RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 FGF7P21781 194 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 CKS2P33552 79 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 ZNF93P35789 620 aaPredicted RBP1.11□□□□□ -2.23
CD44-239ENST00000639002 RBP2P50120 134 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 AKR1D1P51857 326 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 FOXA3P55318 350 aaPredicted RBP1.11□□□□□ -2.23
CD44-239ENST00000639002 CDK6Q00534 326 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 PLGLB1Q02325 96 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 OCIAD2Q56VL3 154 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 Q5XG85 94 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 GLIPR1L1Q6UWM5 242 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 IZUMO2Q6UXV1 221 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 OR8B3Q8NGG8 313 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 TMEM254Q8TBM7 123 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 ZNF431Q8TF32 576 aaPredicted RBP1.11□□□□□ -2.23
CD44-239ENST00000639002 OR4C12Q96R67 309 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 RETNLBQ9BQ08 111 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 COMMD3Q9UBI1 195 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 PSORS1C2Q9UIG4 136 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 MYOM3Q5VTT5 1437 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 FGD6Q6ZV73 1430 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 EP300Q09472 2414 aaPredicted RBP1.11□□□□□ -2.23
CD44-239ENST00000639002 CPAMD8Q8IZJ3 1885 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 RELNP78509 3460 aa1.11□□□□□ -2.23
CD44-239ENST00000639002 SCN8AQ9UQD0 1980 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 NISCHQ9Y2I1 1504 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 MEGF8Q7Z7M0 2845 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 BSNQ9UPA5 3926 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 FAM135BQ49AJ0 1406 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 TRAV3A0A0B4J244 114 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 A0A0G2JMM0 328 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 A0A1W2PPB8 328 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 hDV103S1A0JD37 113 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 ZNF727A8MUV8 499 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 KIR3DP1A8MWS1 328 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 ZNF736B4DX44 427 aaPredicted RBP1.1□□□□□ -2.23
CD44-239ENST00000639002 FNDC10F2Z333 226 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 LY6LH3BQJ8 138 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 CORTO00230 105 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 OR1I1O60431 355 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 UBL3O95164 117 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 TRACP01848 142 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 PYYP10082 97 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 DEFA4P12838 97 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 PEBP1P30086 187 aaKnown RBP1.1□□□□□ -2.23
CD44-239ENST00000639002 GNG4P50150 75 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 RPL26P61254 145 aaKnown RBP1.1□□□□□ -2.23
CD44-239ENST00000639002 SNRPD3P62318 126 aaKnown RBP1.1□□□□□ -2.23
CD44-239ENST00000639002 BLCAPP62952 87 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 PPP3R1P63098 170 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 FOXF1Q12946 379 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 ZNF345Q14585 488 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 NNATQ16517 81 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 ZNF181Q2M3W8 571 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 LINC01545Q5VT33 79 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 C2orf82Q6UX34 121 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 TMEM91Q6ZNR0 172 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 Q6ZQT0 140 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 ZNF826PQ6ZT77 177 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 GTF2H5Q6ZYL4 71 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 TEN1Q86WV5 123 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 C8orf59Q8N0T1 100 aaPredicted RBP1.1□□□□□ -2.23
CD44-239ENST00000639002 C10orf111Q8N326 155 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 C3orf56Q8N813 242 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.1□□□□□ -2.23
CD44-239ENST00000639002 PSMF1Q92530 271 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 POP5Q969H6 163 aaKnown RBP1.1□□□□□ -2.23
CD44-239ENST00000639002 DIRC1Q969H9 104 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 MUCL1Q96DR8 90 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 ZC2HC1AQ96GY0 325 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 HYLS1Q96M11 299 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 CIB3Q96Q77 187 aaPredicted RBP1.1□□□□□ -2.23
CD44-239ENST00000639002 SLC50A1Q9BRV3 221 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 SLC35B3Q9H1N7 401 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 CXCL16Q9H2A7 254 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 CST9LQ9H4G1 147 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 TMEM106BQ9NUM4 274 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 RPL26L1Q9UNX3 145 aaKnown RBP1.1□□□□□ -2.23
CD44-239ENST00000639002 TEX15Q9BXT5 2789 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 SCAF11Q99590 1463 aaKnown RBP1.1□□□□□ -2.23
CD44-239ENST00000639002 TANC2Q9HCD6 1990 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 HEATR5AQ86XA9 2040 aa1.1□□□□□ -2.23
CD44-239ENST00000639002 SHANK3Q9BYB0 1731 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 LAMB4A4D0S4 1761 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 ZFC3H1O60293 1989 aaKnown RBP1.09□□□□□ -2.23
CD44-239ENST00000639002 SCN9AQ15858 1988 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 MUC5BQ9HC84 5762 aaPredicted RBP1.09□□□□□ -2.23
CD44-239ENST00000639002 TRBV20-1A0A075B6N2 111 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 PIGBOS1A0A0B4J2F0 54 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 TRGV4A0A0C4DH28 118 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 A0A1B0GVG6 124 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 C9orf170A2RU37 121 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 ZNF705FA8MVS1 300 aaPredicted RBP1.09□□□□□ -2.23
CD44-239ENST00000639002 HYPMO75409 117 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 PGLYRP1O75594 196 aaPredicted RBP1.09□□□□□ -2.23
CD44-239ENST00000639002 CRPP02741 224 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 ASAH2BP0C7U1 165 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 SLC25A4P12235 298 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 HIST1H1DP16402 221 aaKnown RBP1.09□□□□□ -2.23
CD44-239ENST00000639002 TPPP2P59282 170 aa1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms