RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 AVPP01185 164 aa7.98□□□□□ -1.13
UPF3B-201ENST00000276201 TWIST1Q15672 202 aa7.98□□□□□ -1.13
UPF3B-201ENST00000276201 KLF17Q5JT82 389 aaPredicted RBP7.98□□□□□ -1.13
UPF3B-201ENST00000276201 ZNF575Q86XF7 245 aa7.98□□□□□ -1.13
UPF3B-201ENST00000276201 PRIMA1Q86XR5 153 aa7.98□□□□□ -1.13
UPF3B-201ENST00000276201 ARPC1AQ92747 370 aa7.98□□□□□ -1.13
UPF3B-201ENST00000276201 IGLV2-18A0A075B6J9 118 aa7.97□□□□□ -1.13
UPF3B-201ENST00000276201 TRBV25-1A0A075B6N4 114 aa7.97□□□□□ -1.13
UPF3B-201ENST00000276201 PPIAL4CA0A0B4J2A2 164 aa7.97□□□□□ -1.13
UPF3B-201ENST00000276201 IGLL5B9A064 214 aa7.97□□□□□ -1.13
UPF3B-201ENST00000276201 EGR2P11161 476 aaPredicted RBP7.97□□□□□ -1.13
UPF3B-201ENST00000276201 RPL7P18124 248 aaKnown RBP7.97□□□□□ -1.13
UPF3B-201ENST00000276201 FCGR2BP31994 310 aaPredicted RBP7.97□□□□□ -1.13
UPF3B-201ENST00000276201 SVEP1Q4LDE5 3571 aa7.97□□□□□ -1.13
UPF3B-201ENST00000276201 NPIPB5A8MRT5 1133 aa7.97□□□□□ -1.13
UPF3B-201ENST00000276201 J3QLI3 93 aa7.97□□□□□ -1.13
UPF3B-201ENST00000276201 SRD5A1P18405 259 aa7.97□□□□□ -1.13
UPF3B-201ENST00000276201 GCSHP23434 173 aa7.97□□□□□ -1.13
UPF3B-201ENST00000276201 GATA3P23771 443 aa7.97□□□□□ -1.13
UPF3B-201ENST00000276201 LCNL1Q6ZST4 164 aa7.97□□□□□ -1.13
UPF3B-201ENST00000276201 NPBQ8NG41 125 aa7.97□□□□□ -1.13
UPF3B-201ENST00000276201 TPPP3Q9BW30 176 aa7.97□□□□□ -1.13
UPF3B-201ENST00000276201 MXRA5Q9NR99 2828 aa7.97□□□□□ -1.13
UPF3B-201ENST00000276201 IGKV2D-26A0A0A0MRZ7 120 aa7.96□□□□□ -1.13
UPF3B-201ENST00000276201 RBAKDNA6NC62 111 aa7.96□□□□□ -1.13
UPF3B-201ENST00000276201 M0R3E3 92 aa7.96□□□□□ -1.13
UPF3B-201ENST00000276201 NDUFA3O95167 84 aa7.96□□□□□ -1.13
UPF3B-201ENST00000276201 IL4P05112 153 aa7.96□□□□□ -1.13
UPF3B-201ENST00000276201 LEPP41159 167 aa7.96□□□□□ -1.13
UPF3B-201ENST00000276201 NAA38Q9BRA0 125 aaKnown RBP7.96□□□□□ -1.13
UPF3B-201ENST00000276201 IGHV3-72A0A0B4J1Y9 119 aa7.96□□□□□ -1.14
UPF3B-201ENST00000276201 TNFRSF6BO95407 300 aa7.96□□□□□ -1.14
UPF3B-201ENST00000276201 AZU1P20160 251 aa7.96□□□□□ -1.14
UPF3B-201ENST00000276201 MFAP4P55083 255 aa7.96□□□□□ -1.14
UPF3B-201ENST00000276201 FBXL15Q9H469 300 aa7.96□□□□□ -1.14
UPF3B-201ENST00000276201 TRAV12-1A0A0B4J245 112 aa7.95□□□□□ -1.14
UPF3B-201ENST00000276201 A0A1B0GV72 72 aa7.95□□□□□ -1.14
UPF3B-201ENST00000276201 GAGE12HA6NDE8 117 aa7.95□□□□□ -1.14
UPF3B-201ENST00000276201 RPL24P83731 157 aaKnown RBP7.95□□□□□ -1.14
UPF3B-201ENST00000276201 TCTEX1D4Q5JR98 221 aa7.95□□□□□ -1.14
UPF3B-201ENST00000276201 ATP6V0E2Q8NHE4 81 aa7.95□□□□□ -1.14
UPF3B-201ENST00000276201 IGLV11-55A0A075B6I3 123 aa7.95□□□□□ -1.14
UPF3B-201ENST00000276201 FABP5P3A8MUU1 101 aa7.95□□□□□ -1.14
UPF3B-201ENST00000276201 SCGB2A1O75556 95 aa7.95□□□□□ -1.14
UPF3B-201ENST00000276201 C18orf15Q96N68 181 aa7.95□□□□□ -1.14
UPF3B-201ENST00000276201 SMKR1H3BMG3 65 aa7.94□□□□□ -1.14
UPF3B-201ENST00000276201 FSHBP01225 129 aa7.94□□□□□ -1.14
UPF3B-201ENST00000276201 KLK9Q2XQG4 91 aa7.94□□□□□ -1.14
UPF3B-201ENST00000276201 C12orf74Q32Q52 190 aa7.94□□□□□ -1.14
UPF3B-201ENST00000276201 SVIPQ8NHG7 77 aa7.94□□□□□ -1.14
UPF3B-201ENST00000276201 PRO0461Q9UI25 63 aa7.94□□□□□ -1.14
UPF3B-201ENST00000276201 KLK9Q9UKQ9 250 aa7.94□□□□□ -1.14
UPF3B-201ENST00000276201 IGHV4-4A0A075B6R2 117 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 A0A087WX48 190 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 PRSS1P07477 247 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 PLNP26678 52 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 RRN3P1Q2M238 152 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 RPEQ96AT9 228 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 ZNF479Q96JC4 524 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 ASCL2Q99929 193 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 ATRQ13535 2644 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 TRBV7-3A0A075B6L6 115 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 F8W735 103 aaPredicted RBP7.93□□□□□ -1.14
UPF3B-201ENST00000276201 IGHG4P01861 327 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 RAB9AP51151 201 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 ZNF80P51504 273 aaPredicted RBP7.93□□□□□ -1.14
UPF3B-201ENST00000276201 KRTAP21-3Q3LHN1 58 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 TTC9CQ8N5M4 171 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 ATP6V0BQ99437 205 aa7.93□□□□□ -1.14
UPF3B-201ENST00000276201 IGKV2-40A0A087WW87 121 aaPredicted RBP7.92□□□□□ -1.14
UPF3B-201ENST00000276201 TMSB15BA0A087X1C1 80 aa7.92□□□□□ -1.14
UPF3B-201ENST00000276201 K7EMI3 77 aa7.92□□□□□ -1.14
UPF3B-201ENST00000276201 NBR2O15453 112 aa7.92□□□□□ -1.14
UPF3B-201ENST00000276201 GNG7O60262 68 aa7.92□□□□□ -1.14
UPF3B-201ENST00000276201 IGKV2D-40P01614 121 aaPredicted RBP7.92□□□□□ -1.14
UPF3B-201ENST00000276201 APELAP0DMC3 54 aa7.92□□□□□ -1.14
UPF3B-201ENST00000276201 ZC2HC1BQ5TFG8 222 aa7.92□□□□□ -1.14
UPF3B-201ENST00000276201 TEX29Q8N6K0 151 aa7.92□□□□□ -1.14
UPF3B-201ENST00000276201 TMEM158Q8WZ71 300 aa7.92□□□□□ -1.14
UPF3B-201ENST00000276201 MRPL53Q96EL3 112 aaKnown RBP7.92□□□□□ -1.14
UPF3B-201ENST00000276201 FANCD2OSQ96PS1 177 aa7.92□□□□□ -1.14
UPF3B-201ENST00000276201 NHP2Q9NX24 153 aaKnown RBP7.92□□□□□ -1.14
UPF3B-201ENST00000276201 TSSC4Q9Y5U2 329 aaPredicted RBP7.92□□□□□ -1.14
UPF3B-201ENST00000276201 CUBNO60494 3623 aa7.92□□□□□ -1.14
UPF3B-201ENST00000276201 CNIH1O95406 144 aa7.92□□□□□ -1.14
UPF3B-201ENST00000276201 MYOZ3Q8TDC0 251 aa7.92□□□□□ -1.14
UPF3B-201ENST00000276201 FXYD7P58549 80 aa7.91□□□□□ -1.14
UPF3B-201ENST00000276201 LAGE3Q14657 143 aa7.91□□□□□ -1.14
UPF3B-201ENST00000276201 MTURNQ8N3F0 131 aa7.91□□□□□ -1.14
UPF3B-201ENST00000276201 LY6G5BQ8NDX9 201 aa7.91□□□□□ -1.14
UPF3B-201ENST00000276201 CFHR4Q92496 578 aa7.91□□□□□ -1.14
UPF3B-201ENST00000276201 SPAG8Q99932 426 aaPredicted RBP7.91□□□□□ -1.14
UPF3B-201ENST00000276201 WFDC2Q14508 124 aa7.91□□□□□ -1.14
UPF3B-201ENST00000276201 GAGE13Q4V321 117 aa7.91□□□□□ -1.14
UPF3B-201ENST00000276201 GTSCR1Q86UQ5 136 aa7.91□□□□□ -1.14
UPF3B-201ENST00000276201 NRACQ8N912 160 aa7.91□□□□□ -1.14
UPF3B-201ENST00000276201 OR11H6Q8NGC7 330 aa7.91□□□□□ -1.14
UPF3B-201ENST00000276201 SMAD5-AS1Q9Y6J3 95 aa7.91□□□□□ -1.14
UPF3B-201ENST00000276201 K7ERJ3 54 aa7.9□□□□□ -1.14
UPF3B-201ENST00000276201 IGHV4-38-2P0DP08 117 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 123.2 ms