RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 OR4C46A6NHA9 309 aa11.82□□□□□ -0.52
CCDC40-202ENST00000374876 HNRNPA3P51991 378 aaKnown RBP11.82□□□□□ -0.52
CCDC40-202ENST00000374876 BATFQ16520 125 aa11.82□□□□□ -0.52
CCDC40-202ENST00000374876 TMEM78Q5T7P6 136 aa11.82□□□□□ -0.52
CCDC40-202ENST00000374876 PRELID3AQ96N28 172 aa11.82□□□□□ -0.52
CCDC40-202ENST00000374876 U3KQK5 164 aa11.82□□□□□ -0.52
CCDC40-202ENST00000374876 IGHG2P01859 326 aa11.82□□□□□ -0.52
CCDC40-202ENST00000374876 AGPAT4-IT1Q9H0P7 198 aa11.82□□□□□ -0.52
CCDC40-202ENST00000374876 TCAPO15273 167 aa11.81□□□□□ -0.52
CCDC40-202ENST00000374876 RPLP1P05386 114 aaKnown RBP11.81□□□□□ -0.52
CCDC40-202ENST00000374876 IGLL1P15814 213 aa11.81□□□□□ -0.52
CCDC40-202ENST00000374876 MRPL51Q4U2R6 128 aaKnown RBP11.81□□□□□ -0.52
CCDC40-202ENST00000374876 Q8N2B8 174 aa11.81□□□□□ -0.52
CCDC40-202ENST00000374876 OR10AG1Q8NH19 301 aa11.81□□□□□ -0.52
CCDC40-202ENST00000374876 C16orf92Q96LL3 132 aa11.81□□□□□ -0.52
CCDC40-202ENST00000374876 LOC389332A0A1B0GUA5 103 aa11.81□□□□□ -0.52
CCDC40-202ENST00000374876 H3BUA1 57 aa11.81□□□□□ -0.52
CCDC40-202ENST00000374876 IFI27P40305 119 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-202ENST00000374876 LINC01559Q495D7 138 aa11.81□□□□□ -0.52
CCDC40-202ENST00000374876 PET117Q6UWS5 81 aa11.81□□□□□ -0.52
CCDC40-202ENST00000374876 ZNF575Q86XF7 245 aa11.81□□□□□ -0.52
CCDC40-202ENST00000374876 USMG5Q96IX5 58 aa11.81□□□□□ -0.52
CCDC40-202ENST00000374876 TMEM191AQ9H0A3 160 aa11.81□□□□□ -0.52
CCDC40-202ENST00000374876 H0Y8G0 127 aa11.8□□□□□ -0.52
CCDC40-202ENST00000374876 TRBV12-3P01733 135 aa11.8□□□□□ -0.52
CCDC40-202ENST00000374876 PPIFP30405 207 aaKnown RBP11.8□□□□□ -0.52
CCDC40-202ENST00000374876 CKS2P33552 79 aa11.8□□□□□ -0.52
CCDC40-202ENST00000374876 PROK1P58294 105 aa11.8□□□□□ -0.52
CCDC40-202ENST00000374876 KRTAP10-3P60369 221 aa11.8□□□□□ -0.52
CCDC40-202ENST00000374876 HIST2H2BDQ6DRA6 164 aa11.8□□□□□ -0.52
CCDC40-202ENST00000374876 C3orf56Q8N813 242 aa11.8□□□□□ -0.52
CCDC40-202ENST00000374876 SIGLEC8Q9NYZ4 499 aa11.8□□□□□ -0.52
CCDC40-202ENST00000374876 NDUFA4O00483 81 aa11.79□□□□□ -0.52
CCDC40-202ENST00000374876 BRI3O95415 125 aa11.79□□□□□ -0.52
CCDC40-202ENST00000374876 HIST1H1AQ02539 215 aaPredicted RBP11.79□□□□□ -0.52
CCDC40-202ENST00000374876 GLMPQ8WWB7 406 aa11.79□□□□□ -0.52
CCDC40-202ENST00000374876 CNFNQ9BYD5 112 aa11.79□□□□□ -0.52
CCDC40-202ENST00000374876 PF4V1P10720 104 aa11.79□□□□□ -0.52
CCDC40-202ENST00000374876 UNQ9165/PRO28630Q6UXU0 137 aa11.79□□□□□ -0.52
CCDC40-202ENST00000374876 C9orf47Q6ZRZ4 202 aa11.79□□□□□ -0.52
CCDC40-202ENST00000374876 IGHV3-11P01762 117 aa11.78□□□□□ -0.52
CCDC40-202ENST00000374876 TSPOP30536 169 aa11.78□□□□□ -0.52
CCDC40-202ENST00000374876 SPATA3Q8NHX4 192 aa11.78□□□□□ -0.52
CCDC40-202ENST00000374876 HSBP1L1C9JCN9 74 aa11.77□□□□□ -0.52
CCDC40-202ENST00000374876 FAM106AQ4KMX7 169 aa11.77□□□□□ -0.52
CCDC40-202ENST00000374876 C11orf44Q8N8P7 122 aa11.77□□□□□ -0.52
CCDC40-202ENST00000374876 ZNF747Q9BV97 191 aa11.77□□□□□ -0.52
CCDC40-202ENST00000374876 KLK15Q9H2R5 256 aa11.77□□□□□ -0.52
CCDC40-202ENST00000374876 ST20Q9HBF5 79 aa11.77□□□□□ -0.52
CCDC40-202ENST00000374876 MSRB1Q9NZV6 116 aa11.77□□□□□ -0.52
CCDC40-202ENST00000374876 LAMTOR2Q9Y2Q5 125 aa11.77□□□□□ -0.52
CCDC40-202ENST00000374876 SMKR1H3BMG3 65 aa11.77□□□□□ -0.53
CCDC40-202ENST00000374876 COL5A1-AS1Q5SY13 56 aa11.77□□□□□ -0.53
CCDC40-202ENST00000374876 ZNF738Q8NE65 137 aa11.77□□□□□ -0.53
CCDC40-202ENST00000374876 WFDC12Q8WWY7 111 aa11.77□□□□□ -0.53
CCDC40-202ENST00000374876 IGKV3D-20A0A0C4DH25 116 aa11.76□□□□□ -0.53
CCDC40-202ENST00000374876 NCR2O95944 276 aa11.76□□□□□ -0.53
CCDC40-202ENST00000374876 C10orf99Q6UWK7 81 aa11.76□□□□□ -0.53
CCDC40-202ENST00000374876 OR4X2Q8NGF9 303 aa11.76□□□□□ -0.53
CCDC40-202ENST00000374876 MRPS16Q9Y3D3 137 aaKnown RBP11.76□□□□□ -0.53
CCDC40-202ENST00000374876 A0A0G2JLM5 398 aa11.76□□□□□ -0.53
CCDC40-202ENST00000374876 hDV102S1A0JD36 115 aa11.76□□□□□ -0.53
CCDC40-202ENST00000374876 NPYP01303 97 aa11.76□□□□□ -0.53
CCDC40-202ENST00000374876 MCRIP2Q9BUT9 160 aaKnown RBP11.76□□□□□ -0.53
CCDC40-202ENST00000374876 PPP1R14DQ9NXH3 145 aa11.76□□□□□ -0.53
CCDC40-202ENST00000374876 C11orf21Q9P2W6 132 aa11.76□□□□□ -0.53
CCDC40-202ENST00000374876 PPBPP02775 128 aa11.75□□□□□ -0.53
CCDC40-202ENST00000374876 LINC01545Q5VT33 79 aa11.75□□□□□ -0.53
CCDC40-202ENST00000374876 IGLV1-40P01703 118 aa11.74□□□□□ -0.53
CCDC40-202ENST00000374876 RNF185Q96GF1 192 aa11.74□□□□□ -0.53
CCDC40-202ENST00000374876 C20orf173Q96LM9 149 aa11.74□□□□□ -0.53
CCDC40-202ENST00000374876 A0A096LNJ9 63 aa11.74□□□□□ -0.53
CCDC40-202ENST00000374876 G0S2P27469 103 aa11.74□□□□□ -0.53
CCDC40-202ENST00000374876 RPL11P62913 178 aaKnown RBP11.74□□□□□ -0.53
CCDC40-202ENST00000374876 FOXE3Q13461 319 aa11.74□□□□□ -0.53
CCDC40-202ENST00000374876 LCNL1Q6ZST4 164 aa11.74□□□□□ -0.53
CCDC40-202ENST00000374876 PMCHL2Q9BQD1 86 aa11.74□□□□□ -0.53
CCDC40-202ENST00000374876 ZNF25P17030 456 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-202ENST00000374876 GPHB5Q86YW7 130 aa11.73□□□□□ -0.53
CCDC40-202ENST00000374876 OR8A1Q8NGG7 326 aa11.73□□□□□ -0.53
CCDC40-202ENST00000374876 OR10J6PQ8NGY7 276 aa11.73□□□□□ -0.53
CCDC40-202ENST00000374876 MAP1LC3AQ9H492 121 aa11.73□□□□□ -0.53
CCDC40-202ENST00000374876 LENEPQ9Y5L5 61 aa11.73□□□□□ -0.53
CCDC40-202ENST00000374876 OVOL1O14753 267 aa11.72□□□□□ -0.53
CCDC40-202ENST00000374876 HBDP02042 147 aa11.72□□□□□ -0.53
CCDC40-202ENST00000374876 CD28P10747 220 aa11.72□□□□□ -0.53
CCDC40-202ENST00000374876 LINC00477Q96M19 166 aa11.72□□□□□ -0.53
CCDC40-202ENST00000374876 CITED1Q99966 193 aa11.72□□□□□ -0.53
CCDC40-202ENST00000374876 SMIM15Q7Z3B0 74 aa11.72□□□□□ -0.53
CCDC40-202ENST00000374876 DNHD1Q96M86 4753 aa11.71□□□□□ -0.53
CCDC40-202ENST00000374876 SOCS3O14543 225 aa11.71□□□□□ -0.53
CCDC40-202ENST00000374876 TFPI2P48307 235 aa11.71□□□□□ -0.53
CCDC40-202ENST00000374876 CFHR3Q02985 330 aa11.71□□□□□ -0.53
CCDC40-202ENST00000374876 SHISA2Q6UWI4 295 aa11.71□□□□□ -0.53
CCDC40-202ENST00000374876 STPG4Q8N801 248 aa11.71□□□□□ -0.53
CCDC40-202ENST00000374876 MS4A6AQ9H2W1 248 aa11.71□□□□□ -0.53
CCDC40-202ENST00000374876 IGHV7-4-1A0A0J9YVY3 117 aa11.7□□□□□ -0.54
CCDC40-202ENST00000374876 HINT1P49773 126 aaPredicted RBP11.7□□□□□ -0.54
CCDC40-202ENST00000374876 FXYD7P58549 80 aa11.7□□□□□ -0.54
CCDC40-202ENST00000374876 SLC25A34Q6PIV7 304 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms