RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 IGHV3-16A0A0C4DH30 117 aa12.5□□□□□ -0.41
COL17A1-202ENST00000369733 C2orf70A6NJV1 201 aa12.5□□□□□ -0.41
COL17A1-202ENST00000369733 I3L2K1 104 aa12.5□□□□□ -0.41
COL17A1-202ENST00000369733 FAM215AQ9Y5M1 114 aa12.5□□□□□ -0.41
COL17A1-202ENST00000369733 GAGE5Q13069 117 aa12.5□□□□□ -0.41
COL17A1-202ENST00000369733 GAGE6Q13070 117 aa12.5□□□□□ -0.41
COL17A1-202ENST00000369733 ZNF295-AS1Q8N0V1 137 aa12.5□□□□□ -0.41
COL17A1-202ENST00000369733 RITA1Q96K30 269 aa12.5□□□□□ -0.41
COL17A1-202ENST00000369733 HIGD1BQ9P298 99 aa12.5□□□□□ -0.41
COL17A1-202ENST00000369733 B4DSR2 109 aa12.5□□□□□ -0.41
COL17A1-202ENST00000369733 SPANXDQ9BXN6 97 aa12.5□□□□□ -0.41
COL17A1-202ENST00000369733 OBSL1O75147 1896 aa12.49□□□□□ -0.41
COL17A1-202ENST00000369733 IGKV1-17P01599 117 aa12.49□□□□□ -0.41
COL17A1-202ENST00000369733 CRIP3Q6Q6R5 217 aa12.49□□□□□ -0.41
COL17A1-202ENST00000369733 GNRH2O43555 120 aa12.48□□□□□ -0.41
COL17A1-202ENST00000369733 P0C879 139 aa12.48□□□□□ -0.41
COL17A1-202ENST00000369733 CMC4P56277 68 aaPredicted RBP12.48□□□□□ -0.41
COL17A1-202ENST00000369733 IGHV3-38A0A0C4DH36 116 aa12.48□□□□□ -0.41
COL17A1-202ENST00000369733 LY6DQ14210 128 aa12.48□□□□□ -0.41
COL17A1-202ENST00000369733 VWC2LB2RUY7 222 aa12.48□□□□□ -0.41
COL17A1-202ENST00000369733 DPH3Q96FX2 82 aa12.48□□□□□ -0.41
COL17A1-202ENST00000369733 ARHGAP21Q5T5U3 1957 aa12.47□□□□□ -0.41
COL17A1-202ENST00000369733 K7EIM0 57 aa12.47□□□□□ -0.41
COL17A1-202ENST00000369733 SPRY2O43597 315 aa12.47□□□□□ -0.41
COL17A1-202ENST00000369733 PRR30Q53SZ7 412 aaPredicted RBP12.47□□□□□ -0.41
COL17A1-202ENST00000369733 EML6Q6ZMW3 1958 aa12.47□□□□□ -0.41
COL17A1-202ENST00000369733 DSCR9P59020 149 aa12.47□□□□□ -0.41
COL17A1-202ENST00000369733 MRPL53Q96EL3 112 aaKnown RBP12.47□□□□□ -0.41
COL17A1-202ENST00000369733 RPL35AP18077 110 aaKnown RBP12.47□□□□□ -0.41
COL17A1-202ENST00000369733 IGFL3Q6UXB1 125 aa12.47□□□□□ -0.41
COL17A1-202ENST00000369733 ANKRD29Q8N6D5 301 aa12.47□□□□□ -0.41
COL17A1-202ENST00000369733 ZNF503Q96F45 646 aa12.47□□□□□ -0.41
COL17A1-202ENST00000369733 RNASE13Q5GAN3 156 aaKnown RBP12.46□□□□□ -0.41
COL17A1-202ENST00000369733 RPL39LQ96EH5 51 aaKnown RBP12.46□□□□□ -0.41
COL17A1-202ENST00000369733 IGHG4P01861 327 aa12.46□□□□□ -0.41
COL17A1-202ENST00000369733 PRSS33Q8NF86 280 aa12.46□□□□□ -0.42
COL17A1-202ENST00000369733 IGHV1-69DA0A0B4J2H0 117 aa12.45□□□□□ -0.42
COL17A1-202ENST00000369733 IGHV1-69P01742 117 aa12.45□□□□□ -0.42
COL17A1-202ENST00000369733 SS18Q15532 418 aa12.45□□□□□ -0.42
COL17A1-202ENST00000369733 F6UB75 175 aa12.45□□□□□ -0.42
COL17A1-202ENST00000369733 C19orf71A6NCJ1 209 aa12.45□□□□□ -0.42
COL17A1-202ENST00000369733 IGLV2-8P01709 118 aa12.45□□□□□ -0.42
COL17A1-202ENST00000369733 PFN2P35080 140 aa12.45□□□□□ -0.42
COL17A1-202ENST00000369733 MRPL36Q9P0J6 103 aaKnown RBP12.45□□□□□ -0.42
COL17A1-202ENST00000369733 SPATA12Q7Z6I5 190 aa12.44□□□□□ -0.42
COL17A1-202ENST00000369733 KLHL30-AS1Q8NEE0 82 aa12.44□□□□□ -0.42
COL17A1-202ENST00000369733 SRSF2Q01130 221 aaKnown RBP12.44□□□□□ -0.42
COL17A1-202ENST00000369733 XCL2Q9UBD3 114 aa12.44□□□□□ -0.42
COL17A1-202ENST00000369733 IGHV7-4-1A0A0J9YVY3 117 aa12.44□□□□□ -0.42
COL17A1-202ENST00000369733 A0A1B0GXF2 115 aa12.44□□□□□ -0.42
COL17A1-202ENST00000369733 RHOHQ15669 191 aa12.44□□□□□ -0.42
COL17A1-202ENST00000369733 LENEPQ9Y5L5 61 aa12.44□□□□□ -0.42
COL17A1-202ENST00000369733 NSUN5P1Q3KNT7 163 aa12.44□□□□□ -0.42
COL17A1-202ENST00000369733 ZNRF2Q8NHG8 242 aa12.44□□□□□ -0.42
COL17A1-202ENST00000369733 E7EUB6 86 aa12.44□□□□□ -0.42
COL17A1-202ENST00000369733 TRACP01848 142 aa12.44□□□□□ -0.42
COL17A1-202ENST00000369733 TEN1Q86WV5 123 aa12.44□□□□□ -0.42
COL17A1-202ENST00000369733 SPTBN2O15020 2390 aa12.43□□□□□ -0.42
COL17A1-202ENST00000369733 CADP27708 2225 aa12.43□□□□□ -0.42
COL17A1-202ENST00000369733 IGLV2-23P01705 113 aa12.43□□□□□ -0.42
COL17A1-202ENST00000369733 GDF5OSQ5U4N7 250 aa12.43□□□□□ -0.42
COL17A1-202ENST00000369733 INS-IGF2F8WCM5 200 aa12.43□□□□□ -0.42
COL17A1-202ENST00000369733 FOXI1Q12951 378 aa12.43□□□□□ -0.42
COL17A1-202ENST00000369733 KIAA1549LQ6ZVL6 1849 aa12.43□□□□□ -0.42
COL17A1-202ENST00000369733 IGFBPL1Q8WX77 278 aa12.43□□□□□ -0.42
COL17A1-202ENST00000369733 TP53TG3Q9ULZ0 132 aa12.42□□□□□ -0.42
COL17A1-202ENST00000369733 ABCA1O95477 2261 aa12.42□□□□□ -0.42
COL17A1-202ENST00000369733 ODF1Q14990 250 aa12.42□□□□□ -0.42
COL17A1-202ENST00000369733 BRWD1-AS2P59051 145 aa12.41□□□□□ -0.42
COL17A1-202ENST00000369733 HERVK_113P63121 156 aa12.41□□□□□ -0.42
COL17A1-202ENST00000369733 TRAV13-2A0A0B4J235 113 aa12.41□□□□□ -0.42
COL17A1-202ENST00000369733 TRAV12-1A0A0B4J245 112 aa12.41□□□□□ -0.42
COL17A1-202ENST00000369733 GPR179Q6PRD1 2367 aa12.41□□□□□ -0.42
COL17A1-202ENST00000369733 IGLV11-55A0A075B6I3 123 aa12.41□□□□□ -0.42
COL17A1-202ENST00000369733 CTRLP40313 264 aa12.41□□□□□ -0.42
COL17A1-202ENST00000369733 CRYBA4P53673 196 aa12.41□□□□□ -0.42
COL17A1-202ENST00000369733 A4D1N5 150 aa12.41□□□□□ -0.42
COL17A1-202ENST00000369733 TRBV6-1A0A0K0K1D8 114 aa12.4□□□□□ -0.42
COL17A1-202ENST00000369733 CR1LQ2VPA4 569 aa12.4□□□□□ -0.42
COL17A1-202ENST00000369733 WI2-2373I1.2A0A1W2PRP0 233 aa12.4□□□□□ -0.42
COL17A1-202ENST00000369733 MUSTN1Q8IVN3 82 aa12.4□□□□□ -0.42
COL17A1-202ENST00000369733 NPBQ8NG41 125 aa12.4□□□□□ -0.42
COL17A1-202ENST00000369733 UBL5Q9BZL1 73 aa12.4□□□□□ -0.42
COL17A1-202ENST00000369733 TP73-AS1Q9UF72 201 aa12.4□□□□□ -0.42
COL17A1-202ENST00000369733 SUMO4Q6EEV6 95 aa12.4□□□□□ -0.43
COL17A1-202ENST00000369733 CTSGP08311 255 aa12.39□□□□□ -0.43
COL17A1-202ENST00000369733 CFHR3Q02985 330 aa12.39□□□□□ -0.43
COL17A1-202ENST00000369733 LOXL1Q08397 574 aaPredicted RBP12.39□□□□□ -0.43
COL17A1-202ENST00000369733 ZFP2Q6ZN57 461 aa12.39□□□□□ -0.43
COL17A1-202ENST00000369733 TMEM243Q9BU79 118 aa12.39□□□□□ -0.43
COL17A1-202ENST00000369733 KIF26AQ9ULI4 1882 aaPredicted RBP12.39□□□□□ -0.43
COL17A1-202ENST00000369733 TNRC6AQ8NDV7 1962 aaKnown RBP12.39□□□□□ -0.43
COL17A1-202ENST00000369733 TEX22C9J3V5 150 aa12.39□□□□□ -0.43
COL17A1-202ENST00000369733 HOXB4P17483 251 aaPredicted RBP12.39□□□□□ -0.43
COL17A1-202ENST00000369733 USF3Q68DE3 2245 aa12.39□□□□□ -0.43
COL17A1-202ENST00000369733 MSMBP08118 114 aa12.39□□□□□ -0.43
COL17A1-202ENST00000369733 DEFB130BP0DP73 79 aa12.39□□□□□ -0.43
COL17A1-202ENST00000369733 DEFB130AP0DP74 79 aa12.39□□□□□ -0.43
COL17A1-202ENST00000369733 LINC00322Q6ZN03 302 aaPredicted RBP12.39□□□□□ -0.43
COL17A1-202ENST00000369733 GNLYP22749 145 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 144.3 ms