132Q9NPU4 83 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 IGHV1-69DA0A0B4J2H0 117 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 IGHV1-69P01742 117 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 DEFB130BP0DP73 79 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 DEFB130AP0DP74 79 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 TRPM7Q96QT4 1865 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 IGLV3-9A0A075B6K5 115 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 ZNF503-AS2A6NEH8 195 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 UQCRQO14949 82 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 NDUFS7O75251 213 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 LTAP01374 205 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 MSMBP08118 114 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 ZNF134P52741 427 aa8.14□□□□□ -1.11
LIMCH1-203ENST00000396595 TRAV26-2A0A0B4J265 109 aa8.13□□□□□ -1.11
LIMCH1-203ENST00000396595 TPSG1Q9NRR2 321 aa8.13□□□□□ -1.11
LIMCH1-203ENST00000396595 F5H768 121 aa8.13□□□□□ -1.11
LIMCH1-203ENST00000396595 K7EN84 100 aa8.13□□□□□ -1.11
LIMCH1-203ENST00000396595 WFDC2Q14508 124 aa8.13□□□□□ -1.11
LIMCH1-203ENST00000396595 ZNF747Q9BV97 191 aa8.13□□□□□ -1.11
LIMCH1-203ENST00000396595 KLK9Q9UKQ9 250 aa8.13□□□□□ -1.11
LIMCH1-203ENST00000396595 PLXNA4Q9HCM2 1894 aa8.13□□□□□ -1.11
LIMCH1-203ENST00000396595 J3QQQ9 107 aa8.13□□□□□ -1.11
LIMCH1-203ENST00000396595 XCL2Q9UBD3 114 aa8.13□□□□□ -1.11
LIMCH1-203ENST00000396595 RUSC1-AS1Q66K80 236 aa8.12□□□□□ -1.11
LIMCH1-203ENST00000396595 CR1LQ2VPA4 569 aa8.12□□□□□ -1.11
LIMCH1-203ENST00000396595 RNF114Q9Y508 228 aa8.12□□□□□ -1.11
LIMCH1-203ENST00000396595 UNQ6494/PRO21346Q6UXR6 183 aa8.12□□□□□ -1.11
LIMCH1-203ENST00000396595 Q6ZUT4 128 aa8.12□□□□□ -1.11
LIMCH1-203ENST00000396595 IGFBPL1Q8WX77 278 aa8.12□□□□□ -1.11
LIMCH1-203ENST00000396595 K7EMI3 77 aa8.12□□□□□ -1.11
LIMCH1-203ENST00000396595 IGFL3Q6UXB1 125 aa8.12□□□□□ -1.11
LIMCH1-203ENST00000396595 UBE2DNLQ8IWF7 75 aa8.12□□□□□ -1.11
LIMCH1-203ENST00000396595 WFDC11Q8NEX6 87 aa8.12□□□□□ -1.11
LIMCH1-203ENST00000396595 ZNF491Q8N8L2 437 aa8.11□□□□□ -1.11
LIMCH1-203ENST00000396595 FNDC1Q4ZHG4 1894 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-203ENST00000396595 LINC01619G3V211 115 aa8.11□□□□□ -1.11
LIMCH1-203ENST00000396595 KAAG1Q9UBP8 84 aa8.11□□□□□ -1.11
LIMCH1-203ENST00000396595 RLFQ13129 1914 aa8.11□□□□□ -1.11
LIMCH1-203ENST00000396595 IGHV3-16A0A0C4DH30 117 aa8.11□□□□□ -1.11
LIMCH1-203ENST00000396595 PFN2P35080 140 aa8.11□□□□□ -1.11
LIMCH1-203ENST00000396595 SEC61GP60059 68 aa8.11□□□□□ -1.11
LIMCH1-203ENST00000396595 C3orf22Q8N5N4 141 aa8.11□□□□□ -1.11
LIMCH1-203ENST00000396595 DKK2Q9UBU2 259 aa8.11□□□□□ -1.11
LIMCH1-203ENST00000396595 ZNF493Q6ZR52 646 aa8.11□□□□□ -1.11
LIMCH1-203ENST00000396595 ZNRF2Q8NHG8 242 aa8.1□□□□□ -1.11
LIMCH1-203ENST00000396595 M0QXV9 152 aa8.1□□□□□ -1.11
LIMCH1-203ENST00000396595 PCNX1Q96RV3 2341 aa8.1□□□□□ -1.11
LIMCH1-203ENST00000396595 MYLKQ15746 1914 aa8.1□□□□□ -1.11
LIMCH1-203ENST00000396595 LY6G6EA0A0G2JKS1 128 aa8.1□□□□□ -1.11
LIMCH1-203ENST00000396595 ANKRD39Q53RE8 183 aa8.1□□□□□ -1.11
LIMCH1-203ENST00000396595 U3KQA8 63 aa8.1□□□□□ -1.11
LIMCH1-203ENST00000396595 BUB3O43684 328 aa8.1□□□□□ -1.11
LIMCH1-203ENST00000396595 HERVK_113P63121 156 aa8.1□□□□□ -1.11
LIMCH1-203ENST00000396595 Q71RC1 249 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-203ENST00000396595 LENEPQ9Y5L5 61 aa8.1□□□□□ -1.11
LIMCH1-203ENST00000396595 MRPL53Q96EL3 112 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-203ENST00000396595 ZNF561-AS1K7EIQ3 104 aa8.09□□□□□ -1.11
LIMCH1-203ENST00000396595 CRYGCP07315 174 aa8.09□□□□□ -1.11
LIMCH1-203ENST00000396595 FAM120AOSQ5T036 256 aa8.09□□□□□ -1.11
LIMCH1-203ENST00000396595 ZFP2Q6ZN57 461 aa8.09□□□□□ -1.11
LIMCH1-203ENST00000396595 MALRD1Q5VYJ5 2156 aa8.09□□□□□ -1.11
LIMCH1-203ENST00000396595 PROP1O75360 226 aa8.09□□□□□ -1.11
LIMCH1-203ENST00000396595 RHOHQ15669 191 aa8.09□□□□□ -1.11
LIMCH1-203ENST00000396595 IGHV7-4-1A0A0J9YVY3 117 aa8.08□□□□□ -1.12
LIMCH1-203ENST00000396595 THSD7BQ9C0I4 1608 aa8.08□□□□□ -1.12
LIMCH1-203ENST00000396595 PSCAO43653 123 aa8.08□□□□□ -1.12
LIMCH1-203ENST00000396595 DIAPH2-AS1Q14236 149 aa8.08□□□□□ -1.12
LIMCH1-203ENST00000396595 LINC01620Q4KN68 170 aa8.08□□□□□ -1.12
LIMCH1-203ENST00000396595 LINC01545Q5VT33 79 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms