RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 Q6ZTI0 123 aa15.33■□□□□ 0.04
CLN3-207ENST00000395653 KCNS1Q96KK3 526 aa15.33■□□□□ 0.04
CLN3-207ENST00000395653 TRBV6-1A0A0K0K1D8 114 aa15.32■□□□□ 0.04
CLN3-207ENST00000395653 SPINK4O60575 86 aa15.32■□□□□ 0.04
CLN3-207ENST00000395653 CCL20P78556 96 aa15.32■□□□□ 0.04
CLN3-207ENST00000395653 TMEM183BQ1AE95 376 aa15.32■□□□□ 0.04
CLN3-207ENST00000395653 TMEM183AQ8IXX5 376 aa15.32■□□□□ 0.04
CLN3-207ENST00000395653 C18orf15Q96N68 181 aa15.32■□□□□ 0.04
CLN3-207ENST00000395653 ZFP30Q9Y2G7 519 aa15.32■□□□□ 0.04
CLN3-207ENST00000395653 AKR1C3P42330 323 aa15.31■□□□□ 0.04
CLN3-207ENST00000395653 LGALS9BQ3B8N2 356 aa15.31■□□□□ 0.04
CLN3-207ENST00000395653 MDFICQ9P1T7 246 aa15.31■□□□□ 0.04
CLN3-207ENST00000395653 TRGV1A0A0A0MS02 117 aa15.3■□□□□ 0.04
CLN3-207ENST00000395653 TMEM88Q6PEY1 159 aa15.3■□□□□ 0.04
CLN3-207ENST00000395653 SDF2L1Q9HCN8 221 aa15.3■□□□□ 0.04
CLN3-207ENST00000395653 GNG13Q9P2W3 67 aa15.3■□□□□ 0.04
CLN3-207ENST00000395653 F5H768 121 aa15.29■□□□□ 0.04
CLN3-207ENST00000395653 COX8CQ7Z4L0 72 aa15.29■□□□□ 0.04
CLN3-207ENST00000395653 SPXQ9BT56 116 aa15.29■□□□□ 0.04
CLN3-207ENST00000395653 GNRH2O43555 120 aa15.28■□□□□ 0.04
CLN3-207ENST00000395653 TYMSP04818 313 aa15.28■□□□□ 0.04
CLN3-207ENST00000395653 S100A9P06702 114 aaKnown RBP15.28■□□□□ 0.04
CLN3-207ENST00000395653 ALKAL2Q6UX46 152 aa15.28■□□□□ 0.04
CLN3-207ENST00000395653 TXNDC17Q9BRA2 123 aa15.28■□□□□ 0.04
CLN3-207ENST00000395653 C11orf21Q9P2W6 132 aa15.28■□□□□ 0.04
CLN3-207ENST00000395653 TRGV2A0A075B6R0 118 aa15.27■□□□□ 0.04
CLN3-207ENST00000395653 IGHV3-16A0A0C4DH30 117 aa15.27■□□□□ 0.04
CLN3-207ENST00000395653 SCO2A0A1W2PP80 73 aa15.27■□□□□ 0.04
CLN3-207ENST00000395653 LTAP01374 205 aa15.27■□□□□ 0.04
CLN3-207ENST00000395653 BOLA1Q9Y3E2 137 aa15.27■□□□□ 0.04
CLN3-207ENST00000395653 C15orf53Q8NAA6 179 aa15.26■□□□□ 0.03
CLN3-207ENST00000395653 MRPL16Q9NX20 251 aaKnown RBP15.26■□□□□ 0.03
CLN3-207ENST00000395653 FABP5P3A8MUU1 101 aa15.26■□□□□ 0.03
CLN3-207ENST00000395653 IFNA1P01562 189 aa15.26■□□□□ 0.03
CLN3-207ENST00000395653 ZC2HC1AQ96GY0 325 aa15.26■□□□□ 0.03
CLN3-207ENST00000395653 C11orf52Q96A22 123 aa15.25■□□□□ 0.03
CLN3-207ENST00000395653 VPS13DQ5THJ4 4388 aa15.24■□□□□ 0.03
CLN3-207ENST00000395653 P0DMU3 169 aa15.24■□□□□ 0.03
CLN3-207ENST00000395653 FAM231AP0DMU4 169 aa15.24■□□□□ 0.03
CLN3-207ENST00000395653 FAM231CP0DMU5 169 aa15.24■□□□□ 0.03
CLN3-207ENST00000395653 HOXA5P20719 270 aa15.24■□□□□ 0.03
CLN3-207ENST00000395653 BLOC1S1P78537 153 aa15.24■□□□□ 0.03
CLN3-207ENST00000395653 RASL10AQ92737 203 aa15.24■□□□□ 0.03
CLN3-207ENST00000395653 BCL2P10415 239 aa15.23■□□□□ 0.03
CLN3-207ENST00000395653 CRIP1P50238 77 aa15.23■□□□□ 0.03
CLN3-207ENST00000395653 MEF2BQ02080 365 aaPredicted RBP15.23■□□□□ 0.03
CLN3-207ENST00000395653 OR5I1Q13606 314 aa15.23■□□□□ 0.03
CLN3-207ENST00000395653 HYDINQ4G0P3 5121 aa15.23■□□□□ 0.03
CLN3-207ENST00000395653 M0R2P5 195 aa15.22■□□□□ 0.03
CLN3-207ENST00000395653 TAGLN2P37802 199 aaKnown RBP15.22■□□□□ 0.03
CLN3-207ENST00000395653 FAM162BQ5T6X4 162 aa15.22■□□□□ 0.03
CLN3-207ENST00000395653 IGKV3D-20A0A0C4DH25 116 aa15.21■□□□□ 0.03
CLN3-207ENST00000395653 ZNF674Q2M3X9 581 aa15.21■□□□□ 0.03
CLN3-207ENST00000395653 TRAV26-1A0A087WT03 109 aa15.2■□□□□ 0.02
CLN3-207ENST00000395653 PDE6DO43924 150 aa15.2■□□□□ 0.02
CLN3-207ENST00000395653 SH2D1AO60880 128 aa15.2■□□□□ 0.02
CLN3-207ENST00000395653 RPL35P42766 123 aaKnown RBP15.2■□□□□ 0.02
CLN3-207ENST00000395653 BAGE2Q86Y30 109 aa15.2■□□□□ 0.02
CLN3-207ENST00000395653 C9orf85Q96MD7 179 aa15.2■□□□□ 0.02
CLN3-207ENST00000395653 MLST8Q9BVC4 326 aa15.2■□□□□ 0.02
CLN3-207ENST00000395653 VAX2Q9UIW0 290 aa15.2■□□□□ 0.02
CLN3-207ENST00000395653 H3BNG1 76 aa15.19■□□□□ 0.02
CLN3-207ENST00000395653 NHLRC2Q8NBF2 726 aa15.19■□□□□ 0.02
CLN3-207ENST00000395653 LYPD6BQ8NI32 183 aa15.19■□□□□ 0.02
CLN3-207ENST00000395653 ORM1P02763 201 aa15.18■□□□□ 0.02
CLN3-207ENST00000395653 DERL1Q9BUN8 251 aa15.18■□□□□ 0.02
CLN3-207ENST00000395653 B4DEV8 164 aa15.17■□□□□ 0.02
CLN3-207ENST00000395653 NUDT3O95989 172 aa15.17■□□□□ 0.02
CLN3-207ENST00000395653 IGHV3-53P01767 116 aa15.17■□□□□ 0.02
CLN3-207ENST00000395653 RNASE3P12724 160 aaKnown RBP15.17■□□□□ 0.02
CLN3-207ENST00000395653 MUC4Q99102 2169 aa15.17■□□□□ 0.02
CLN3-207ENST00000395653 KRBOX1C9JBD0 128 aa15.17■□□□□ 0.02
CLN3-207ENST00000395653 ASIPP42127 132 aa15.17■□□□□ 0.02
CLN3-207ENST00000395653 LINC01559Q495D7 138 aa15.17■□□□□ 0.02
CLN3-207ENST00000395653 POM121L12Q8N7R1 296 aa15.17■□□□□ 0.02
CLN3-207ENST00000395653 PTH2Q96A98 100 aa15.17■□□□□ 0.02
CLN3-207ENST00000395653 TRAV4A0A0B4J268 109 aa15.16■□□□□ 0.02
CLN3-207ENST00000395653 A0A0J9YY99 117 aa15.16■□□□□ 0.02
CLN3-207ENST00000395653 M0R036 132 aa15.16■□□□□ 0.02
CLN3-207ENST00000395653 S100A4P26447 101 aaKnown RBP15.16■□□□□ 0.02
CLN3-207ENST00000395653 SLAQ13239 276 aa15.16■□□□□ 0.02
CLN3-207ENST00000395653 RNF212Q495C1 297 aa15.16■□□□□ 0.02
CLN3-207ENST00000395653 DNLZQ5SXM8 178 aa15.16■□□□□ 0.02
CLN3-207ENST00000395653 VSIG2Q96IQ7 327 aa15.16■□□□□ 0.02
CLN3-207ENST00000395653 FHL2Q14192 279 aa15.15■□□□□ 0.02
CLN3-207ENST00000395653 ZNF876PQ49A33 203 aa15.15■□□□□ 0.02
CLN3-207ENST00000395653 UBE2DNLQ8IWF7 75 aa15.15■□□□□ 0.02
CLN3-207ENST00000395653 ZNF479Q96JC4 524 aa15.15■□□□□ 0.02
CLN3-207ENST00000395653 MED9Q9NWA0 146 aa15.15■□□□□ 0.02
CLN3-207ENST00000395653 PRO0255Q9UI72 69 aa15.15■□□□□ 0.02
CLN3-207ENST00000395653 KMT2AQ03164 3969 aa15.15■□□□□ 0.02
CLN3-207ENST00000395653 CENPWQ5EE01 88 aa15.14■□□□□ 0.01
CLN3-207ENST00000395653 SMIM12Q96EX1 92 aa15.14■□□□□ 0.01
CLN3-207ENST00000395653 IL36BQ9NZH7 164 aa15.14■□□□□ 0.01
CLN3-207ENST00000395653 C9JCJ5 164 aa15.13■□□□□ 0.01
CLN3-207ENST00000395653 SFTA3P0C7M3 94 aa15.13■□□□□ 0.01
CLN3-207ENST00000395653 OR4C5Q8NGB2 326 aa15.13■□□□□ 0.01
CLN3-207ENST00000395653 HHLA3Q9XRX5 114 aa15.13■□□□□ 0.01
CLN3-207ENST00000395653 TRGV4A0A0C4DH28 118 aa15.12■□□□□ 0.01
CLN3-207ENST00000395653 RBFOX3A6NFN3 312 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms