RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 VPS25Q9BRG1 176 aa14.26□□□□□ -0.13
CPSF3-201ENST00000238112 CHAC1Q9BUX1 264 aa14.26□□□□□ -0.13
CPSF3-201ENST00000238112 TRAV40A0A0B4J280 105 aa14.25□□□□□ -0.13
CPSF3-201ENST00000238112 IGF1P05019 195 aa14.25□□□□□ -0.13
CPSF3-201ENST00000238112 BRD3OSQ6XYD6 125 aa14.25□□□□□ -0.13
CPSF3-201ENST00000238112 MRPL35Q9NZE8 188 aaKnown RBP14.25□□□□□ -0.13
CPSF3-201ENST00000238112 K7ERU9 68 aa14.25□□□□□ -0.13
CPSF3-201ENST00000238112 NDUFA4O00483 81 aa14.25□□□□□ -0.13
CPSF3-201ENST00000238112 TRBV12-3P01733 135 aa14.25□□□□□ -0.13
CPSF3-201ENST00000238112 TRAV21A0A0B4J279 112 aa14.24□□□□□ -0.13
CPSF3-201ENST00000238112 OVOL1O14753 267 aa14.24□□□□□ -0.13
CPSF3-201ENST00000238112 SMIM13P0DJ93 91 aa14.24□□□□□ -0.13
CPSF3-201ENST00000238112 S100A4P26447 101 aaKnown RBP14.24□□□□□ -0.13
CPSF3-201ENST00000238112 A0A1W2PPM0 123 aa14.24□□□□□ -0.13
CPSF3-201ENST00000238112 M0R381 172 aa14.24□□□□□ -0.13
CPSF3-201ENST00000238112 IGHV4-39P01824 125 aa14.24□□□□□ -0.13
CPSF3-201ENST00000238112 SMIM2Q9BVW6 85 aa14.24□□□□□ -0.13
CPSF3-201ENST00000238112 TRBV25-1A0A075B6N4 114 aa14.23□□□□□ -0.13
CPSF3-201ENST00000238112 A0A087WX48 190 aa14.23□□□□□ -0.13
CPSF3-201ENST00000238112 ZFAND2AQ8N6M9 145 aa14.23□□□□□ -0.13
CPSF3-201ENST00000238112 HIVEP3Q5T1R4 2406 aa14.23□□□□□ -0.13
CPSF3-201ENST00000238112 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.23□□□□□ -0.13
CPSF3-201ENST00000238112 C19orf84I3L1E1 186 aa14.23□□□□□ -0.13
CPSF3-201ENST00000238112 HLA-DRB4P13762 266 aa14.23□□□□□ -0.13
CPSF3-201ENST00000238112 RPL11P62913 178 aaKnown RBP14.23□□□□□ -0.13
CPSF3-201ENST00000238112 GPHB5Q86YW7 130 aa14.23□□□□□ -0.13
CPSF3-201ENST00000238112 HLA-DRB4X5D2U9 266 aa14.23□□□□□ -0.13
CPSF3-201ENST00000238112 ASIPP42127 132 aa14.22□□□□□ -0.13
CPSF3-201ENST00000238112 FXYD2P54710 66 aa14.22□□□□□ -0.13
CPSF3-201ENST00000238112 PLNP26678 52 aa14.21□□□□□ -0.13
CPSF3-201ENST00000238112 SPCS1Q9Y6A9 102 aa14.21□□□□□ -0.13
CPSF3-201ENST00000238112 SOCS3O14543 225 aa14.21□□□□□ -0.13
CPSF3-201ENST00000238112 FABP2P12104 132 aa14.21□□□□□ -0.13
CPSF3-201ENST00000238112 LY6EQ16553 131 aa14.21□□□□□ -0.13
CPSF3-201ENST00000238112 USMG5Q96IX5 58 aa14.21□□□□□ -0.13
CPSF3-201ENST00000238112 PHLDA3Q9Y5J5 127 aa14.21□□□□□ -0.13
CPSF3-201ENST00000238112 SELENOKQ9Y6D0 94 aa14.21□□□□□ -0.13
CPSF3-201ENST00000238112 AKAP6Q13023 2319 aa14.21□□□□□ -0.14
CPSF3-201ENST00000238112 IGHV3-11P01762 117 aa14.2□□□□□ -0.14
CPSF3-201ENST00000238112 ORMDL2Q53FV1 153 aa14.2□□□□□ -0.14
CPSF3-201ENST00000238112 OR5A1Q8NGJ0 315 aa14.2□□□□□ -0.14
CPSF3-201ENST00000238112 MEGF9Q9H1U4 602 aa14.2□□□□□ -0.14
CPSF3-201ENST00000238112 DPH3P1Q9H4G8 78 aa14.2□□□□□ -0.14
CPSF3-201ENST00000238112 SUMO2P61956 95 aaKnown RBP14.2□□□□□ -0.14
CPSF3-201ENST00000238112 SAMD5Q5TGI4 173 aa14.2□□□□□ -0.14
CPSF3-201ENST00000238112 PIMREGQ9BSJ6 248 aa14.2□□□□□ -0.14
CPSF3-201ENST00000238112 H3BUA1 57 aa14.19□□□□□ -0.14
CPSF3-201ENST00000238112 DEFB1P60022 68 aa14.19□□□□□ -0.14
CPSF3-201ENST00000238112 SPRY2O43597 315 aa14.19□□□□□ -0.14
CPSF3-201ENST00000238112 RNASE4P34096 147 aaKnown RBP14.19□□□□□ -0.14
CPSF3-201ENST00000238112 ANXA2RQ3ZCQ2 193 aa14.19□□□□□ -0.14
CPSF3-201ENST00000238112 C14orf178Q8N769 122 aaPredicted RBP14.19□□□□□ -0.14
CPSF3-201ENST00000238112 C20orf78Q9BR46 151 aa14.19□□□□□ -0.14
CPSF3-201ENST00000238112 H7C1H1 209 aa14.18□□□□□ -0.14
CPSF3-201ENST00000238112 PF4V1P10720 104 aa14.18□□□□□ -0.14
CPSF3-201ENST00000238112 CEND1Q8N111 149 aa14.18□□□□□ -0.14
CPSF3-201ENST00000238112 RASL10AQ92737 203 aa14.18□□□□□ -0.14
CPSF3-201ENST00000238112 SCGB3A1Q96QR1 104 aa14.18□□□□□ -0.14
CPSF3-201ENST00000238112 KLK15Q9H2R5 256 aa14.18□□□□□ -0.14
CPSF3-201ENST00000238112 IGKV3-7A0A075B6H7 116 aa14.18□□□□□ -0.14
CPSF3-201ENST00000238112 TRAV12-1A0A0B4J245 112 aa14.18□□□□□ -0.14
CPSF3-201ENST00000238112 IGHV4-61A0A0C4DH41 118 aa14.18□□□□□ -0.14
CPSF3-201ENST00000238112 MGPP08493 103 aa14.18□□□□□ -0.14
CPSF3-201ENST00000238112 F8VRH5 84 aa14.17□□□□□ -0.14
CPSF3-201ENST00000238112 IGHG2P01859 326 aa14.17□□□□□ -0.14
CPSF3-201ENST00000238112 IGHV4-38-2P0DP08 117 aa14.17□□□□□ -0.14
CPSF3-201ENST00000238112 SLC25A16P16260 332 aa14.17□□□□□ -0.14
CPSF3-201ENST00000238112 H3BUX3 64 aa14.16□□□□□ -0.14
CPSF3-201ENST00000238112 MED14OSP0DP75 135 aa14.16□□□□□ -0.14
CPSF3-201ENST00000238112 TOMM6Q96B49 74 aa14.16□□□□□ -0.14
CPSF3-201ENST00000238112 RPL39LQ96EH5 51 aaKnown RBP14.16□□□□□ -0.14
CPSF3-201ENST00000238112 TM2D2Q9BX73 214 aa14.16□□□□□ -0.14
CPSF3-201ENST00000238112 NHP2Q9NX24 153 aaKnown RBP14.16□□□□□ -0.14
CPSF3-201ENST00000238112 F6UB75 175 aa14.16□□□□□ -0.14
CPSF3-201ENST00000238112 K7ERJ3 54 aa14.16□□□□□ -0.14
CPSF3-201ENST00000238112 SAP30O75446 220 aa14.16□□□□□ -0.14
CPSF3-201ENST00000238112 BRI3O95415 125 aa14.16□□□□□ -0.14
CPSF3-201ENST00000238112 GNLYP22749 145 aa14.16□□□□□ -0.14
CPSF3-201ENST00000238112 MAPKAPK5-AS1Q8N8E1 139 aa14.16□□□□□ -0.14
CPSF3-201ENST00000238112 K7EMI3 77 aa14.15□□□□□ -0.14
CPSF3-201ENST00000238112 FAM19A4Q96LR4 140 aa14.15□□□□□ -0.14
CPSF3-201ENST00000238112 CHTOPQ9Y3Y2 248 aaKnown RBP14.15□□□□□ -0.14
CPSF3-201ENST00000238112 RHPN1-AS1Q9BWJ2 59 aa14.15□□□□□ -0.14
CPSF3-201ENST00000238112 SPOCK3Q9BQ16 436 aa14.14□□□□□ -0.15
CPSF3-201ENST00000238112 A6NDX4 124 aa14.14□□□□□ -0.15
CPSF3-201ENST00000238112 GNRH2O43555 120 aa14.14□□□□□ -0.15
CPSF3-201ENST00000238112 TAL2Q16559 108 aa14.14□□□□□ -0.15
CPSF3-201ENST00000238112 TRBV7-9A0A0J9YWB2 115 aa14.13□□□□□ -0.15
CPSF3-201ENST00000238112 APRG1Q8IVJ8 170 aa14.13□□□□□ -0.15
CPSF3-201ENST00000238112 CCL19Q99731 98 aa14.13□□□□□ -0.15
CPSF3-201ENST00000238112 PPP1R17O96001 155 aa14.13□□□□□ -0.15
CPSF3-201ENST00000238112 BLCAPP62952 87 aa14.13□□□□□ -0.15
CPSF3-201ENST00000238112 COTL1Q14019 142 aa14.13□□□□□ -0.15
CPSF3-201ENST00000238112 LCNL1Q6ZST4 164 aa14.13□□□□□ -0.15
CPSF3-201ENST00000238112 PHLDA1Q8WV24 401 aaPredicted RBP14.13□□□□□ -0.15
CPSF3-201ENST00000238112 DAZ1Q9NQZ3 744 aaKnown RBP14.13□□□□□ -0.15
CPSF3-201ENST00000238112 ABCA2Q9BZC7 2435 aa14.12□□□□□ -0.15
CPSF3-201ENST00000238112 OR11H12B2RN74 326 aa14.12□□□□□ -0.15
CPSF3-201ENST00000238112 RNASE3P12724 160 aaKnown RBP14.12□□□□□ -0.15
CPSF3-201ENST00000238112 C2orf66Q6UXQ4 117 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms