RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 Q6ZR54 194 aa14.18□□□□□ -0.14
CLK3-225ENST00000569063 CMTM2Q8TAZ6 248 aa14.18□□□□□ -0.14
CLK3-225ENST00000569063 RAB24Q969Q5 203 aa14.18□□□□□ -0.14
CLK3-225ENST00000569063 ATG101Q9BSB4 218 aa14.18□□□□□ -0.14
CLK3-225ENST00000569063 TP53TG3Q9ULZ0 132 aa14.18□□□□□ -0.14
CLK3-225ENST00000569063 TNFSF18Q9UNG2 199 aa14.18□□□□□ -0.14
CLK3-225ENST00000569063 IGLV2-18A0A075B6J9 118 aa14.17□□□□□ -0.14
CLK3-225ENST00000569063 TRAV26-1A0A087WT03 109 aa14.17□□□□□ -0.14
CLK3-225ENST00000569063 ARL14EPLP0DKL9 152 aa14.17□□□□□ -0.14
CLK3-225ENST00000569063 OR2T35Q8NGX2 323 aa14.17□□□□□ -0.14
CLK3-225ENST00000569063 TMPRSS5Q9H3S3 457 aa14.17□□□□□ -0.14
CLK3-225ENST00000569063 KLF12Q9Y4X4 402 aa14.17□□□□□ -0.14
CLK3-225ENST00000569063 FXYD6-FXYD2A0A087WZ82 144 aa14.16□□□□□ -0.14
CLK3-225ENST00000569063 H3BNG1 76 aa14.16□□□□□ -0.14
CLK3-225ENST00000569063 SPINK4O60575 86 aa14.16□□□□□ -0.14
CLK3-225ENST00000569063 Q6AWC8 147 aa14.16□□□□□ -0.14
CLK3-225ENST00000569063 SUN5Q8TC36 379 aa14.16□□□□□ -0.14
CLK3-225ENST00000569063 GNPNAT1Q96EK6 184 aaPredicted RBP14.16□□□□□ -0.14
CLK3-225ENST00000569063 SH3BGRL3Q9H299 93 aa14.16□□□□□ -0.14
CLK3-225ENST00000569063 TRGV2A0A075B6R0 118 aa14.15□□□□□ -0.14
CLK3-225ENST00000569063 TRGV1A0A0A0MS02 117 aa14.15□□□□□ -0.14
CLK3-225ENST00000569063 CCL18P55774 89 aa14.15□□□□□ -0.14
CLK3-225ENST00000569063 RPL7L1Q6DKI1 246 aaKnown RBP14.15□□□□□ -0.14
CLK3-225ENST00000569063 ARPC5LQ9BPX5 153 aa14.15□□□□□ -0.14
CLK3-225ENST00000569063 NACAE9PAV3 2078 aa14.14□□□□□ -0.15
CLK3-225ENST00000569063 BORCS7-ASMTA0A0B4J1R7 106 aa14.14□□□□□ -0.15
CLK3-225ENST00000569063 G3V3Q6 166 aa14.14□□□□□ -0.15
CLK3-225ENST00000569063 RTL8CO15255 209 aa14.14□□□□□ -0.15
CLK3-225ENST00000569063 GCHFRP30047 84 aa14.14□□□□□ -0.15
CLK3-225ENST00000569063 GOLT1AQ6ZVE7 132 aa14.14□□□□□ -0.15
CLK3-225ENST00000569063 ST6GAL2Q96JF0 529 aa14.14□□□□□ -0.15
CLK3-225ENST00000569063 RPH3ALQ9UNE2 315 aa14.14□□□□□ -0.15
CLK3-225ENST00000569063 A0A0J9YY99 117 aa14.13□□□□□ -0.15
CLK3-225ENST00000569063 ZNRF2Q8NHG8 242 aa14.13□□□□□ -0.15
CLK3-225ENST00000569063 ACTR3CQ9C0K3 210 aaPredicted RBP14.13□□□□□ -0.15
CLK3-225ENST00000569063 LINC00588Q9Y4M8 146 aa14.13□□□□□ -0.15
CLK3-225ENST00000569063 CXorf1O96002 111 aa14.12□□□□□ -0.15
CLK3-225ENST00000569063 ZNF415Q09FC8 603 aa14.12□□□□□ -0.15
CLK3-225ENST00000569063 MUC21Q5SSG8 566 aa14.12□□□□□ -0.15
CLK3-225ENST00000569063 SERTM2A0A1B0GWG4 89 aa14.11□□□□□ -0.15
CLK3-225ENST00000569063 GNG5P63218 68 aa14.11□□□□□ -0.15
CLK3-225ENST00000569063 TDRG1Q3Y452 100 aa14.11□□□□□ -0.15
CLK3-225ENST00000569063 FAM159AQ6UWV7 190 aa14.11□□□□□ -0.15
CLK3-225ENST00000569063 TVP23CQ96ET8 276 aa14.11□□□□□ -0.15
CLK3-225ENST00000569063 TMEM167BQ9NRX6 74 aa14.11□□□□□ -0.15
CLK3-225ENST00000569063 TRAV8-1A0A0A6YYK1 113 aa14.1□□□□□ -0.15
CLK3-225ENST00000569063 SSX7Q7RTT5 188 aa14.1□□□□□ -0.15
CLK3-225ENST00000569063 C5orf17Q8NAS9 161 aa14.1□□□□□ -0.15
CLK3-225ENST00000569063 VSIG2Q96IQ7 327 aa14.1□□□□□ -0.15
CLK3-225ENST00000569063 MRPL16Q9NX20 251 aaKnown RBP14.1□□□□□ -0.15
CLK3-225ENST00000569063 MDFICQ9P1T7 246 aa14.1□□□□□ -0.15
CLK3-225ENST00000569063 DNAH2Q9P225 4427 aa14.1□□□□□ -0.15
CLK3-225ENST00000569063 PRSS29PA6NIE9 313 aa14.09□□□□□ -0.15
CLK3-225ENST00000569063 TAAR5O14804 337 aa14.09□□□□□ -0.15
CLK3-225ENST00000569063 TCRAP04437 139 aa14.09□□□□□ -0.15
CLK3-225ENST00000569063 TREM1Q9NP99 234 aa14.09□□□□□ -0.15
CLK3-225ENST00000569063 HECTD4Q9Y4D8 3996 aa14.08□□□□□ -0.16
CLK3-225ENST00000569063 TRGV11A0A075B6L2 103 aa14.08□□□□□ -0.16
CLK3-225ENST00000569063 TRAV21A0A0B4J279 112 aa14.08□□□□□ -0.16
CLK3-225ENST00000569063 A0A1B0GVY2 172 aa14.08□□□□□ -0.16
CLK3-225ENST00000569063 TMEM183BQ1AE95 376 aa14.08□□□□□ -0.16
CLK3-225ENST00000569063 SOHLH1Q5JUK2 328 aa14.08□□□□□ -0.16
CLK3-225ENST00000569063 C1orf134Q5TEV5 83 aa14.08□□□□□ -0.16
CLK3-225ENST00000569063 TMEM183AQ8IXX5 376 aa14.08□□□□□ -0.16
CLK3-225ENST00000569063 SPXQ9BT56 116 aa14.08□□□□□ -0.16
CLK3-225ENST00000569063 NBDYA0A0U1RRE5 68 aa14.07□□□□□ -0.16
CLK3-225ENST00000569063 K7EQM0 130 aa14.07□□□□□ -0.16
CLK3-225ENST00000569063 ARPC5O15511 151 aa14.07□□□□□ -0.16
CLK3-225ENST00000569063 SUMO1P63165 101 aaKnown RBP14.07□□□□□ -0.16
CLK3-225ENST00000569063 ZNF726P1Q15940 193 aa14.07□□□□□ -0.16
CLK3-225ENST00000569063 ESRGQ1W209 222 aa14.07□□□□□ -0.16
CLK3-225ENST00000569063 CYTL1Q9NRR1 136 aa14.07□□□□□ -0.16
CLK3-225ENST00000569063 CTXND1A0A1B0GTU2 59 aa14.06□□□□□ -0.16
CLK3-225ENST00000569063 A0A1W2PRE2 83 aa14.06□□□□□ -0.16
CLK3-225ENST00000569063 GGTLC3B5MD39 225 aa14.06□□□□□ -0.16
CLK3-225ENST00000569063 F6UZH7 168 aa14.06□□□□□ -0.16
CLK3-225ENST00000569063 RASL10AQ92737 203 aa14.06□□□□□ -0.16
CLK3-225ENST00000569063 SGK494Q96LW2 274 aa14.06□□□□□ -0.16
CLK3-225ENST00000569063 NDFIP1Q9BT67 221 aa14.06□□□□□ -0.16
CLK3-225ENST00000569063 NAGKQ9UJ70 344 aa14.06□□□□□ -0.16
CLK3-225ENST00000569063 EPDR1Q9UM22 224 aa14.06□□□□□ -0.16
CLK3-225ENST00000569063 FAT2Q9NYQ8 4349 aa14.06□□□□□ -0.16
CLK3-225ENST00000569063 A0A096LPF7 62 aa14.05□□□□□ -0.16
CLK3-225ENST00000569063 SLAQ13239 276 aa14.05□□□□□ -0.16
CLK3-225ENST00000569063 UPK3BQ9BT76 320 aa14.05□□□□□ -0.16
CLK3-225ENST00000569063 Q9H8V8 135 aa14.05□□□□□ -0.16
CLK3-225ENST00000569063 GNRH2O43555 120 aa14.04□□□□□ -0.16
CLK3-225ENST00000569063 IGLV2-11P01706 119 aa14.04□□□□□ -0.16
CLK3-225ENST00000569063 IGHV3-53P01767 116 aa14.04□□□□□ -0.16
CLK3-225ENST00000569063 AKR1C8PQ5T2L2 129 aa14.04□□□□□ -0.16
CLK3-225ENST00000569063 PRO0255Q9UI72 69 aa14.04□□□□□ -0.16
CLK3-225ENST00000569063 PSG8Q9UQ74 426 aa14.04□□□□□ -0.16
CLK3-225ENST00000569063 IGHV3-16A0A0C4DH30 117 aa14.03□□□□□ -0.16
CLK3-225ENST00000569063 FBLL1A6NHQ2 334 aaKnown RBP14.03□□□□□ -0.16
CLK3-225ENST00000569063 SMLR1H3BR10 107 aa14.03□□□□□ -0.16
CLK3-225ENST00000569063 PAX4O43316 350 aa14.03□□□□□ -0.16
CLK3-225ENST00000569063 FHL2Q14192 279 aa14.03□□□□□ -0.16
CLK3-225ENST00000569063 IQCF2Q8IXL9 164 aa14.03□□□□□ -0.16
CLK3-225ENST00000569063 CYB561D1Q8N8Q1 229 aa14.03□□□□□ -0.16
CLK3-225ENST00000569063 TMEM75Q8N9X5 138 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms