RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, human

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-206	ENST00000360019	RPS20	P60866	119 aa	Known RBP	13.68	□□□□□ -0.22
CLN3-206	ENST00000360019	PGLYRP4	Q96LB8	373 aa		13.68	□□□□□ -0.22
CLN3-206	ENST00000360019	NAGK	Q9UJ70	344 aa		13.68	□□□□□ -0.22
CLN3-206	ENST00000360019	GRIFIN	A4D1Z8	144 aa		13.67	□□□□□ -0.22
CLN3-206	ENST00000360019	TYMS	P04818	313 aa		13.67	□□□□□ -0.22
CLN3-206	ENST00000360019	MUC21	Q5SSG8	566 aa		13.67	□□□□□ -0.22
CLN3-206	ENST00000360019	LURAP1L	Q8IV03	231 aa		13.67	□□□□□ -0.22
CLN3-206	ENST00000360019	DNHD1	Q96M86	4753 aa		13.67	□□□□□ -0.22
CLN3-206	ENST00000360019	RBMY1A1	P0DJD3	496 aa	Known RBP	13.67	□□□□□ -0.22
CLN3-206	ENST00000360019	RBMY1C	P0DJD4	496 aa		13.67	□□□□□ -0.22
CLN3-206	ENST00000360019	RBMY1F	Q15415	496 aa	Known RBP	13.67	□□□□□ -0.22
CLN3-206	ENST00000360019	ANXA2R	Q3ZCQ2	193 aa		13.67	□□□□□ -0.22
CLN3-206	ENST00000360019	GTSCR1	Q86UQ5	136 aa		13.67	□□□□□ -0.22
CLN3-206	ENST00000360019	DEFB125	Q8N687	156 aa		13.67	□□□□□ -0.22
CLN3-206	ENST00000360019	IGLC6	P0CF74	106 aa		13.66	□□□□□ -0.22
CLN3-206	ENST00000360019	RPS10	P46783	165 aa	Known RBP	13.66	□□□□□ -0.22
CLN3-206	ENST00000360019	MRPL54	Q6P161	138 aa	Known RBP	13.66	□□□□□ -0.22
CLN3-206	ENST00000360019	OXLD1	Q5BKU9	147 aa		13.65	□□□□□ -0.22
CLN3-206	ENST00000360019	TPPP3	Q9BW30	176 aa		13.65	□□□□□ -0.22
CLN3-206	ENST00000360019	SRD5A3	Q9H8P0	318 aa		13.65	□□□□□ -0.22
CLN3-206	ENST00000360019	PRR31	Q5SQ13	230 aa		13.64	□□□□□ -0.23
CLN3-206	ENST00000360019	LYZL1	Q6UWQ5	148 aa		13.64	□□□□□ -0.23
CLN3-206	ENST00000360019	FER1L6-AS1	Q8NA97	138 aa		13.64	□□□□□ -0.23
CLN3-206	ENST00000360019		A0A1B0GXF2	115 aa		13.62	□□□□□ -0.23
CLN3-206	ENST00000360019	ARMS2	P0C7Q2	107 aa		13.62	□□□□□ -0.23
CLN3-206	ENST00000360019	CTRL	P40313	264 aa		13.62	□□□□□ -0.23
CLN3-206	ENST00000360019	FAM159A	Q6UWV7	190 aa		13.62	□□□□□ -0.23
CLN3-206	ENST00000360019		Q8N1Y9	231 aa		13.62	□□□□□ -0.23
CLN3-206	ENST00000360019	TMA7	Q9Y2S6	64 aa	Known RBP	13.62	□□□□□ -0.23
CLN3-206	ENST00000360019	GNRH2	O43555	120 aa		13.62	□□□□□ -0.23
CLN3-206	ENST00000360019	RPL35A	P18077	110 aa	Known RBP	13.62	□□□□□ -0.23
CLN3-206	ENST00000360019	TDRG1	Q3Y452	100 aa		13.62	□□□□□ -0.23
CLN3-206	ENST00000360019	ATP5L2	Q7Z4Y8	100 aa		13.62	□□□□□ -0.23
CLN3-206	ENST00000360019	XCL2	Q9UBD3	114 aa		13.62	□□□□□ -0.23
CLN3-206	ENST00000360019		A0A1B0GUT8	65 aa		13.61	□□□□□ -0.23
CLN3-206	ENST00000360019	GIG44	P09565	113 aa	Predicted RBP	13.61	□□□□□ -0.23
CLN3-206	ENST00000360019	IGHV1OR15-1	A0A075B7D0	117 aa		13.6	□□□□□ -0.23
CLN3-206	ENST00000360019	MUC21	A0A0G2JKD1	596 aa		13.6	□□□□□ -0.23
CLN3-206	ENST00000360019	MUC21	A0A140T8X8	626 aa		13.6	□□□□□ -0.23
CLN3-206	ENST00000360019	TRGC2	P03986	189 aa		13.6	□□□□□ -0.23
CLN3-206	ENST00000360019	NUTF2	P61970	127 aa	Known RBP	13.6	□□□□□ -0.23
CLN3-206	ENST00000360019	KCNS1	Q96KK3	526 aa		13.6	□□□□□ -0.23
CLN3-206	ENST00000360019	TP53TG3	Q9ULZ0	132 aa		13.6	□□□□□ -0.23
CLN3-206	ENST00000360019		H3BVH4	76 aa		13.6	□□□□□ -0.23
CLN3-206	ENST00000360019	INS	P01308	110 aa		13.6	□□□□□ -0.23
CLN3-206	ENST00000360019	AMBP	P02760	352 aa		13.6	□□□□□ -0.23
CLN3-206	ENST00000360019	CAMP	P49913	170 aa		13.6	□□□□□ -0.23
CLN3-206	ENST00000360019	TMEM136	Q6ZRR5	245 aa		13.6	□□□□□ -0.23
CLN3-206	ENST00000360019	SSBP4	Q9BWG4	385 aa	Predicted RBP	13.6	□□□□□ -0.23
CLN3-206	ENST00000360019	SNURFL	B1AK76	121 aa		13.59	□□□□□ -0.23
CLN3-206	ENST00000360019	PHOX2A	O14813	284 aa		13.59	□□□□□ -0.23
CLN3-206	ENST00000360019	ASIP	P42127	132 aa		13.59	□□□□□ -0.23
CLN3-206	ENST00000360019	HBB	P68871	147 aa		13.59	□□□□□ -0.23
CLN3-206	ENST00000360019	DNLZ	Q5SXM8	178 aa		13.59	□□□□□ -0.23
CLN3-206	ENST00000360019	RASL11A	Q6T310	242 aa		13.59	□□□□□ -0.23
CLN3-206	ENST00000360019	CNFN	Q9BYD5	112 aa		13.59	□□□□□ -0.23
CLN3-206	ENST00000360019	SNAI2	O43623	268 aa		13.58	□□□□□ -0.24
CLN3-206	ENST00000360019	RNASE3	P12724	160 aa	Known RBP	13.58	□□□□□ -0.24
CLN3-206	ENST00000360019	KRTAP10-11	P60412	298 aa		13.58	□□□□□ -0.24
CLN3-206	ENST00000360019	SST	P61278	116 aa		13.58	□□□□□ -0.24
CLN3-206	ENST00000360019	EGFEM1P	Q0D2K5	195 aa		13.58	□□□□□ -0.24
CLN3-206	ENST00000360019	GNB1L	Q9BYB4	327 aa		13.58	□□□□□ -0.24
CLN3-206	ENST00000360019		F2Z2F3	143 aa		13.57	□□□□□ -0.24
CLN3-206	ENST00000360019	OR5AL1	P0C617	328 aa		13.57	□□□□□ -0.24
CLN3-206	ENST00000360019	OR10AG1	Q8NH19	301 aa		13.57	□□□□□ -0.24
CLN3-206	ENST00000360019	C20orf144	Q9BQM9	153 aa		13.57	□□□□□ -0.24
CLN3-206	ENST00000360019	S100A4	P26447	101 aa	Known RBP	13.57	□□□□□ -0.24
CLN3-206	ENST00000360019	RAB4B	P61018	213 aa		13.57	□□□□□ -0.24
CLN3-206	ENST00000360019	C1orf158	Q8N1D5	194 aa		13.57	□□□□□ -0.24
CLN3-206	ENST00000360019	BORCS7	Q96B45	105 aa		13.57	□□□□□ -0.24
CLN3-206	ENST00000360019	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	13.57	□□□□□ -0.24
CLN3-206	ENST00000360019	TRAPPC1	Q9Y5R8	145 aa		13.57	□□□□□ -0.24
CLN3-206	ENST00000360019	SPRY2	O43597	315 aa		13.56	□□□□□ -0.24
CLN3-206	ENST00000360019	FABP9	Q0Z7S8	132 aa		13.56	□□□□□ -0.24
CLN3-206	ENST00000360019	RIG	Q13278	110 aa		13.56	□□□□□ -0.24
CLN3-206	ENST00000360019	WDR73	Q6P4I2	378 aa		13.56	□□□□□ -0.24
CLN3-206	ENST00000360019	MORN3	Q6PF18	240 aa	Predicted RBP	13.56	□□□□□ -0.24
CLN3-206	ENST00000360019	SCRT2	Q9NQ03	307 aa		13.56	□□□□□ -0.24
CLN3-206	ENST00000360019	IGHV3-16	A0A0C4DH30	117 aa		13.55	□□□□□ -0.24
CLN3-206	ENST00000360019	C1orf196	B1AJZ1	125 aa		13.55	□□□□□ -0.24
CLN3-206	ENST00000360019		G3V4G9	280 aa		13.55	□□□□□ -0.24
CLN3-206	ENST00000360019	PRM2	P04554	102 aa		13.55	□□□□□ -0.24
CLN3-206	ENST00000360019	MED14OS	P0DP75	135 aa		13.55	□□□□□ -0.24
CLN3-206	ENST00000360019	NTF3	P20783	257 aa		13.55	□□□□□ -0.24
CLN3-206	ENST00000360019	COX19	Q49B96	90 aa		13.55	□□□□□ -0.24
CLN3-206	ENST00000360019	ZFP82	Q8N141	532 aa		13.55	□□□□□ -0.24
CLN3-206	ENST00000360019	FRZB	Q92765	325 aa		13.55	□□□□□ -0.24
CLN3-206	ENST00000360019	MRPL18	Q9H0U6	180 aa	Known RBP	13.55	□□□□□ -0.24
CLN3-206	ENST00000360019	MSRB1	Q9NZV6	116 aa		13.55	□□□□□ -0.24
CLN3-206	ENST00000360019	MDFIC	Q9P1T7	246 aa		13.55	□□□□□ -0.24
CLN3-206	ENST00000360019	MT-ND6	P03923	174 aa		13.55	□□□□□ -0.24
CLN3-206	ENST00000360019	LINC01587	Q99440	93 aa		13.55	□□□□□ -0.24
CLN3-206	ENST00000360019	NOTCH1	P46531	2555 aa		13.55	□□□□□ -0.24
CLN3-206	ENST00000360019	CBY3	A6NI87	242 aa		13.54	□□□□□ -0.24
CLN3-206	ENST00000360019	HTN1	P15515	57 aa		13.54	□□□□□ -0.24
CLN3-206	ENST00000360019	TWIST1	Q15672	202 aa		13.54	□□□□□ -0.24
CLN3-206	ENST00000360019	CSNK1G2-AS1	Q8NCQ2	148 aa		13.54	□□□□□ -0.24
CLN3-206	ENST00000360019	LINC00467	Q9BRT7	94 aa		13.54	□□□□□ -0.24
CLN3-206	ENST00000360019	NBEAL1	Q6ZS30	2694 aa		13.54	□□□□□ -0.24
CLN3-206	ENST00000360019		A0A1B0GW15	77 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms