RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 HTN3P15516 51 aa12.38□□□□□ -0.43
SHKBP1-203ENST00000594298 FAM3BP58499 235 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-203ENST00000594298 TMEM88Q6PEY1 159 aa12.38□□□□□ -0.43
SHKBP1-203ENST00000594298 C16orf74Q96GX8 76 aa12.38□□□□□ -0.43
SHKBP1-203ENST00000594298 ABCA13Q86UQ4 5058 aa12.37□□□□□ -0.43
SHKBP1-203ENST00000594298 SERTM2A0A1B0GWG4 89 aa12.37□□□□□ -0.43
SHKBP1-203ENST00000594298 LYRM9A8MSI8 78 aa12.37□□□□□ -0.43
SHKBP1-203ENST00000594298 KLLNB2CW77 178 aa12.37□□□□□ -0.43
SHKBP1-203ENST00000594298 SEC11BP0C7V7 166 aa12.37□□□□□ -0.43
SHKBP1-203ENST00000594298 RNASE4P34096 147 aaKnown RBP12.37□□□□□ -0.43
SHKBP1-203ENST00000594298 DAD1P61803 113 aa12.37□□□□□ -0.43
SHKBP1-203ENST00000594298 KIR3DS1Q14943 382 aa12.37□□□□□ -0.43
SHKBP1-203ENST00000594298 C1orf134Q5TEV5 83 aa12.37□□□□□ -0.43
SHKBP1-203ENST00000594298 TMUB2Q71RG4 321 aa12.37□□□□□ -0.43
SHKBP1-203ENST00000594298 IQCF2Q8IXL9 164 aa12.37□□□□□ -0.43
SHKBP1-203ENST00000594298 TMED6Q8WW62 240 aa12.37□□□□□ -0.43
SHKBP1-203ENST00000594298 PYGO2Q9BRQ0 406 aa12.37□□□□□ -0.43
SHKBP1-203ENST00000594298 LENEPQ9Y5L5 61 aa12.37□□□□□ -0.43
SHKBP1-203ENST00000594298 UMAD1C9J7I0 102 aa12.36□□□□□ -0.43
SHKBP1-203ENST00000594298 K7EQM0 130 aa12.36□□□□□ -0.43
SHKBP1-203ENST00000594298 C15orf53Q8NAA6 179 aa12.36□□□□□ -0.43
SHKBP1-203ENST00000594298 STOML3Q8TAV4 291 aa12.36□□□□□ -0.43
SHKBP1-203ENST00000594298 TMEM263Q8WUH6 116 aaKnown RBP12.36□□□□□ -0.43
SHKBP1-203ENST00000594298 RPH3ALQ9UNE2 315 aa12.36□□□□□ -0.43
SHKBP1-203ENST00000594298 TPT1P13693 172 aaKnown RBP12.35□□□□□ -0.43
SHKBP1-203ENST00000594298 AZU1P20160 251 aa12.35□□□□□ -0.43
SHKBP1-203ENST00000594298 AKAP14Q86UN6 197 aa12.35□□□□□ -0.43
SHKBP1-203ENST00000594298 ZNF575Q86XF7 245 aa12.35□□□□□ -0.43
SHKBP1-203ENST00000594298 C5orf17Q8NAS9 161 aa12.35□□□□□ -0.43
SHKBP1-203ENST00000594298 TIMM8BQ9Y5J9 83 aaPredicted RBP12.35□□□□□ -0.43
SHKBP1-203ENST00000594298 A0A1W2PRE2 83 aa12.34□□□□□ -0.43
SHKBP1-203ENST00000594298 PRM2P04554 102 aa12.34□□□□□ -0.43
SHKBP1-203ENST00000594298 SUMO1P63165 101 aaKnown RBP12.34□□□□□ -0.43
SHKBP1-203ENST00000594298 ZNF726P1Q15940 193 aa12.34□□□□□ -0.43
SHKBP1-203ENST00000594298 GOLT1AQ6ZVE7 132 aa12.34□□□□□ -0.43
SHKBP1-203ENST00000594298 SSX7Q7RTT5 188 aa12.34□□□□□ -0.43
SHKBP1-203ENST00000594298 ZFAND2AQ8N6M9 145 aa12.34□□□□□ -0.43
SHKBP1-203ENST00000594298 LINC00467Q9BRT7 94 aa12.34□□□□□ -0.43
SHKBP1-203ENST00000594298 NKX6-2Q9C056 277 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-203ENST00000594298 MAP1LC3B2A6NCE7 125 aa12.33□□□□□ -0.44
SHKBP1-203ENST00000594298 ZNF324O75467 553 aaPredicted RBP12.33□□□□□ -0.44
SHKBP1-203ENST00000594298 C1QBP02746 253 aa12.33□□□□□ -0.44
SHKBP1-203ENST00000594298 CD300CQ08708 224 aa12.33□□□□□ -0.44
SHKBP1-203ENST00000594298 BTN1A1Q13410 526 aa12.33□□□□□ -0.44
SHKBP1-203ENST00000594298 EIF5AL1Q6IS14 154 aaKnown RBP12.33□□□□□ -0.44
SHKBP1-203ENST00000594298 DPPA3Q6W0C5 159 aa12.33□□□□□ -0.44
SHKBP1-203ENST00000594298 MAP1LC3BQ9GZQ8 125 aa12.33□□□□□ -0.44
SHKBP1-203ENST00000594298 hCG_2014768A0A024R1R8 64 aa12.32□□□□□ -0.44
SHKBP1-203ENST00000594298 SNURFLB1AK76 121 aa12.32□□□□□ -0.44
SHKBP1-203ENST00000594298 RGS13O14921 159 aa12.32□□□□□ -0.44
SHKBP1-203ENST00000594298 EIF4E3Q8N5X7 224 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-203ENST00000594298 ZNF680Q8NEM1 530 aa12.32□□□□□ -0.44
SHKBP1-203ENST00000594298 Q8TAT8 98 aa12.32□□□□□ -0.44
SHKBP1-203ENST00000594298 RNASE8Q8TDE3 154 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-203ENST00000594298 PLAC8L1A1L4L8 177 aa12.31□□□□□ -0.44
SHKBP1-203ENST00000594298 FBLL1A6NHQ2 334 aaKnown RBP12.31□□□□□ -0.44
SHKBP1-203ENST00000594298 CBY3A6NI87 242 aa12.31□□□□□ -0.44
SHKBP1-203ENST00000594298 TCRAP04437 139 aa12.31□□□□□ -0.44
SHKBP1-203ENST00000594298 FGF8P55075 233 aaPredicted RBP12.31□□□□□ -0.44
SHKBP1-203ENST00000594298 NDFIP1Q9BT67 221 aa12.31□□□□□ -0.44
SHKBP1-203ENST00000594298 EPDR1Q9UM22 224 aa12.31□□□□□ -0.44
SHKBP1-203ENST00000594298 DEFB130BP0DP73 79 aa12.3□□□□□ -0.44
SHKBP1-203ENST00000594298 DEFB130AP0DP74 79 aa12.3□□□□□ -0.44
SHKBP1-203ENST00000594298 GNG5P63218 68 aa12.3□□□□□ -0.44
SHKBP1-203ENST00000594298 ANXA2RQ3ZCQ2 193 aa12.3□□□□□ -0.44
SHKBP1-203ENST00000594298 LGALSLQ3ZCW2 172 aaPredicted RBP12.3□□□□□ -0.44
SHKBP1-203ENST00000594298 FAM213BQ8TBF2 198 aa12.3□□□□□ -0.44
SHKBP1-203ENST00000594298 ATG101Q9BSB4 218 aa12.3□□□□□ -0.44
SHKBP1-203ENST00000594298 KRTAP4-5Q9BYR2 181 aa12.3□□□□□ -0.44
SHKBP1-203ENST00000594298 TMPRSS5Q9H3S3 457 aa12.3□□□□□ -0.44
SHKBP1-203ENST00000594298 NOP10Q9NPE3 64 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-203ENST00000594298 IGHV1OR15-1A0A075B7D0 117 aa12.29□□□□□ -0.44
SHKBP1-203ENST00000594298 GGTLC3B5MD39 225 aa12.29□□□□□ -0.44
SHKBP1-203ENST00000594298 IFNA7P01567 189 aa12.29□□□□□ -0.44
SHKBP1-203ENST00000594298 CYB561D1Q8N8Q1 229 aa12.29□□□□□ -0.44
SHKBP1-203ENST00000594298 ZNRF2Q8NHG8 242 aa12.29□□□□□ -0.44
SHKBP1-203ENST00000594298 SFT2D1Q8WV19 159 aa12.29□□□□□ -0.44
SHKBP1-203ENST00000594298 MBD3L1Q8WWY6 194 aa12.29□□□□□ -0.44
SHKBP1-203ENST00000594298 TREM1Q9NP99 234 aa12.29□□□□□ -0.44
SHKBP1-203ENST00000594298 HSPG2P98160 4391 aa12.29□□□□□ -0.44
SHKBP1-203ENST00000594298 PPT1P50897 306 aa12.28□□□□□ -0.44
SHKBP1-203ENST00000594298 RAB5CP51148 216 aa12.28□□□□□ -0.44
SHKBP1-203ENST00000594298 UBE2G2P60604 165 aa12.28□□□□□ -0.44
SHKBP1-203ENST00000594298 TNP2Q05952 138 aa12.28□□□□□ -0.44
SHKBP1-203ENST00000594298 DAZ2Q13117 558 aaKnown RBP12.28□□□□□ -0.44
SHKBP1-203ENST00000594298 PRR9Q5T870 116 aa12.28□□□□□ -0.44
SHKBP1-203ENST00000594298 Q6AWC8 147 aa12.28□□□□□ -0.44
SHKBP1-203ENST00000594298 NACAE9PAV3 2078 aa12.28□□□□□ -0.44
SHKBP1-203ENST00000594298 MUC4Q99102 2169 aa12.28□□□□□ -0.44
SHKBP1-203ENST00000594298 TRAV8-1A0A0A6YYK1 113 aa12.27□□□□□ -0.45
SHKBP1-203ENST00000594298 NBDYA0A0U1RRE5 68 aa12.27□□□□□ -0.45
SHKBP1-203ENST00000594298 FAM74A7A6NL05 159 aa12.27□□□□□ -0.45
SHKBP1-203ENST00000594298 F6UZH7 168 aa12.27□□□□□ -0.45
SHKBP1-203ENST00000594298 CDK2AP2O75956 126 aa12.27□□□□□ -0.45
SHKBP1-203ENST00000594298 ATP5G1P05496 136 aa12.27□□□□□ -0.45
SHKBP1-203ENST00000594298 ATP5G3P48201 142 aa12.27□□□□□ -0.45
SHKBP1-203ENST00000594298 FHITP49789 147 aa12.27□□□□□ -0.45
SHKBP1-203ENST00000594298 FAM159AQ6UWV7 190 aa12.27□□□□□ -0.45
SHKBP1-203ENST00000594298 SLC51BQ86UW2 128 aa12.27□□□□□ -0.45
SHKBP1-203ENST00000594298 TMEM75Q8N9X5 138 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms