RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 CARD19Q96LW7 228 aa13.02□□□□□ -0.32
SH3RF1-201ENST00000284637 CFHR3Q02985 330 aa13.02□□□□□ -0.33
SH3RF1-201ENST00000284637 NDUFA12Q9UI09 145 aa13.02□□□□□ -0.33
SH3RF1-201ENST00000284637 NLRC5Q86WI3 1866 aa13.02□□□□□ -0.33
SH3RF1-201ENST00000284637 ZGRF1Q86YA3 2104 aa13.02□□□□□ -0.33
SH3RF1-201ENST00000284637 FGF23Q9GZV9 251 aaPredicted RBP13.02□□□□□ -0.33
SH3RF1-201ENST00000284637 IGHV1OR15-1A0A075B7D0 117 aa13.01□□□□□ -0.33
SH3RF1-201ENST00000284637 HERV-K104P63124 156 aa13.01□□□□□ -0.33
SH3RF1-201ENST00000284637 J3KT08 172 aa13□□□□□ -0.33
SH3RF1-201ENST00000284637 CFC1BP0CG36 223 aa13□□□□□ -0.33
SH3RF1-201ENST00000284637 CFC1P0CG37 223 aa13□□□□□ -0.33
SH3RF1-201ENST00000284637 SS18Q15532 418 aa13□□□□□ -0.33
SH3RF1-201ENST00000284637 PCNX2A6NKB5 2137 aa13□□□□□ -0.33
SH3RF1-201ENST00000284637 DTX1Q86Y01 620 aa13□□□□□ -0.33
SH3RF1-201ENST00000284637 ATP6V0E2Q8NHE4 81 aa13□□□□□ -0.33
SH3RF1-201ENST00000284637 C2orf70A6NJV1 201 aa12.99□□□□□ -0.33
SH3RF1-201ENST00000284637 RHODO00212 210 aa12.99□□□□□ -0.33
SH3RF1-201ENST00000284637 EGR2P11161 476 aaPredicted RBP12.99□□□□□ -0.33
SH3RF1-201ENST00000284637 SPATA12Q7Z6I5 190 aa12.99□□□□□ -0.33
SH3RF1-201ENST00000284637 SSC4DQ8WTU2 575 aa12.99□□□□□ -0.33
SH3RF1-201ENST00000284637 SOCS3O14543 225 aa12.99□□□□□ -0.33
SH3RF1-201ENST00000284637 C11orf53Q8IXP5 236 aa12.99□□□□□ -0.33
SH3RF1-201ENST00000284637 J3QQQ9 107 aa12.99□□□□□ -0.33
SH3RF1-201ENST00000284637 NOTCH4Q99466 2003 aa12.99□□□□□ -0.33
SH3RF1-201ENST00000284637 MAPK1IP1LQ8NDC0 245 aa12.99□□□□□ -0.33
SH3RF1-201ENST00000284637 RNF183Q96D59 192 aa12.98□□□□□ -0.33
SH3RF1-201ENST00000284637 EML6Q6ZMW3 1958 aa12.98□□□□□ -0.33
SH3RF1-201ENST00000284637 SPRY2O43597 315 aa12.98□□□□□ -0.33
SH3RF1-201ENST00000284637 ACYP1P07311 99 aa12.98□□□□□ -0.33
SH3RF1-201ENST00000284637 GATA1P15976 413 aaPredicted RBP12.98□□□□□ -0.33
SH3RF1-201ENST00000284637 RNASE13Q5GAN3 156 aaKnown RBP12.98□□□□□ -0.33
SH3RF1-201ENST00000284637 ZNRF2Q8NHG8 242 aa12.98□□□□□ -0.33
SH3RF1-201ENST00000284637 WNK1Q9H4A3 2382 aa12.98□□□□□ -0.33
SH3RF1-201ENST00000284637 CTRLP40313 264 aa12.98□□□□□ -0.33
SH3RF1-201ENST00000284637 DYNAPQ8N1N2 210 aa12.98□□□□□ -0.33
SH3RF1-201ENST00000284637 FRMD6-AS1P0C7T7 363 aa12.97□□□□□ -0.33
SH3RF1-201ENST00000284637 IGHV1-69DA0A0B4J2H0 117 aa12.97□□□□□ -0.33
SH3RF1-201ENST00000284637 IGHV1-69P01742 117 aa12.97□□□□□ -0.33
SH3RF1-201ENST00000284637 SPG11Q96JI7 2443 aa12.97□□□□□ -0.33
SH3RF1-201ENST00000284637 FAM208BQ5VWN6 2430 aa12.97□□□□□ -0.33
SH3RF1-201ENST00000284637 PLXNA2O75051 1894 aa12.97□□□□□ -0.33
SH3RF1-201ENST00000284637 PTPRQQ9UMZ3 2332 aa12.97□□□□□ -0.33
SH3RF1-201ENST00000284637 C11orf1Q9H5F2 150 aa12.97□□□□□ -0.33
SH3RF1-201ENST00000284637 MSMBP08118 114 aa12.97□□□□□ -0.33
SH3RF1-201ENST00000284637 NDUFA4O00483 81 aa12.96□□□□□ -0.33
SH3RF1-201ENST00000284637 FAM215AQ9Y5M1 114 aa12.96□□□□□ -0.33
SH3RF1-201ENST00000284637 C1orf43Q9BWL3 253 aa12.96□□□□□ -0.33
SH3RF1-201ENST00000284637 F6UB75 175 aa12.96□□□□□ -0.34
SH3RF1-201ENST00000284637 NXPH4O95158 308 aa12.96□□□□□ -0.34
SH3RF1-201ENST00000284637 AGPAT4-IT1Q9H0P7 198 aa12.96□□□□□ -0.34
SH3RF1-201ENST00000284637 FOXE3Q13461 319 aa12.95□□□□□ -0.34
SH3RF1-201ENST00000284637 LINC01356Q8N9X3 169 aa12.95□□□□□ -0.34
SH3RF1-201ENST00000284637 IGFBPL1Q8WX77 278 aa12.95□□□□□ -0.34
SH3RF1-201ENST00000284637 IGF2BP2-AS1Q96M15 143 aa12.95□□□□□ -0.34
SH3RF1-201ENST00000284637 CFHR4Q92496 578 aa12.95□□□□□ -0.34
SH3RF1-201ENST00000284637 C20orf78Q9BR46 151 aa12.94□□□□□ -0.34
SH3RF1-201ENST00000284637 TTC28Q96AY4 2481 aa12.94□□□□□ -0.34
SH3RF1-201ENST00000284637 GNRH2O43555 120 aa12.94□□□□□ -0.34
SH3RF1-201ENST00000284637 SPRNQ5BIV9 151 aa12.94□□□□□ -0.34
SH3RF1-201ENST00000284637 ANAPC1Q9H1A4 1944 aa12.94□□□□□ -0.34
SH3RF1-201ENST00000284637 Q6ZUT4 128 aa12.93□□□□□ -0.34
SH3RF1-201ENST00000284637 CTSZQ9UBR2 303 aa12.93□□□□□ -0.34
SH3RF1-201ENST00000284637 TICRRQ7Z2Z1 1910 aa12.93□□□□□ -0.34
SH3RF1-201ENST00000284637 ZFHX2Q9C0A1 2572 aaPredicted RBP12.93□□□□□ -0.34
SH3RF1-201ENST00000284637 RNF223E7ERA6 249 aa12.93□□□□□ -0.34
SH3RF1-201ENST00000284637 ARHGAP21Q5T5U3 1957 aa12.93□□□□□ -0.34
SH3RF1-201ENST00000284637 C22orf46C9J442 243 aa12.92□□□□□ -0.34
SH3RF1-201ENST00000284637 FAM236AA0A1B0GUQ0 79 aa12.92□□□□□ -0.34
SH3RF1-201ENST00000284637 FAM236BA0A1B0GV22 79 aa12.92□□□□□ -0.34
SH3RF1-201ENST00000284637 UBL5Q9BZL1 73 aa12.92□□□□□ -0.34
SH3RF1-201ENST00000284637 MSRB1Q9NZV6 116 aa12.92□□□□□ -0.34
SH3RF1-201ENST00000284637 TTTY13Q9BZ97 58 aa12.91□□□□□ -0.34
SH3RF1-201ENST00000284637 PATE2Q6UY27 113 aa12.91□□□□□ -0.34
SH3RF1-201ENST00000284637 K7EMI3 77 aa12.91□□□□□ -0.34
SH3RF1-201ENST00000284637 IGFL3Q6UXB1 125 aa12.91□□□□□ -0.34
SH3RF1-201ENST00000284637 KAAG1Q9UBP8 84 aa12.91□□□□□ -0.34
SH3RF1-201ENST00000284637 HAMPP81172 84 aa12.91□□□□□ -0.34
SH3RF1-201ENST00000284637 TMEM243Q9BU79 118 aa12.9□□□□□ -0.34
SH3RF1-201ENST00000284637 CR1LQ2VPA4 569 aa12.9□□□□□ -0.34
SH3RF1-201ENST00000284637 LINC01619G3V211 115 aa12.9□□□□□ -0.34
SH3RF1-201ENST00000284637 ATOX1O00244 68 aa12.9□□□□□ -0.34
SH3RF1-201ENST00000284637 ZNF493Q6ZR52 646 aa12.9□□□□□ -0.34
SH3RF1-201ENST00000284637 TNCP24821 2201 aa12.9□□□□□ -0.34
SH3RF1-201ENST00000284637 F8WEM9 126 aa12.9□□□□□ -0.35
SH3RF1-201ENST00000284637 RS1O15537 224 aa12.9□□□□□ -0.35
SH3RF1-201ENST00000284637 GP9P14770 177 aa12.9□□□□□ -0.35
SH3RF1-201ENST00000284637 IGHV7-4-1A0A0J9YVY3 117 aa12.89□□□□□ -0.35
SH3RF1-201ENST00000284637 TNRC6AQ8NDV7 1962 aaKnown RBP12.89□□□□□ -0.35
SH3RF1-201ENST00000284637 LINC01620Q4KN68 170 aa12.89□□□□□ -0.35
SH3RF1-201ENST00000284637 CLUHP3Q96NS8 147 aa12.89□□□□□ -0.35
SH3RF1-201ENST00000284637 SPANXB1Q9NS25 103 aaPredicted RBP12.89□□□□□ -0.35
SH3RF1-201ENST00000284637 RBMY1FQ15415 496 aaKnown RBP12.88□□□□□ -0.35
SH3RF1-201ENST00000284637 Q6ZSR3 168 aa12.88□□□□□ -0.35
SH3RF1-201ENST00000284637 TINCRA0A1B0GVN0 87 aa12.88□□□□□ -0.35
SH3RF1-201ENST00000284637 MT-ATP8P03928 68 aa12.88□□□□□ -0.35
SH3RF1-201ENST00000284637 GTSF1Q8WW33 167 aa12.88□□□□□ -0.35
SH3RF1-201ENST00000284637 RITA1Q96K30 269 aa12.88□□□□□ -0.35
SH3RF1-201ENST00000284637 MRAPQ8TCY5 172 aa12.88□□□□□ -0.35
SH3RF1-201ENST00000284637 FREM1Q5H8C1 2179 aa12.88□□□□□ -0.35
SH3RF1-201ENST00000284637 TRAV12-1A0A0B4J245 112 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms