RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 C21orf62Q9NYP8 219 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 NBR2O15453 112 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 SPRY2O43597 315 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 SRSF9Q13242 221 aaKnown RBP eCLIP5.2□□□□□ -1.58
VPS39-202ENST00000348544 RNF5Q99942 180 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 ONECUT1Q9UBC0 465 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 RALYQ9UKM9 306 aaKnown RBP5.2□□□□□ -1.58
VPS39-202ENST00000348544 IGHV4-4A0A075B6R2 117 aa5.19□□□□□ -1.58
VPS39-202ENST00000348544 A0A0J9YY99 117 aa5.19□□□□□ -1.58
VPS39-202ENST00000348544 A8MWV9 139 aa5.19□□□□□ -1.58
VPS39-202ENST00000348544 H3BVH4 76 aa5.19□□□□□ -1.58
VPS39-202ENST00000348544 CDX4O14627 284 aaPredicted RBP5.19□□□□□ -1.58
VPS39-202ENST00000348544 CFC1BP0CG36 223 aa5.19□□□□□ -1.58
VPS39-202ENST00000348544 CFC1P0CG37 223 aa5.19□□□□□ -1.58
VPS39-202ENST00000348544 Q6ZS46 218 aa5.19□□□□□ -1.58
VPS39-202ENST00000348544 RPL39LQ96EH5 51 aaKnown RBP5.19□□□□□ -1.58
VPS39-202ENST00000348544 TPRP12270 2363 aaKnown RBP5.19□□□□□ -1.58
VPS39-202ENST00000348544 ADGRG4Q8IZF6 3080 aa5.19□□□□□ -1.58
VPS39-202ENST00000348544 CRYGDP07320 174 aa5.19□□□□□ -1.58
VPS39-202ENST00000348544 SRD5A1P18405 259 aa5.19□□□□□ -1.58
VPS39-202ENST00000348544 CRIP2P52943 208 aaPredicted RBP5.19□□□□□ -1.58
VPS39-202ENST00000348544 ANXA2RQ3ZCQ2 193 aa5.19□□□□□ -1.58
VPS39-202ENST00000348544 SPANXN1Q5VSR9 72 aa5.19□□□□□ -1.58
VPS39-202ENST00000348544 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.19□□□□□ -1.58
VPS39-202ENST00000348544 TEX29Q8N6K0 151 aa5.19□□□□□ -1.58
VPS39-202ENST00000348544 RNASE6Q93091 150 aaKnown RBP5.19□□□□□ -1.58
VPS39-202ENST00000348544 TRIOBPQ9H2D6 2365 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 RBAKDNA6NC62 111 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 LYNX1G3V0Z9 82 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 EIF4EBP3O60516 100 aaPredicted RBP5.18□□□□□ -1.58
VPS39-202ENST00000348544 CRLF1O75462 422 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 LYNX1P0DP58 116 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 TSPEAR-AS2P59090 65 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 SUMO2P61956 95 aaKnown RBP5.18□□□□□ -1.58
VPS39-202ENST00000348544 ORMDL2Q53FV1 153 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 PRR9Q5T870 116 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 C2orf66Q6UXQ4 117 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 CEP250Q9BV73 2442 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 IGLV4-69A0A075B6H9 119 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 TRBV20-1A0A075B6N2 111 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 TRAV8-2A0A0B4J237 113 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 TRAV4A0A0B4J268 109 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 IGHV3-66A0A0C4DH42 116 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 C11orf86A6NJI1 115 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 RHODO00212 210 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 IGHV3-30P01768 117 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 IGHV3-30-5P0DP03 117 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 EMP1P54849 157 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 C4orf48Q5BLP8 95 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 NPBQ8NG41 125 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 SLC50A1Q9BRV3 221 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 VCX2Q9H322 139 aa5.18□□□□□ -1.58
VPS39-202ENST00000348544 LAMA5O15230 3695 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 CCDC179H3BU77 68 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 TSHBP01222 138 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 PRTN3P24158 256 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 LYRM7Q5U5X0 104 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 SHISA2Q6UWI4 295 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 C10orf126Q8N4M7 172 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 IGHV3OR16-13A0A075B7E8 117 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 IGHV3-74A0A0B4J1X5 117 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 TMEM262E9PQX1 116 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 BUB3O43684 328 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 SLC25A20O43772 301 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 DUSP14O95147 198 aaKnown RBP5.17□□□□□ -1.58
VPS39-202ENST00000348544 IGF1P05019 195 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 NDUFV3P56181 108 aaKnown RBP5.17□□□□□ -1.58
VPS39-202ENST00000348544 DEFB109BQ30KR1 87 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 TRPT1Q86TN4 253 aaKnown RBP5.17□□□□□ -1.58
VPS39-202ENST00000348544 ZFAND3Q9H8U3 227 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 POLEQ07864 2286 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 WNK2Q9Y3S1 2297 aa5.17□□□□□ -1.58
VPS39-202ENST00000348544 CUL9Q8IWT3 2517 aa5.16□□□□□ -1.58
VPS39-202ENST00000348544 CLPSL1A2RUU4 121 aa5.16□□□□□ -1.58
VPS39-202ENST00000348544 AMELXQ99217 191 aa5.16□□□□□ -1.58
VPS39-202ENST00000348544 DYNLRB1Q9NP97 96 aa5.16□□□□□ -1.58
VPS39-202ENST00000348544 ARHGAP32A7KAX9 2087 aa5.16□□□□□ -1.58
VPS39-202ENST00000348544 TRBV7-9A0A0J9YWB2 115 aa5.16□□□□□ -1.58
VPS39-202ENST00000348544 C9JAW5 83 aa5.16□□□□□ -1.58
VPS39-202ENST00000348544 ELANEP08246 267 aa5.16□□□□□ -1.58
VPS39-202ENST00000348544 HES1Q14469 280 aa5.16□□□□□ -1.58
VPS39-202ENST00000348544 PIP4P1Q86T03 277 aa5.16□□□□□ -1.58
VPS39-202ENST00000348544 PRO1854Q9UHT4 67 aa5.16□□□□□ -1.58
VPS39-202ENST00000348544 IGHV3-49A0A0A0MS15 119 aa5.15□□□□□ -1.58
VPS39-202ENST00000348544 E7EQL1 145 aa5.15□□□□□ -1.58
VPS39-202ENST00000348544 M0R381 172 aa5.15□□□□□ -1.58
VPS39-202ENST00000348544 SCGB1C2P0DMR2 95 aa5.15□□□□□ -1.58
VPS39-202ENST00000348544 C14orf178Q8N769 122 aaPredicted RBP5.15□□□□□ -1.58
VPS39-202ENST00000348544 SLC25A29Q8N8R3 303 aa5.15□□□□□ -1.58
VPS39-202ENST00000348544 DEFB104AQ8WTQ1 72 aa5.15□□□□□ -1.58
VPS39-202ENST00000348544 DMXL1Q9Y485 3027 aa5.15□□□□□ -1.58
VPS39-202ENST00000348544 PCNX1Q96RV3 2341 aa5.15□□□□□ -1.59
VPS39-202ENST00000348544 A0A0G2JNJ9 132 aa5.15□□□□□ -1.59
VPS39-202ENST00000348544 CENPVL3A0A0U1RRI6 287 aa5.15□□□□□ -1.59
VPS39-202ENST00000348544 GAGE2BQ13066 116 aa5.15□□□□□ -1.59
VPS39-202ENST00000348544 GAGE2EQ4V326 116 aa5.15□□□□□ -1.59
VPS39-202ENST00000348544 C9orf47Q6ZRZ4 202 aa5.15□□□□□ -1.59
VPS39-202ENST00000348544 RAX2Q96IS3 184 aa5.15□□□□□ -1.59
VPS39-202ENST00000348544 DPM3Q9P2X0 92 aa5.15□□□□□ -1.59
VPS39-202ENST00000348544 GAGE2DQ9UEU5 116 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms