RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PGPEP1Q9NXJ5 209 aa14.41□□□□□ -0.1
VPS53-216ENST00000574029 ICOSQ9Y6W8 199 aa14.41□□□□□ -0.1
VPS53-216ENST00000574029 PAX4O43316 350 aa14.4□□□□□ -0.1
VPS53-216ENST00000574029 NXPH4O95158 308 aa14.4□□□□□ -0.1
VPS53-216ENST00000574029 GPX1P07203 203 aa14.4□□□□□ -0.1
VPS53-216ENST00000574029 ZFAND2AQ8N6M9 145 aa14.4□□□□□ -0.1
VPS53-216ENST00000574029 OR2T35Q8NGX2 323 aa14.4□□□□□ -0.1
VPS53-216ENST00000574029 GCSAMLQ5JQS6 135 aa14.39□□□□□ -0.11
VPS53-216ENST00000574029 BLNKQ8WV28 456 aa14.39□□□□□ -0.11
VPS53-216ENST00000574029 TP53TG3Q9ULZ0 132 aa14.39□□□□□ -0.11
VPS53-216ENST00000574029 G3V3Q6 166 aa14.38□□□□□ -0.11
VPS53-216ENST00000574029 PRR9Q5T870 116 aa14.38□□□□□ -0.11
VPS53-216ENST00000574029 INO80EQ8NBZ0 244 aaPredicted RBP14.38□□□□□ -0.11
VPS53-216ENST00000574029 SLC25A2Q9BXI2 301 aa14.38□□□□□ -0.11
VPS53-216ENST00000574029 AAMDCQ9H7C9 122 aa14.38□□□□□ -0.11
VPS53-216ENST00000574029 PRO0255Q9UI72 69 aa14.38□□□□□ -0.11
VPS53-216ENST00000574029 TNFSF18Q9UNG2 199 aa14.38□□□□□ -0.11
VPS53-216ENST00000574029 IGKV2-40A0A087WW87 121 aaPredicted RBP14.37□□□□□ -0.11
VPS53-216ENST00000574029 EPM2AB3EWF7 344 aa14.37□□□□□ -0.11
VPS53-216ENST00000574029 RGS13O14921 159 aa14.37□□□□□ -0.11
VPS53-216ENST00000574029 IGKV2D-40P01614 121 aaPredicted RBP14.37□□□□□ -0.11
VPS53-216ENST00000574029 IGHV3-53P01767 116 aa14.37□□□□□ -0.11
VPS53-216ENST00000574029 CRYBA4P53673 196 aa14.37□□□□□ -0.11
VPS53-216ENST00000574029 ERVFC1-1P60608 527 aa14.37□□□□□ -0.11
VPS53-216ENST00000574029 SLAQ13239 276 aa14.37□□□□□ -0.11
VPS53-216ENST00000574029 ICAM4Q14773 271 aa14.37□□□□□ -0.11
VPS53-216ENST00000574029 TMEM78Q5T7P6 136 aa14.37□□□□□ -0.11
VPS53-216ENST00000574029 LYPD5Q6UWN5 251 aa14.37□□□□□ -0.11
VPS53-216ENST00000574029 Q6ZQT7 251 aa14.37□□□□□ -0.11
VPS53-216ENST00000574029 VGLL1Q99990 258 aa14.37□□□□□ -0.11
VPS53-216ENST00000574029 MRPL16Q9NX20 251 aaKnown RBP14.37□□□□□ -0.11
VPS53-216ENST00000574029 ZNF492Q9P255 531 aa14.37□□□□□ -0.11
VPS53-216ENST00000574029 IGHV1OR15-1A0A075B7D0 117 aa14.36□□□□□ -0.11
VPS53-216ENST00000574029 EREGO14944 169 aa14.36□□□□□ -0.11
VPS53-216ENST00000574029 FHL2Q14192 279 aa14.36□□□□□ -0.11
VPS53-216ENST00000574029 ZNF266Q14584 549 aa14.36□□□□□ -0.11
VPS53-216ENST00000574029 CDPF1Q6NVV7 123 aa14.36□□□□□ -0.11
VPS53-216ENST00000574029 FAM167A-AS1Q96KT0 104 aa14.36□□□□□ -0.11
VPS53-216ENST00000574029 MRPL32Q9BYC8 188 aaKnown RBP14.36□□□□□ -0.11
VPS53-216ENST00000574029 HHLA3Q9XRX5 114 aa14.36□□□□□ -0.11
VPS53-216ENST00000574029 TNFRSF18Q9Y5U5 241 aa14.36□□□□□ -0.11
VPS53-216ENST00000574029 FXYD6-FXYD2A0A087WZ82 144 aa14.35□□□□□ -0.11
VPS53-216ENST00000574029 RNF222A6NCQ9 220 aa14.35□□□□□ -0.11
VPS53-216ENST00000574029 FUSP35637 526 aaKnown RBP eCLIP14.35□□□□□ -0.11
VPS53-216ENST00000574029 FFAR4Q5NUL3 377 aa14.35□□□□□ -0.11
VPS53-216ENST00000574029 FAM122CQ6P4D5 195 aa14.35□□□□□ -0.11
VPS53-216ENST00000574029 LYPD1Q8N2G4 141 aa14.35□□□□□ -0.11
VPS53-216ENST00000574029 XGP55808 180 aa14.34□□□□□ -0.11
VPS53-216ENST00000574029 MRPL23Q16540 153 aaKnown RBP14.34□□□□□ -0.11
VPS53-216ENST00000574029 MIR17HGQ75NE6 70 aa14.34□□□□□ -0.11
VPS53-216ENST00000574029 NFE4Q86UQ8 179 aa14.34□□□□□ -0.11
VPS53-216ENST00000574029 C8orf49Q96NF6 230 aa14.34□□□□□ -0.11
VPS53-216ENST00000574029 ARPC5LQ9BPX5 153 aa14.34□□□□□ -0.11
VPS53-216ENST00000574029 TRBV7-9A0A0J9YWB2 115 aa14.33□□□□□ -0.12
VPS53-216ENST00000574029 NBEAP1P0C6P0 100 aa14.33□□□□□ -0.12
VPS53-216ENST00000574029 ZNF138P52744 262 aa14.33□□□□□ -0.12
VPS53-216ENST00000574029 ZNF415Q09FC8 603 aa14.32□□□□□ -0.12
VPS53-216ENST00000574029 NEGR1Q7Z3B1 354 aa14.32□□□□□ -0.12
VPS53-216ENST00000574029 OR51M1Q9H341 326 aa14.32□□□□□ -0.12
VPS53-216ENST00000574029 TRAV9-2A0A087WT02 112 aa14.31□□□□□ -0.12
VPS53-216ENST00000574029 A0A087WTM6 91 aa14.31□□□□□ -0.12
VPS53-216ENST00000574029 ACOT6Q3I5F7 207 aaPredicted RBP14.31□□□□□ -0.12
VPS53-216ENST00000574029 IQCF2Q8IXL9 164 aa14.31□□□□□ -0.12
VPS53-216ENST00000574029 OR2G3Q8NGZ4 309 aa14.31□□□□□ -0.12
VPS53-216ENST00000574029 FXYD5Q96DB9 178 aa14.31□□□□□ -0.12
VPS53-216ENST00000574029 PSMG3Q9BT73 122 aaPredicted RBP14.31□□□□□ -0.12
VPS53-216ENST00000574029 DNAH10OSP0CZ25 163 aa14.3□□□□□ -0.12
VPS53-216ENST00000574029 Q6ZNX1 250 aa14.3□□□□□ -0.12
VPS53-216ENST00000574029 Q8TAT8 98 aa14.3□□□□□ -0.12
VPS53-216ENST00000574029 LY96Q9Y6Y9 160 aa14.3□□□□□ -0.12
VPS53-216ENST00000574029 K7EP13 123 aa14.29□□□□□ -0.12
VPS53-216ENST00000574029 K7EQD1 137 aa14.29□□□□□ -0.12
VPS53-216ENST00000574029 TAAR5O14804 337 aa14.29□□□□□ -0.12
VPS53-216ENST00000574029 SERF2P84101 59 aa14.29□□□□□ -0.12
VPS53-216ENST00000574029 HSD17B11Q8NBQ5 300 aa14.29□□□□□ -0.12
VPS53-216ENST00000574029 PHYHIPLQ96FC7 376 aa14.29□□□□□ -0.12
VPS53-216ENST00000574029 PAXXQ9BUH6 204 aa14.29□□□□□ -0.12
VPS53-216ENST00000574029 MDFICQ9P1T7 246 aa14.29□□□□□ -0.12
VPS53-216ENST00000574029 BORCS7-ASMTA0A0B4J1R7 106 aa14.28□□□□□ -0.12
VPS53-216ENST00000574029 TRGV4A0A0C4DH28 118 aa14.28□□□□□ -0.12
VPS53-216ENST00000574029 RBAKDNA6NC62 111 aa14.28□□□□□ -0.12
VPS53-216ENST00000574029 SMLR1H3BR10 107 aa14.28□□□□□ -0.12
VPS53-216ENST00000574029 OR10J4P0C629 311 aa14.28□□□□□ -0.12
VPS53-216ENST00000574029 INAFM2P0DMQ5 153 aa14.28□□□□□ -0.12
VPS53-216ENST00000574029 ATP6V0CP27449 155 aa14.28□□□□□ -0.12
VPS53-216ENST00000574029 KRTAP10-1P60331 282 aa14.28□□□□□ -0.12
VPS53-216ENST00000574029 RPL7L1Q6DKI1 246 aaKnown RBP14.28□□□□□ -0.12
VPS53-216ENST00000574029 HERC1Q15751 4861 aa14.27□□□□□ -0.12
VPS53-216ENST00000574029 HMSDA8MTL9 139 aa14.27□□□□□ -0.13
VPS53-216ENST00000574029 ARPC5O15511 151 aa14.27□□□□□ -0.13
VPS53-216ENST00000574029 SRIP30626 198 aa14.27□□□□□ -0.13
VPS53-216ENST00000574029 TAS2R45P59539 299 aa14.27□□□□□ -0.13
VPS53-216ENST00000574029 MUC21Q5SSG8 566 aa14.27□□□□□ -0.13
VPS53-216ENST00000574029 WFDC10BQ8IUB3 73 aa14.27□□□□□ -0.13
VPS53-216ENST00000574029 OR10G4Q8NGN3 311 aa14.27□□□□□ -0.13
VPS53-216ENST00000574029 RASL10AQ92737 203 aa14.27□□□□□ -0.13
VPS53-216ENST00000574029 ZNF479Q96JC4 524 aa14.27□□□□□ -0.13
VPS53-216ENST00000574029 MSRB1Q9NZV6 116 aa14.27□□□□□ -0.13
VPS53-216ENST00000574029 MBP02144 154 aa14.26□□□□□ -0.13
VPS53-216ENST00000574029 SFTA3P0C7M3 94 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms